Wall clock time and date at job start Thu Apr 9 2020 14:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34160 * 125.37399 * 2 1 4 4 C 1.38406 * 108.68152 * 179.83292 * 3 2 1 5 5 C 1.47348 * 126.40473 * 180.14538 * 4 3 2 6 6 O 1.21627 * 119.99802 * 0.30192 * 5 4 3 7 7 N 1.34778 * 120.00221 * 180.30294 * 5 4 3 8 8 C 1.36968 * 120.00253 * 180.02562 * 7 5 4 9 9 H 1.08002 * 119.99943 * 359.97438 * 8 7 5 10 10 C 1.38978 * 120.00082 * 179.97438 * 8 7 5 11 11 N 1.31411 * 119.99805 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 119.99988 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47109 * 0.02562 * 12 10 8 14 14 H 1.48502 * 109.47130 * 119.99545 * 12 10 8 15 15 H 1.48498 * 109.47449 * 239.99977 * 12 10 8 16 16 C 1.41113 * 107.19461 * 0.42135 * 4 3 2 17 17 C 1.37842 * 106.82648 * 359.74477 * 16 4 3 18 18 C 1.41549 * 125.98092 * 180.02562 * 17 16 4 19 19 O 1.21417 * 119.99716 * 359.97438 * 18 17 16 20 20 H 1.09002 * 109.47391 * 269.69701 * 1 2 3 21 21 H 1.09001 * 109.46813 * 149.69758 * 1 2 3 22 22 H 1.09004 * 109.47041 * 29.69885 * 1 2 3 23 23 H 1.08000 * 125.65876 * 359.97438 * 3 2 1 24 24 H 0.97008 * 119.99518 * 359.97438 * 7 5 4 25 25 H 0.96998 * 119.99406 * 179.97438 * 11 10 8 26 26 H 1.07993 * 126.58932 * 179.71453 * 16 4 3 27 27 H 1.07995 * 120.00422 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2417 1.0939 0.0000 4 6 3.5674 0.6964 0.0038 5 6 4.7456 1.5811 0.0081 6 8 4.5994 2.7886 0.0141 7 7 5.9854 1.0525 0.0054 8 6 7.0807 1.8749 0.0100 9 1 6.9509 2.9471 0.0153 10 6 8.3591 1.3298 0.0077 11 7 8.5170 0.0252 0.0017 12 14 9.8528 2.4514 0.0132 13 1 9.4079 3.8682 0.0203 14 1 10.6687 2.1834 1.2247 15 1 10.6693 2.1945 -1.2003 16 6 3.5798 -0.7147 -0.0037 17 6 2.2639 -1.1253 -0.0059 18 6 1.8113 -2.4664 -0.0125 19 8 2.6134 -3.3778 -0.0173 20 1 -0.3634 -0.0054 1.0276 21 1 -0.3633 -0.8873 -0.5185 22 1 -0.3633 0.8927 -0.5092 23 1 1.8906 2.1153 -0.0004 24 1 6.1020 0.0894 0.0010 25 1 9.4093 -0.3553 -0.0002 26 1 4.4525 -1.3507 -0.0075 27 1 0.7524 -2.6790 -0.0142 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464723497.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:22 Heat of formation + Delta-G solvation = -48.477944 kcal Electronic energy + Delta-G solvation = -14300.253754 eV Core-core repulsion = 11637.257816 eV Total energy + Delta-G solvation = -2662.995938 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.079 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.48656 -39.89084 -39.39189 -35.99487 -34.10239 -33.09619 -30.97388 -28.23214 -26.61726 -25.24869 -23.17790 -20.74322 -20.46062 -19.76688 -18.62427 -17.06238 -16.71237 -16.58558 -16.23853 -15.90298 -15.48627 -15.24749 -14.85363 -14.42483 -14.39002 -13.55911 -13.35766 -13.12879 -13.07654 -12.87997 -12.40303 -12.09651 -11.55761 -10.98834 -10.47971 -10.08071 -9.79823 -9.33390 -8.49498 -5.96902 0.04308 0.90009 1.40798 1.44273 1.56942 1.77394 2.10034 2.30271 2.59640 3.27685 3.33279 3.51321 3.93097 3.96541 4.22689 4.43803 4.47975 4.54643 4.80336 4.95609 4.98987 5.38242 5.47733 5.73477 6.01815 6.17544 6.55817 6.56826 7.07818 7.52876 8.07738 8.68930 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.041577 B = 0.006825 C = 0.005882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.287977 B = 4101.357591 C = 4759.500232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.395 5.395 3 C 0.108 3.892 4 C -0.247 4.247 5 C 0.503 3.497 6 O -0.642 6.642 7 N -0.565 5.565 8 C -0.335 4.335 9 H 0.085 0.915 10 C -0.017 4.017 11 N -0.921 5.921 12 Si 1.002 2.998 13 H -0.268 1.268 14 H -0.269 1.269 15 H -0.269 1.269 16 C -0.096 4.096 17 C -0.124 4.124 18 C 0.416 3.584 19 O -0.511 6.511 20 H 0.103 0.897 21 H 0.118 0.882 22 H 0.112 0.888 23 H 0.202 0.798 24 H 0.394 0.606 25 H 0.279 0.721 26 H 0.130 0.870 27 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.766 -3.173 -0.094 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.068 5.068 3 C -0.037 4.037 4 C -0.256 4.256 5 C 0.293 3.707 6 O -0.532 6.532 7 N -0.199 5.199 8 C -0.465 4.465 9 H 0.103 0.897 10 C -0.217 4.217 11 N -0.562 5.562 12 Si 0.824 3.176 13 H -0.193 1.193 14 H -0.194 1.194 15 H -0.194 1.194 16 C -0.122 4.122 17 C -0.232 4.232 18 C 0.280 3.720 19 O -0.388 6.388 20 H 0.122 0.878 21 H 0.136 0.864 22 H 0.131 0.869 23 H 0.219 0.781 24 H 0.227 0.773 25 H 0.089 0.911 26 H 0.148 0.852 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -17.671 -3.100 -0.091 17.941 hybrid contribution 1.308 0.148 0.016 1.317 sum -16.363 -2.952 -0.075 16.627 Atomic orbital electron populations 1.22802 0.72063 1.07688 1.06287 1.44029 1.08700 1.03754 1.50269 1.22506 0.88466 0.93263 0.99478 1.19802 0.93858 0.93535 1.18402 1.17755 0.83225 0.87321 0.82394 1.90521 1.86917 1.16396 1.59341 1.41821 1.04626 1.09492 1.63939 1.19830 0.84982 0.91806 1.49867 0.89658 1.26229 1.01572 0.97892 0.95977 1.69719 1.25142 1.11552 1.49777 0.84751 0.76602 0.77802 0.78414 1.19277 1.19440 1.19421 1.21802 0.96991 0.93718 0.99732 1.20570 0.90117 0.91280 1.21276 1.22296 0.96617 0.83575 0.69479 1.90621 1.61595 1.47791 1.38783 0.87820 0.86367 0.86925 0.78096 0.77265 0.91138 0.85185 0.82596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.35 10.84 127.77 1.38 1.73 15 2 N -0.39 -8.45 3.13 -537.87 -1.68 -10.13 15 3 C 0.11 3.22 11.15 84.38 0.94 4.16 15 4 C -0.25 -10.27 6.13 -20.13 -0.12 -10.39 15 5 C 0.50 26.96 7.76 86.64 0.67 27.63 15 6 O -0.64 -37.82 16.47 -4.12 -0.07 -37.89 15 7 N -0.56 -32.32 5.27 -310.04 -1.63 -33.96 15 8 C -0.34 -20.26 9.68 84.07 0.81 -19.45 15 9 H 0.09 5.37 7.15 -2.91 -0.02 5.35 15 10 C -0.02 -0.96 5.50 84.93 0.47 -0.49 15 11 N -0.92 -52.98 13.05 21.67 0.28 -52.70 15 12 Si 1.00 44.51 29.55 68.60 2.03 46.54 15 13 H -0.27 -11.87 7.11 99.48 0.71 -11.16 15 14 H -0.27 -11.40 7.11 99.48 0.71 -10.69 15 15 H -0.27 -11.39 7.11 99.48 0.71 -10.68 15 16 C -0.10 -3.66 10.01 22.88 0.23 -3.43 15 17 C -0.12 -3.44 6.68 38.89 0.26 -3.18 15 18 C 0.42 9.39 11.03 68.64 0.76 10.14 15 19 O -0.51 -16.85 17.61 -3.45 -0.06 -16.91 15 20 H 0.10 0.39 8.14 -2.39 -0.02 0.37 15 21 H 0.12 0.19 7.27 -2.39 -0.02 0.17 15 22 H 0.11 0.42 8.13 -2.38 -0.02 0.40 15 23 H 0.20 5.07 8.06 -2.91 -0.02 5.04 15 24 H 0.39 22.07 6.87 -92.70 -0.64 21.43 15 25 H 0.28 14.86 8.31 -92.71 -0.77 14.09 15 26 H 0.13 5.41 7.53 -2.91 -0.02 5.39 15 27 H 0.16 1.44 7.31 -2.91 -0.02 1.42 15 Total: -1.00 -82.02 253.96 4.84 -77.19 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: 0.57 Total: 21.14 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 5.40 Total: 6.72 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -3.03 Total: -96.78 kcal Atomic # 8 Polarization: -54.67 SS G_CDS: -0.13 Total: -54.80 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -82.02 4.84 -77.19 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464723497.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.707 kcal (2) G-P(sol) polarization free energy of solvation -82.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds