Wall clock time and date at job start Thu Apr 9 2020 14:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 110.80770 * 2 1 4 4 O 1.43769 * 110.74559 * 236.68430 * 2 1 3 5 5 C 1.36135 * 109.23843 * 213.92390 * 4 2 1 6 6 C 1.39251 * 129.86392 * 198.38002 * 5 4 2 7 7 C 1.38151 * 120.22050 * 180.94389 * 6 5 4 8 8 F 1.35100 * 119.84980 * 180.02562 * 7 6 5 9 9 C 1.38511 * 120.29989 * 0.07052 * 7 6 5 10 10 C 1.38307 * 119.74221 * 359.80914 * 9 7 6 11 11 C 1.37771 * 120.00906 * 359.97438 * 10 9 7 12 12 C 1.51655 * 132.13922 * 180.40020 * 11 10 9 13 13 H 1.09000 * 110.93554 * 282.76507 * 12 11 10 14 14 C 1.50695 * 110.93892 * 46.41385 * 12 11 10 15 15 H 1.08003 * 120.00182 * 64.82169 * 14 12 11 16 16 C 1.37880 * 120.00043 * 244.82014 * 14 12 11 17 17 N 1.31511 * 119.99721 * 354.30197 * 16 14 12 18 18 Si 1.86800 * 119.99959 * 174.57690 * 16 14 12 19 19 H 1.48496 * 109.47091 * 179.72520 * 18 16 14 20 20 H 1.48499 * 109.47033 * 299.72602 * 18 16 14 21 21 H 1.48498 * 109.46848 * 59.72702 * 18 16 14 22 22 H 1.09000 * 109.46964 * 296.68898 * 1 2 3 23 23 H 1.08997 * 109.46938 * 56.68030 * 1 2 3 24 24 H 1.08991 * 109.47300 * 176.68252 * 1 2 3 25 25 H 1.08002 * 119.88998 * 0.99598 * 6 5 4 26 26 H 1.08001 * 120.13626 * 179.78633 * 9 7 6 27 27 H 1.08002 * 120.00219 * 180.02562 * 10 9 7 28 28 H 0.97001 * 119.99761 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9173 1.0189 0.0000 4 8 2.0393 -0.7385 -1.1235 5 6 3.1956 -1.3608 -0.7644 6 6 4.2095 -1.8885 -1.5598 7 6 5.3016 -2.5025 -0.9777 8 9 6.2812 -3.0115 -1.7565 9 6 5.3963 -2.5995 0.4008 10 6 4.3936 -2.0750 1.1961 11 6 3.3062 -1.4586 0.6168 12 6 2.0781 -0.7945 1.2090 13 1 1.3568 -1.5392 1.5456 14 6 2.4572 0.1320 2.3354 15 1 3.0554 1.0087 2.1355 16 6 2.0403 -0.1395 3.6213 17 7 1.2204 -1.1423 3.8488 18 14 2.6340 0.9217 5.0393 19 1 2.0404 0.4295 6.3083 20 1 4.1148 0.8501 5.1250 21 1 2.2188 2.3292 4.8118 22 1 -0.3633 0.4616 0.9182 23 1 -0.3633 0.5645 -0.8587 24 1 -0.3633 -1.0258 -0.0595 25 1 4.1422 -1.8168 -2.6353 26 1 6.2496 -3.0832 0.8530 27 1 4.4634 -2.1480 2.2714 28 1 0.9274 -1.3335 4.7535 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259781599.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:14 Heat of formation + Delta-G solvation = -62.898437 kcal Electronic energy + Delta-G solvation = -14828.997356 eV Core-core repulsion = 12145.456136 eV Total energy + Delta-G solvation = -2683.541219 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.45211 -40.29600 -36.55613 -33.71340 -31.45568 -29.95988 -29.54061 -26.50389 -24.03470 -22.17934 -20.91193 -20.33465 -17.34214 -16.99984 -15.93187 -15.53493 -15.19573 -14.87541 -14.68246 -13.92614 -13.67557 -13.05839 -12.50511 -12.33830 -12.18917 -11.94046 -11.51666 -11.22336 -11.08460 -10.82013 -10.59443 -10.18666 -10.05129 -9.61467 -9.46246 -8.68975 -8.19162 -7.38489 -6.25471 -4.31563 1.82963 1.89206 3.19755 3.25701 3.28346 3.85099 4.20213 4.33785 4.95211 5.00770 5.39233 5.47263 5.68838 5.80641 5.85300 5.96138 6.17963 6.20987 6.44907 6.53846 6.68997 6.76807 6.86655 7.00077 7.23235 7.32321 7.41842 7.65706 7.90544 8.09873 8.77564 9.33158 10.81775 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.028846 B = 0.010029 C = 0.007968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.438614 B = 2791.133139 C = 3513.299657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.071 3.929 3 H 0.077 0.923 4 O -0.316 6.316 5 C 0.118 3.882 6 C -0.188 4.188 7 C 0.101 3.899 8 F -0.148 7.148 9 C -0.189 4.189 10 C -0.041 4.041 11 C -0.131 4.131 12 C 0.047 3.953 13 H 0.097 0.903 14 C -0.513 4.513 15 H 0.059 0.941 16 C 0.072 3.928 17 N -0.886 5.886 18 Si 0.896 3.104 19 H -0.285 1.285 20 H -0.274 1.274 21 H -0.274 1.274 22 H 0.081 0.919 23 H 0.047 0.953 24 H 0.057 0.943 25 H 0.127 0.873 26 H 0.128 0.872 27 H 0.132 0.868 28 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 -0.608 -4.993 5.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.016 3.984 3 H 0.095 0.905 4 O -0.231 6.231 5 C 0.072 3.928 6 C -0.208 4.208 7 C 0.082 3.918 8 F -0.127 7.127 9 C -0.208 4.208 10 C -0.059 4.059 11 C -0.133 4.133 12 C 0.028 3.972 13 H 0.115 0.885 14 C -0.550 4.550 15 H 0.078 0.922 16 C -0.132 4.132 17 N -0.522 5.522 18 Si 0.723 3.277 19 H -0.211 1.211 20 H -0.199 1.199 21 H -0.199 1.199 22 H 0.100 0.900 23 H 0.066 0.934 24 H 0.076 0.924 25 H 0.145 0.855 26 H 0.146 0.854 27 H 0.150 0.850 28 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.581 -0.708 -5.069 5.732 hybrid contribution 0.546 0.476 0.765 1.053 sum 3.127 -0.232 -4.305 5.326 Atomic orbital electron populations 1.21700 0.93163 1.02219 1.01912 1.23883 0.94977 0.95520 0.84061 0.90545 1.86708 1.33918 1.62503 1.39979 1.19271 0.86781 0.93806 0.92952 1.19803 0.93531 1.07592 0.99850 1.16990 0.86774 0.99674 0.88358 1.91430 1.60742 1.85367 1.75153 1.20928 1.01873 1.06605 0.91379 1.20162 0.91085 0.94455 1.00194 1.21908 0.99136 0.99147 0.93083 1.19364 0.90394 0.95395 0.92029 0.88503 1.20794 1.33894 1.09113 0.91232 0.92245 1.25015 0.93926 0.95128 0.99108 1.69872 1.31584 1.29035 1.21697 0.86589 0.79381 0.80649 0.81111 1.21071 1.19902 1.19944 0.89981 0.93357 0.92372 0.85514 0.85413 0.84969 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.59 37.16 0.36 -2.09 15 2 C 0.07 1.49 3.79 -25.83 -0.10 1.40 15 3 H 0.08 1.60 7.91 -51.93 -0.41 1.19 15 4 O -0.32 -6.74 10.81 -20.17 -0.22 -6.96 15 5 C 0.12 2.50 7.03 -38.96 -0.27 2.22 15 6 C -0.19 -3.55 10.04 -39.24 -0.39 -3.94 15 7 C 0.10 1.84 7.28 -39.51 -0.29 1.55 15 8 F -0.15 -2.54 17.26 2.25 0.04 -2.50 15 9 C -0.19 -3.40 10.04 -39.46 -0.40 -3.79 15 10 C -0.04 -0.83 9.92 -39.73 -0.39 -1.23 15 11 C -0.13 -2.94 5.68 -104.08 -0.59 -3.53 15 12 C 0.05 1.11 2.90 -91.56 -0.27 0.84 15 13 H 0.10 2.54 6.83 -51.93 -0.35 2.18 15 14 C -0.51 -13.03 8.27 -34.44 -0.28 -13.32 15 15 H 0.06 1.51 7.82 -52.48 -0.41 1.10 15 16 C 0.07 1.85 5.45 -17.82 -0.10 1.75 15 17 N -0.89 -23.67 12.68 55.43 0.70 -22.97 15 18 Si 0.90 19.87 29.54 -169.99 -5.02 14.85 15 19 H -0.29 -6.30 7.11 56.52 0.40 -5.90 15 20 H -0.27 -6.05 7.11 56.52 0.40 -5.65 15 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 22 H 0.08 1.54 8.14 -51.93 -0.42 1.11 15 23 H 0.05 0.76 8.14 -51.93 -0.42 0.34 15 24 H 0.06 1.06 8.14 -51.93 -0.42 0.64 15 25 H 0.13 2.12 8.06 -52.49 -0.42 1.69 15 26 H 0.13 1.94 8.06 -52.49 -0.42 1.52 15 27 H 0.13 2.69 8.06 -52.49 -0.42 2.27 15 28 H 0.27 6.82 8.31 -40.82 -0.34 6.48 15 LS Contribution 251.07 15.07 3.78 3.78 Total: -1.00 -26.28 251.07 -6.29 -32.57 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -2.85 Total: 1.36 kcal Atomic # 6 Polarization: -17.41 SS G_CDS: -2.73 Total: -20.13 kcal Atomic # 7 Polarization: -23.67 SS G_CDS: 0.70 Total: -22.97 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.22 Total: -6.96 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.50 kcal Atomic # 14 Polarization: 19.87 SS G_CDS: -5.02 Total: 14.85 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -26.28 -6.29 -32.57 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259781599.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.325 kcal (2) G-P(sol) polarization free energy of solvation -26.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds