Wall clock time and date at job start Thu Apr 9 2020 14:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.32909 * 122.14517 * 2 1 4 4 S 1.75730 * 109.58169 * 180.02562 * 3 2 1 5 5 C 1.75826 * 91.07890 * 0.02562 * 4 3 2 6 6 C 1.34633 * 109.96972 * 359.97438 * 5 4 3 7 7 C 1.52274 * 122.83011 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.69571 * 102.39039 * 7 6 5 9 9 C 1.50699 * 109.58625 * 222.73687 * 7 6 5 10 10 H 1.08001 * 119.99708 * 5.23020 * 9 7 6 11 11 C 1.37871 * 120.00328 * 185.22781 * 9 7 6 12 12 N 1.31516 * 120.00259 * 0.02562 * 11 9 7 13 13 Si 1.86808 * 120.00176 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.46946 * 90.00133 * 13 11 9 15 15 H 1.48501 * 109.47078 * 210.00553 * 13 11 9 16 16 H 1.48502 * 109.46740 * 330.00458 * 13 11 9 17 17 C 1.52980 * 108.80057 * 342.53272 * 7 6 5 18 18 C 1.53151 * 109.33181 * 51.15973 * 17 7 6 19 19 C 1.51416 * 125.24338 * 180.02562 * 5 4 3 20 20 H 1.09001 * 109.47652 * 276.16926 * 1 2 3 21 21 H 1.09007 * 109.47530 * 36.17476 * 1 2 3 22 22 H 1.09008 * 109.47124 * 156.17513 * 1 2 3 23 23 H 1.08001 * 125.20969 * 359.97438 * 3 2 1 24 24 H 0.96993 * 120.00349 * 179.97438 * 12 11 9 25 25 H 1.08998 * 109.50382 * 171.13000 * 17 7 6 26 26 H 1.09000 * 109.50126 * 291.19980 * 17 7 6 27 27 H 1.08998 * 109.55246 * 49.30782 * 18 17 7 28 28 H 1.09003 * 109.55664 * 169.61679 * 18 17 7 29 29 H 1.09002 * 109.59353 * 283.43908 * 19 5 4 30 30 H 1.08993 * 109.60088 * 43.91573 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1253 0.0000 4 16 3.9293 0.7431 -0.0007 5 6 3.5793 -0.9800 -0.0018 6 6 2.2477 -1.1786 -0.0010 7 6 1.6200 -2.5659 -0.0022 8 1 1.2687 -2.8111 1.0001 9 6 0.4609 -2.5952 -0.9648 10 1 0.2509 -1.7351 -1.5834 11 6 -0.3314 -3.7198 -1.0560 12 7 -0.0761 -4.7670 -0.3024 13 14 -1.7687 -3.7557 -2.2488 14 1 -1.3095 -4.2763 -3.5615 15 1 -2.8355 -4.6382 -1.7119 16 1 -2.3034 -2.3810 -2.4209 17 6 2.6749 -3.5841 -0.4389 18 6 3.9407 -3.3951 0.4023 19 6 4.6172 -2.0824 -0.0023 20 1 -0.3634 0.1104 1.0217 21 1 -0.3634 0.8296 -0.6066 22 1 -0.3634 -0.9402 -0.4151 23 1 1.7983 2.1221 -0.0004 24 1 -0.6337 -5.5580 -0.3663 25 1 2.2890 -4.5930 -0.2939 26 1 2.9122 -3.4332 -1.4920 27 1 3.6743 -3.3562 1.4585 28 1 4.6229 -4.2270 0.2270 29 1 5.0417 -2.1844 -1.0011 30 1 5.4062 -1.8421 0.7101 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260910869.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:43 Heat of formation + Delta-G solvation = 14.185939 kcal Electronic energy + Delta-G solvation = -13352.520205 eV Core-core repulsion = 11238.534791 eV Total energy + Delta-G solvation = -2113.985414 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.62038 -34.80126 -33.07375 -29.77450 -28.80953 -27.06973 -24.69737 -21.86045 -21.49584 -19.14117 -17.29272 -16.68156 -15.86208 -14.64033 -13.83245 -13.73905 -13.35889 -12.94004 -12.73852 -12.38059 -11.83644 -11.64214 -11.28983 -10.99917 -10.94684 -10.91588 -10.62811 -10.34180 -10.16492 -9.74919 -9.70336 -9.17508 -8.77666 -8.41171 -7.65140 -7.36426 -6.07695 -4.09052 1.79050 2.39766 2.73625 3.27176 3.34636 3.36713 3.61527 4.38703 5.21801 5.44724 5.69408 5.76489 5.77832 6.08086 6.29399 6.34570 6.38927 6.44405 6.52055 6.58321 6.69208 6.95510 7.07873 7.09941 7.26044 7.53094 7.58485 7.65772 7.91095 7.98047 8.35694 8.89176 9.50384 10.99553 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.031939 B = 0.011281 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.460512 B = 2481.515438 C = 3162.191942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.062 4.062 3 C -0.240 4.240 4 S 0.011 5.989 5 C -0.195 4.195 6 C -0.058 4.058 7 C 0.104 3.896 8 H 0.046 0.954 9 C -0.510 4.510 10 H 0.070 0.930 11 C 0.064 3.936 12 N -0.886 5.886 13 Si 0.888 3.112 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.272 1.272 17 C -0.105 4.105 18 C -0.117 4.117 19 C -0.037 4.037 20 H 0.054 0.946 21 H 0.043 0.957 22 H 0.135 0.865 23 H 0.151 0.849 24 H 0.262 0.738 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.014 5.785 0.867 7.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.075 4.075 3 C -0.374 4.374 4 S 0.277 5.723 5 C -0.311 4.311 6 C -0.069 4.069 7 C 0.084 3.916 8 H 0.064 0.936 9 C -0.548 4.548 10 H 0.088 0.912 11 C -0.138 4.138 12 N -0.523 5.523 13 Si 0.715 3.285 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.197 1.197 17 C -0.143 4.143 18 C -0.157 4.157 19 C -0.076 4.076 20 H 0.072 0.928 21 H 0.062 0.938 22 H 0.152 0.848 23 H 0.168 0.832 24 H 0.072 0.928 25 H 0.100 0.900 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.301 6.537 0.910 9.125 hybrid contribution -1.956 -0.597 -0.650 2.146 sum 4.345 5.940 0.260 7.364 Atomic orbital electron populations 1.21449 0.90163 1.06622 1.01285 1.18987 0.97927 0.91383 0.99188 1.24944 0.94927 1.01645 1.15898 1.83574 1.07972 1.02822 1.77945 1.24575 0.97928 0.94868 1.13707 1.20364 0.90949 0.98247 0.97323 1.17844 0.92282 0.83777 0.97727 0.93619 1.21109 1.11651 1.00076 1.21960 0.91204 1.24964 0.97601 0.95577 0.95653 1.69914 1.39138 1.04340 1.38947 0.86652 0.82267 0.78203 0.81335 1.20650 1.21198 1.19661 1.21597 0.92753 1.02683 0.97260 1.21686 0.98655 0.94559 1.00752 1.20176 0.94444 0.92296 1.00725 0.92773 0.93777 0.84779 0.83179 0.92836 0.89954 0.93911 0.92521 0.92923 0.91505 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.50 36.00 0.34 -2.36 16 2 C -0.06 -1.29 5.59 -106.11 -0.59 -1.89 16 3 C -0.24 -4.43 10.94 28.89 0.32 -4.11 16 4 S 0.01 0.20 23.31 -107.50 -2.51 -2.30 16 5 C -0.20 -3.92 6.35 -35.23 -0.22 -4.14 16 6 C -0.06 -1.28 5.37 -104.76 -0.56 -1.84 16 7 C 0.10 2.53 2.15 -92.15 -0.20 2.33 16 8 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 9 C -0.51 -13.11 6.02 -34.44 -0.21 -13.32 16 10 H 0.07 1.79 5.87 -52.49 -0.31 1.49 16 11 C 0.06 1.68 5.34 -17.82 -0.10 1.59 16 12 N -0.89 -24.07 11.88 55.43 0.66 -23.41 16 13 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 14 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 15 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 17 C -0.10 -2.39 4.91 -26.66 -0.13 -2.52 16 18 C -0.12 -2.21 5.94 -26.59 -0.16 -2.37 16 19 C -0.04 -0.65 6.26 -27.47 -0.17 -0.83 16 20 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 21 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.13 3.00 3.70 -51.92 -0.19 2.80 16 23 H 0.15 2.36 8.06 -52.49 -0.42 1.94 16 24 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.08 2.04 6.80 -51.93 -0.35 1.69 16 26 H 0.04 0.99 8.08 -51.93 -0.42 0.57 16 27 H 0.06 1.08 8.11 -51.93 -0.42 0.66 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 252.19 15.07 3.80 3.80 Total: -1.00 -26.43 252.19 -8.54 -34.96 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -3.79 Total: 1.12 kcal Atomic # 6 Polarization: -27.78 SS G_CDS: -1.68 Total: -29.46 kcal Atomic # 7 Polarization: -24.07 SS G_CDS: 0.66 Total: -23.41 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -2.51 Total: -2.30 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -26.43 -8.54 -34.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260910869.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.151 kcal (2) G-P(sol) polarization free energy of solvation -26.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds