Wall clock time and date at job start Thu Apr 9 2020 14:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50694 * 109.47201 * 2 1 4 4 C 1.32626 * 125.17935 * 89.99945 * 3 2 1 5 5 C 1.40118 * 115.64002 * 180.02562 * 4 3 2 6 6 C 1.33817 * 113.70939 * 359.97156 * 5 4 3 7 7 S 1.75587 * 125.17534 * 270.00067 * 3 2 1 8 8 C 1.52169 * 110.69521 * 180.09917 * 6 5 4 9 9 C 1.54217 * 104.81300 * 17.36072 * 8 6 5 10 10 C 1.52799 * 136.53944 * 179.97438 * 5 4 3 11 11 H 1.08995 * 110.41334 * 43.50671 * 10 5 4 12 12 C 1.50700 * 110.32530 * 281.33839 * 10 5 4 13 13 H 1.07999 * 120.00335 * 244.37679 * 12 10 5 14 14 C 1.37881 * 119.99994 * 64.37556 * 12 10 5 15 15 N 1.31520 * 119.99844 * 359.97438 * 14 12 10 16 16 Si 1.86796 * 120.00337 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47031 * 89.99519 * 16 14 12 18 18 H 1.48495 * 109.47596 * 209.99933 * 16 14 12 19 19 H 1.48500 * 109.46866 * 330.00089 * 16 14 12 20 20 H 1.08999 * 109.47476 * 59.99712 * 1 2 3 21 21 H 1.08999 * 109.47240 * 180.02562 * 1 2 3 22 22 H 1.08999 * 109.47266 * 299.99687 * 1 2 3 23 23 H 1.09006 * 109.47236 * 239.99904 * 2 1 3 24 24 H 1.08999 * 109.47476 * 120.00288 * 2 1 3 25 25 H 1.08004 * 122.17926 * 359.97438 * 4 3 2 26 26 H 1.08998 * 110.35568 * 258.53640 * 8 6 5 27 27 H 1.09007 * 110.40289 * 136.20399 * 8 6 5 28 28 H 1.09002 * 110.97801 * 215.43573 * 9 8 6 29 29 H 1.08997 * 110.97665 * 91.69233 * 9 8 6 30 30 H 0.96999 * 120.00014 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2870 2.1412 1.0840 5 6 2.7470 3.4441 0.8518 6 6 2.8564 3.7529 -0.4456 7 16 2.3694 2.3744 -1.4352 8 6 3.3621 5.1777 -0.6186 9 6 3.9667 5.5503 0.7503 10 6 3.1690 4.6398 1.7045 11 1 3.7994 4.3133 2.5316 12 6 1.9554 5.3645 2.2269 13 1 1.7576 6.3799 1.9167 14 6 1.0974 4.7312 3.1009 15 7 1.3379 3.4945 3.4782 16 14 -0.4066 5.6297 3.7490 17 1 -1.5557 5.3918 2.8389 18 1 -0.7376 5.1260 5.1062 19 1 -0.1222 7.0856 3.8171 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3634 -1.0276 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8899 25 1 2.1480 1.7493 2.0808 26 1 2.5365 5.8459 -0.8633 27 1 4.1266 5.2180 -1.3946 28 1 3.7947 6.6020 0.9796 29 1 5.0303 5.3145 0.7843 30 1 0.7341 3.0488 4.0928 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260937826.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:49 Heat of formation + Delta-G solvation = 5.100110 kcal Electronic energy + Delta-G solvation = -13110.205495 eV Core-core repulsion = 10995.826090 eV Total energy + Delta-G solvation = -2114.379405 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.07889 -36.57552 -34.48106 -33.04526 -29.62604 -27.94933 -26.01560 -24.28577 -22.36681 -20.94182 -19.21056 -18.27722 -17.71000 -16.43077 -15.72881 -15.38577 -14.96010 -14.82365 -14.20956 -13.89444 -13.34682 -13.10270 -12.92959 -12.73393 -12.58412 -12.35863 -12.17565 -12.11430 -11.91922 -11.78177 -11.43974 -11.19851 -11.04502 -10.49042 -9.03609 -8.77200 -8.06937 -6.20811 0.41830 0.89041 1.32563 1.38908 1.40263 1.49027 2.24735 2.44253 3.20084 3.89716 4.09797 4.22325 4.26762 4.43457 4.46323 4.66501 4.88562 4.95189 5.01107 5.06836 5.13040 5.22596 5.25078 5.32977 5.43946 5.50043 5.70775 5.81587 5.94412 6.17896 6.29917 6.86914 7.44817 8.95810 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.023769 B = 0.012661 C = 0.009270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.713655 B = 2210.963514 C = 3019.783657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C -0.200 4.200 4 C -0.106 4.106 5 C -0.075 4.075 6 C -0.255 4.255 7 S 0.080 5.920 8 C -0.021 4.021 9 C -0.107 4.107 10 C 0.086 3.914 11 H -0.001 1.001 12 C -0.524 4.524 13 H 0.058 0.942 14 C 0.019 3.981 15 N -0.900 5.900 16 Si 0.948 3.052 17 H -0.283 1.283 18 H -0.283 1.283 19 H -0.266 1.266 20 H 0.052 0.948 21 H 0.085 0.915 22 H 0.034 0.966 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.121 0.879 26 H 0.068 0.932 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.896 -3.995 -7.918 8.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.316 4.316 4 C -0.136 4.136 5 C -0.087 4.087 6 C -0.371 4.371 7 S 0.344 5.656 8 C -0.060 4.060 9 C -0.146 4.146 10 C 0.066 3.934 11 H 0.017 0.983 12 C -0.562 4.562 13 H 0.076 0.924 14 C -0.181 4.181 15 N -0.538 5.538 16 Si 0.774 3.226 17 H -0.209 1.209 18 H -0.209 1.209 19 H -0.190 1.190 20 H 0.071 0.929 21 H 0.104 0.896 22 H 0.053 0.947 23 H 0.108 0.892 24 H 0.099 0.901 25 H 0.139 0.861 26 H 0.086 0.914 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.727 -4.430 -9.371 10.391 hybrid contribution -0.906 0.656 2.367 2.618 sum -0.179 -3.774 -7.004 7.958 Atomic orbital electron populations 1.21735 0.94300 1.02605 1.01233 1.20077 0.96237 0.88275 1.03511 1.24431 1.10521 1.01837 0.94810 1.19916 1.00629 0.93955 0.99116 1.21103 0.97735 0.94689 0.95139 1.25944 1.12734 1.01673 0.96710 1.82934 1.69208 1.04557 1.08878 1.20615 0.99204 0.88182 0.98023 1.22300 0.98288 0.99828 0.94154 1.18368 0.94122 0.88985 0.91970 0.98283 1.21366 1.09250 0.99227 1.26389 0.92418 1.25693 1.00304 0.95639 0.96487 1.70062 1.37895 1.12277 1.33556 0.85703 0.80012 0.79367 0.77469 1.20928 1.20863 1.18994 0.92931 0.89648 0.94668 0.89234 0.90145 0.86126 0.91354 0.89871 0.90653 0.91413 0.93241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 9.89 71.98 0.71 -3.29 16 2 C -0.04 -1.26 6.42 29.84 0.19 -1.07 16 3 C -0.20 -7.90 5.73 24.52 0.14 -7.76 16 4 C -0.11 -5.08 9.13 21.56 0.20 -4.88 16 5 C -0.08 -3.74 5.36 -19.73 -0.11 -3.85 16 6 C -0.26 -11.07 7.35 25.15 0.18 -10.88 16 7 S 0.08 2.96 23.33 -56.49 -1.32 1.64 16 8 C -0.02 -0.78 6.79 30.73 0.21 -0.57 16 9 C -0.11 -4.36 6.61 31.39 0.21 -4.15 16 10 C 0.09 4.43 2.79 -11.22 -0.03 4.40 16 11 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 12 C -0.52 -28.95 8.49 25.60 0.22 -28.73 16 13 H 0.06 3.11 7.59 -2.91 -0.02 3.08 16 14 C 0.02 1.07 5.34 84.65 0.45 1.52 16 15 N -0.90 -51.50 10.81 21.45 0.23 -51.27 16 16 Si 0.95 44.01 29.54 68.60 2.03 46.04 16 17 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 18 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 19 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 20 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 21 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 22 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 23 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 24 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 25 H 0.12 6.29 6.92 -2.91 -0.02 6.27 16 26 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 27 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 28 H 0.07 2.91 7.76 -2.39 -0.02 2.90 16 29 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 30 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -60.86 262.75 4.43 -56.43 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: 1.11 Total: 6.40 kcal Atomic # 6 Polarization: -61.63 SS G_CDS: 2.37 Total: -59.25 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: 0.23 Total: -51.27 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.32 Total: 1.64 kcal Total: -60.86 4.43 -56.43 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260937826.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.535 kcal (2) G-P(sol) polarization free energy of solvation -60.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds