Wall clock time and date at job start Thu Apr 9 2020 14:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35896 * 116.99735 * 2 1 4 4 C 1.38759 * 120.05680 * 0.02562 * 3 2 1 5 5 C 1.38127 * 119.94171 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05928 * 0.02562 * 5 4 3 7 7 C 1.38245 * 120.10954 * 359.96527 * 6 5 4 8 8 C 1.50697 * 119.97149 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47325 * 89.99232 * 8 7 6 10 10 H 1.08993 * 109.47662 * 305.00065 * 9 8 7 11 11 O 1.42903 * 109.46670 * 65.00638 * 9 8 7 12 12 C 1.50706 * 109.46931 * 184.99730 * 9 8 7 13 13 H 1.07999 * 120.00193 * 0.02562 * 12 9 8 14 14 C 1.37879 * 119.99398 * 180.02562 * 12 9 8 15 15 N 1.31514 * 119.99350 * 180.02562 * 14 12 9 16 16 Si 1.86798 * 120.00608 * 0.02562 * 14 12 9 17 17 H 1.48493 * 109.47326 * 270.00340 * 16 14 12 18 18 H 1.48506 * 109.46545 * 30.00090 * 16 14 12 19 19 H 1.48498 * 109.47210 * 149.99801 * 16 14 12 20 20 C 1.38167 * 120.05687 * 0.26974 * 7 6 5 21 21 H 1.08993 * 109.47710 * 60.00038 * 1 2 3 22 22 H 1.09000 * 109.47158 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47411 * 299.99840 * 1 2 3 24 24 H 1.07992 * 120.02916 * 0.03480 * 4 3 2 25 25 H 1.08007 * 119.96722 * 180.02562 * 5 4 3 26 26 H 1.07992 * 119.94509 * 179.97438 * 6 5 4 27 27 H 1.09006 * 109.47306 * 329.99694 * 8 7 6 28 28 H 1.09000 * 109.47114 * 209.99827 * 8 7 6 29 29 H 0.96695 * 114.00613 * 60.00174 * 11 9 8 30 30 H 0.97005 * 119.99661 * 179.97438 * 15 14 12 31 31 H 1.08007 * 120.02563 * 179.75009 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3753 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3017 3.6759 -0.0016 7 6 4.0558 2.5172 -0.0020 8 6 5.5606 2.5983 -0.0043 9 6 6.0721 2.6269 1.4374 10 1 5.5937 3.4445 1.9766 11 8 5.7614 1.3877 2.0777 12 6 7.5652 2.8314 1.4367 13 1 8.0962 2.9313 0.5015 14 6 8.2534 2.8908 2.6300 15 7 9.5563 3.0697 2.6294 16 14 7.3352 2.7172 4.2475 17 1 6.9015 4.0576 4.7168 18 1 6.1441 1.8525 4.0501 19 1 8.2300 2.1033 5.2612 20 6 3.4310 1.2849 -0.0063 21 1 -0.3634 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.2127 2.3204 0.0015 25 1 1.3337 4.5114 0.0008 26 1 3.7920 4.6381 -0.0024 27 1 5.8748 3.5062 -0.5193 28 1 5.9705 1.7288 -0.5181 29 1 6.1551 0.6147 1.6506 30 1 10.0404 3.1118 3.4689 31 1 4.0206 0.3800 -0.0107 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041205192.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:06 Heat of formation + Delta-G solvation = -68.281917 kcal Electronic energy + Delta-G solvation = -14817.050342 eV Core-core repulsion = 12256.735983 eV Total energy + Delta-G solvation = -2560.314359 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.91192 -37.66995 -35.94137 -32.22513 -31.95377 -30.29782 -28.33531 -27.22568 -25.20945 -22.25843 -21.47529 -20.19237 -17.78975 -16.86038 -16.05844 -15.71828 -15.65443 -14.77363 -14.46187 -14.26658 -13.59102 -13.34417 -12.91438 -12.82295 -12.39977 -11.94620 -11.63653 -11.26763 -11.06324 -11.05324 -10.78267 -10.54957 -10.16131 -10.04749 -9.03938 -8.66571 -8.52594 -8.16634 -7.85352 -6.11198 -4.22296 1.66248 1.75075 3.38724 3.41287 3.50697 3.78452 4.08631 4.56183 4.92369 5.08797 5.09126 5.15059 5.23077 5.37059 5.43528 5.66098 5.70849 5.86005 5.91713 6.16554 6.34420 6.36486 6.53441 6.69618 6.77157 7.00571 7.06825 7.40909 7.58943 7.62630 8.30913 8.84945 9.06476 9.53980 10.99388 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.042328 B = 0.007052 C = 0.006743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 661.344391 B = 3969.466822 C = 4151.286357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.320 6.320 3 C 0.121 3.879 4 C -0.225 4.225 5 C -0.084 4.084 6 C -0.159 4.159 7 C -0.019 4.019 8 C -0.102 4.102 9 C 0.201 3.799 10 H 0.055 0.945 11 O -0.578 6.578 12 C -0.564 4.564 13 H 0.073 0.927 14 C 0.084 3.916 15 N -0.894 5.894 16 Si 0.869 3.131 17 H -0.288 1.288 18 H -0.216 1.216 19 H -0.296 1.296 20 C -0.138 4.138 21 H 0.051 0.949 22 H 0.095 0.905 23 H 0.052 0.948 24 H 0.120 0.880 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.355 0.645 30 H 0.265 0.735 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.861 -2.774 -5.461 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.244 4.244 5 C -0.102 4.102 6 C -0.177 4.177 7 C -0.019 4.019 8 C -0.140 4.140 9 C 0.144 3.856 10 H 0.073 0.927 11 O -0.384 6.384 12 C -0.602 4.602 13 H 0.091 0.909 14 C -0.121 4.121 15 N -0.531 5.531 16 Si 0.695 3.305 17 H -0.214 1.214 18 H -0.138 1.138 19 H -0.223 1.223 20 C -0.157 4.157 21 H 0.070 0.930 22 H 0.114 0.886 23 H 0.071 0.929 24 H 0.138 0.862 25 H 0.137 0.863 26 H 0.140 0.860 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.201 0.799 30 H 0.074 0.926 31 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -16.968 -2.557 -4.966 17.864 hybrid contribution -0.192 -0.077 0.502 0.543 sum -17.160 -2.635 -4.463 17.926 Atomic orbital electron populations 1.22970 0.79086 1.03417 1.01066 1.86060 1.20830 1.27416 1.89086 1.19019 0.92390 0.83780 0.97144 1.21056 0.99333 0.92592 1.11428 1.20830 0.94612 0.96606 0.98175 1.21019 0.93533 0.98440 1.04723 1.19996 0.96930 0.91753 0.93239 1.21382 0.88440 1.02847 1.01338 1.19728 0.94776 0.84109 0.87016 0.92718 1.86696 1.77144 1.17020 1.57529 1.21561 0.91051 1.52678 0.94876 0.90881 1.24996 0.94594 0.92532 0.99948 1.69961 1.07417 1.48236 1.27468 0.87054 0.82365 0.79182 0.81870 1.21446 1.13843 1.22260 1.20300 0.90770 0.98542 1.06051 0.93003 0.88642 0.92907 0.86242 0.86346 0.85973 0.90568 0.91235 0.79911 0.92606 0.85411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.32 -4.67 10.50 -19.41 -0.20 -4.87 16 3 C 0.12 1.93 6.69 -39.21 -0.26 1.67 16 4 C -0.23 -3.19 9.04 -39.43 -0.36 -3.54 16 5 C -0.08 -1.20 10.04 -39.60 -0.40 -1.60 16 6 C -0.16 -2.58 9.70 -39.56 -0.38 -2.96 16 7 C -0.02 -0.34 4.96 -104.65 -0.52 -0.86 16 8 C -0.10 -1.99 4.97 -27.88 -0.14 -2.13 16 9 C 0.20 4.69 2.30 -27.88 -0.06 4.63 16 10 H 0.06 1.34 7.57 -51.93 -0.39 0.94 16 11 O -0.58 -13.22 9.65 -35.23 -0.34 -13.56 16 12 C -0.56 -15.60 9.34 -34.44 -0.32 -15.92 16 13 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 14 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 15 N -0.89 -27.37 13.96 55.43 0.77 -26.59 16 16 Si 0.87 22.10 26.99 -169.99 -4.59 17.51 16 17 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 18 H -0.22 -5.41 5.30 56.52 0.30 -5.11 16 19 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 20 C -0.14 -2.39 9.35 -39.43 -0.37 -2.76 16 21 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 22 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 24 H 0.12 1.35 6.30 -52.49 -0.33 1.02 16 25 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 26 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.08 1.44 8.09 -51.93 -0.42 1.02 16 28 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 29 H 0.35 7.16 9.04 45.56 0.41 7.57 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.13 2.15 8.06 -52.48 -0.42 1.72 16 LS Contribution 265.29 15.07 4.00 4.00 Total: -1.00 -32.10 265.29 -5.57 -37.68 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -3.29 Total: 5.72 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -1.92 Total: -19.88 kcal Atomic # 7 Polarization: -27.37 SS G_CDS: 0.77 Total: -26.59 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.54 Total: -18.43 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.59 Total: 17.51 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -32.10 -5.57 -37.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041205192.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.607 kcal (2) G-P(sol) polarization free energy of solvation -32.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds