Wall clock time and date at job start Thu Apr 9 2020 14:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08992 * 110.81028 * 2 1 4 4 O 1.43757 * 110.74270 * 123.31426 * 2 1 3 5 5 C 1.36138 * 109.29030 * 145.88859 * 4 2 1 6 6 C 1.39244 * 129.85395 * 161.42799 * 5 4 2 7 7 C 1.38151 * 120.22375 * 179.58887 * 6 5 4 8 8 F 1.35099 * 119.85270 * 180.02562 * 7 6 5 9 9 C 1.38522 * 120.29767 * 0.02562 * 7 6 5 10 10 C 1.38315 * 119.73506 * 0.18200 * 9 7 6 11 11 C 1.37754 * 120.01245 * 359.97438 * 10 9 7 12 12 C 1.51651 * 132.14566 * 179.60382 * 11 10 9 13 13 H 1.09005 * 110.97542 * 313.89953 * 12 11 10 14 14 C 1.50699 * 110.94546 * 77.58288 * 12 11 10 15 15 H 1.08005 * 120.00131 * 47.95709 * 14 12 11 16 16 C 1.37878 * 120.00235 * 227.69190 * 14 12 11 17 17 N 1.31514 * 119.99610 * 0.26651 * 16 14 12 18 18 Si 1.86798 * 120.00542 * 180.27040 * 16 14 12 19 19 H 1.48509 * 109.46890 * 59.99614 * 18 16 14 20 20 H 1.48497 * 109.47183 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47194 * 300.00102 * 18 16 14 22 22 H 1.08998 * 109.47203 * 189.20605 * 1 2 3 23 23 H 1.08994 * 109.46995 * 309.20758 * 1 2 3 24 24 H 1.09004 * 109.46814 * 69.20809 * 1 2 3 25 25 H 1.07996 * 119.89237 * 359.56387 * 6 5 4 26 26 H 1.07993 * 120.13448 * 180.15422 * 9 7 6 27 27 H 1.08004 * 119.99270 * 179.97438 * 10 9 7 28 28 H 0.97002 * 120.00320 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9173 1.0188 0.0000 4 8 2.0392 -0.7384 1.1235 5 6 3.1934 -1.3646 0.7643 6 6 4.2080 -1.8907 1.5597 7 6 5.3029 -2.4998 0.9777 8 9 6.2828 -3.0080 1.7566 9 6 5.4006 -2.5917 -0.4010 10 6 4.3979 -2.0671 -1.1963 11 6 3.3073 -1.4567 -0.6170 12 6 2.0783 -0.7943 -1.2090 13 1 2.3508 -0.1239 -2.0242 14 6 1.0817 -1.8250 -1.6732 15 1 0.8109 -2.6450 -1.0245 16 6 0.5114 -1.7183 -2.9240 17 7 0.8411 -0.7199 -3.7139 18 14 -0.7297 -2.9917 -3.4965 19 1 -1.8918 -3.0010 -2.5719 20 1 -1.1906 -2.6525 -4.8668 21 1 -0.0937 -4.3336 -3.5056 22 1 -0.3633 -1.0144 0.1644 23 1 -0.3633 0.6496 0.7963 24 1 -0.3633 0.3648 -0.9608 25 1 4.1391 -1.8219 2.6353 26 1 6.2565 -3.0706 -0.8532 27 1 4.4701 -2.1361 -2.2718 28 1 0.4396 -0.6446 -4.5938 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259781596.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:12 Heat of formation + Delta-G solvation = -73.770657 kcal Electronic energy + Delta-G solvation = -14900.030307 eV Core-core repulsion = 12216.017633 eV Total energy + Delta-G solvation = -2684.012674 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.87332 -41.93418 -38.12036 -35.59413 -33.12919 -31.48810 -31.11134 -27.96211 -26.13062 -23.73948 -22.47140 -21.97460 -19.20481 -18.33137 -17.73927 -17.14356 -16.68546 -16.58602 -16.22424 -15.54721 -15.25799 -14.61544 -14.32016 -13.97536 -13.67042 -13.57213 -13.02119 -12.79594 -12.71690 -12.53062 -12.16312 -12.05735 -11.59189 -11.35550 -11.15024 -10.64658 -9.75554 -9.01557 -8.17823 -6.28981 0.26433 0.34863 1.42155 1.43675 1.51001 2.30050 2.38256 2.70193 3.08298 3.44650 3.85999 4.04342 4.15493 4.22269 4.28353 4.32605 4.65608 4.68833 5.03075 5.06393 5.13001 5.24889 5.35204 5.40618 5.53046 5.64601 5.71752 5.80314 6.14221 6.34460 6.79746 7.35742 8.87138 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.033650 B = 0.009426 C = 0.008209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.897233 B = 2969.907658 C = 3410.262684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.069 3.931 3 H 0.075 0.925 4 O -0.316 6.316 5 C 0.106 3.894 6 C -0.184 4.184 7 C 0.109 3.891 8 F -0.137 7.137 9 C -0.173 4.173 10 C -0.057 4.057 11 C -0.163 4.163 12 C 0.040 3.960 13 H 0.066 0.934 14 C -0.504 4.504 15 H 0.043 0.957 16 C 0.033 3.967 17 N -0.916 5.916 18 Si 0.948 3.052 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.275 1.275 22 H 0.053 0.947 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.148 0.852 26 H 0.163 0.837 27 H 0.133 0.867 28 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.711 -0.860 5.280 7.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.014 3.986 3 H 0.092 0.908 4 O -0.231 6.231 5 C 0.060 3.940 6 C -0.204 4.204 7 C 0.089 3.911 8 F -0.116 7.116 9 C -0.192 4.192 10 C -0.076 4.076 11 C -0.164 4.164 12 C 0.022 3.978 13 H 0.084 0.916 14 C -0.542 4.542 15 H 0.061 0.939 16 C -0.168 4.168 17 N -0.554 5.554 18 Si 0.774 3.226 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.201 1.201 22 H 0.072 0.928 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.166 0.834 26 H 0.180 0.820 27 H 0.151 0.849 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.566 -0.780 5.329 7.061 hybrid contribution -0.551 -0.587 -0.501 0.948 sum 4.014 -1.367 4.828 6.426 Atomic orbital electron populations 1.21446 0.91661 1.01957 1.01386 1.23776 0.96703 0.93820 0.84305 0.90766 1.86689 1.34490 1.62426 1.39449 1.19421 0.87288 0.94445 0.92870 1.20043 0.92805 1.06611 1.00916 1.17017 0.86508 0.98903 0.88640 1.91467 1.60145 1.85075 1.74898 1.21162 1.01922 1.04994 0.91098 1.20285 0.91517 0.95202 1.00551 1.21804 0.97632 1.02645 0.94355 1.19254 0.89450 0.94942 0.94185 0.91565 1.20762 1.23186 1.09797 1.00415 0.93853 1.25565 0.97917 0.96956 0.96346 1.69952 1.44151 1.31524 1.09733 0.85751 0.79690 0.79580 0.77600 1.19356 1.20571 1.20063 0.92821 0.91773 0.91598 0.83401 0.81965 0.84874 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.30 8.61 71.98 0.62 -3.68 15 2 C 0.07 2.98 4.17 31.18 0.13 3.11 15 3 H 0.07 2.94 8.14 -2.39 -0.02 2.92 15 4 O -0.32 -13.67 10.81 -95.12 -1.03 -14.70 15 5 C 0.11 4.41 7.04 22.67 0.16 4.57 15 6 C -0.18 -6.55 10.04 22.49 0.23 -6.32 15 7 C 0.11 3.58 7.28 22.32 0.16 3.74 15 8 F -0.14 -4.16 17.26 44.97 0.78 -3.38 15 9 C -0.17 -5.56 10.05 22.36 0.22 -5.33 15 10 C -0.06 -2.19 10.03 22.17 0.22 -1.97 15 11 C -0.16 -7.16 5.61 -19.52 -0.11 -7.27 15 12 C 0.04 1.96 3.27 -11.40 -0.04 1.92 15 13 H 0.07 3.50 7.06 -2.38 -0.02 3.48 15 14 C -0.50 -26.20 6.40 25.60 0.16 -26.04 15 15 H 0.04 2.34 7.81 -2.91 -0.02 2.32 15 16 C 0.03 1.69 5.46 84.65 0.46 2.15 15 17 N -0.92 -49.31 12.67 21.45 0.27 -49.04 15 18 Si 0.95 41.31 29.54 68.60 2.03 43.34 15 19 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 20 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 21 H -0.28 -11.94 7.11 99.48 0.71 -11.23 15 22 H 0.05 2.28 7.37 -2.39 -0.02 2.26 15 23 H 0.06 2.12 8.14 -2.39 -0.02 2.10 15 24 H 0.07 2.78 8.08 -2.39 -0.02 2.76 15 25 H 0.15 4.56 8.06 -2.91 -0.02 4.53 15 26 H 0.16 4.07 8.06 -2.91 -0.02 4.04 15 27 H 0.13 4.90 8.06 -2.91 -0.02 4.87 15 28 H 0.27 13.73 8.31 -92.71 -0.77 12.96 15 Total: -1.00 -55.22 248.63 5.44 -49.79 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: 1.16 Total: 9.11 kcal Atomic # 6 Polarization: -37.34 SS G_CDS: 2.22 Total: -35.12 kcal Atomic # 7 Polarization: -49.31 SS G_CDS: 0.27 Total: -49.04 kcal Atomic # 8 Polarization: -13.67 SS G_CDS: -1.03 Total: -14.70 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.78 Total: -3.38 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -55.22 5.44 -49.79 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259781596.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.982 kcal (2) G-P(sol) polarization free energy of solvation -55.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds