Wall clock time and date at job start Thu Apr 9 2020 14:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.64429 * 2 1 4 4 C 1.53285 * 109.68829 * 239.75471 * 2 1 3 5 5 C 1.52981 * 109.41785 * 169.73830 * 4 2 1 6 6 C 1.52274 * 108.79940 * 51.16040 * 5 4 2 7 7 C 1.39211 * 123.50794 * 162.51906 * 6 5 4 8 8 C 1.32911 * 115.70903 * 180.02562 * 7 6 5 9 9 S 1.75729 * 109.57949 * 359.97438 * 8 7 6 10 10 C 1.34634 * 122.83344 * 342.54298 * 6 5 4 11 11 C 1.51408 * 124.78198 * 359.93495 * 10 6 5 12 12 H 1.09006 * 109.59995 * 103.63556 * 11 10 6 13 13 C 1.50701 * 109.60135 * 223.94668 * 11 10 6 14 14 H 1.08002 * 119.99761 * 119.68447 * 13 11 10 15 15 C 1.37871 * 119.99694 * 299.97010 * 13 11 10 16 16 N 1.31514 * 120.00482 * 359.71466 * 15 13 11 17 17 Si 1.86801 * 119.99746 * 179.72062 * 15 13 11 18 18 H 1.48504 * 109.47209 * 89.99886 * 17 15 13 19 19 H 1.48501 * 109.47358 * 209.99377 * 17 15 13 20 20 H 1.48496 * 109.47341 * 329.99989 * 17 15 13 21 21 H 1.09002 * 109.46758 * 299.74217 * 1 2 3 22 22 H 1.09006 * 109.46858 * 59.73429 * 1 2 3 23 23 H 1.08996 * 109.47288 * 179.73617 * 1 2 3 24 24 H 1.08996 * 109.45953 * 49.74077 * 4 2 1 25 25 H 1.09001 * 109.45434 * 289.72185 * 4 2 1 26 26 H 1.09006 * 109.57971 * 291.37100 * 5 4 2 27 27 H 1.08991 * 109.58452 * 170.95919 * 5 4 2 28 28 H 1.08007 * 122.14609 * 0.07670 * 7 6 5 29 29 H 1.08000 * 125.21195 * 180.02562 * 8 7 6 30 30 H 0.96995 * 120.00207 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8964 1.0265 0.0000 4 6 2.0464 -0.7270 -1.2468 5 6 3.5545 -0.5052 -1.3767 6 6 4.2177 -0.8538 -0.0511 7 6 5.5806 -1.1036 0.0841 8 6 5.9943 -1.3941 1.3134 9 16 4.6270 -1.3665 2.4169 10 6 3.5337 -0.9493 1.1046 11 6 2.0427 -0.7274 1.2466 12 1 1.5375 -1.6885 1.3428 13 6 1.7705 0.1112 2.4689 14 1 1.2762 1.0662 2.3693 15 6 2.1580 -0.3382 3.7133 16 7 2.7600 -1.5012 3.8345 17 14 1.8277 0.7047 5.2275 18 1 0.4982 0.3548 5.7892 19 1 2.8782 0.4470 6.2450 20 1 1.8438 2.1414 4.8522 21 1 -0.3633 0.5098 0.8923 22 1 -0.3633 0.5180 -0.8877 23 1 -0.3634 -1.0276 -0.0047 24 1 1.5434 -0.3344 -2.1305 25 1 1.8422 -1.7938 -1.1557 26 1 3.7505 0.5392 -1.6198 27 1 3.9515 -1.1463 -2.1636 28 1 6.2583 -1.0632 -0.7558 29 1 7.0147 -1.6127 1.5916 30 1 3.0329 -1.8172 4.7100 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993303.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:55 Heat of formation + Delta-G solvation = 3.685285 kcal Electronic energy + Delta-G solvation = -13451.835933 eV Core-core repulsion = 11337.395176 eV Total energy + Delta-G solvation = -2114.440756 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.16698 -34.89247 -33.08408 -30.28508 -28.83772 -25.74900 -24.52968 -22.02296 -20.92465 -19.31097 -16.97223 -16.67545 -15.52883 -14.77063 -13.76286 -13.52629 -13.20831 -12.82003 -12.45954 -12.36497 -11.99718 -11.33492 -11.25412 -10.99238 -10.77289 -10.65760 -10.63418 -10.30899 -9.97607 -9.94380 -9.75285 -9.35102 -8.90462 -8.10901 -6.93061 -6.78151 -6.18463 -4.43702 2.64622 3.12033 3.22202 3.24989 3.53471 3.96748 4.05991 4.22261 5.03194 5.65661 5.69885 5.77713 6.02931 6.23371 6.32442 6.40803 6.42817 6.50590 6.61816 6.64527 6.75022 6.92082 7.00139 7.04045 7.15206 7.46468 7.54023 7.68144 7.84689 7.91287 8.13018 8.59944 9.14762 10.59753 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.024904 B = 0.015533 C = 0.010246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.040517 B = 1802.191822 C = 2732.146060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 H 0.061 0.939 4 C -0.112 4.112 5 C -0.042 4.042 6 C -0.174 4.174 7 C -0.147 4.147 8 C -0.370 4.370 9 S 0.275 5.725 10 C -0.125 4.125 11 C 0.098 3.902 12 H 0.047 0.953 13 C -0.462 4.462 14 H 0.070 0.930 15 C 0.038 3.962 16 N -0.872 5.872 17 Si 0.909 3.091 18 H -0.277 1.277 19 H -0.280 1.280 20 H -0.271 1.271 21 H 0.059 0.941 22 H 0.036 0.964 23 H 0.046 0.954 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.090 0.910 29 H 0.120 0.880 30 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.474 1.074 -4.061 4.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.098 4.098 3 H 0.080 0.920 4 C -0.150 4.150 5 C -0.082 4.082 6 C -0.186 4.186 7 C -0.177 4.177 8 C -0.506 4.506 9 S 0.540 5.460 10 C -0.245 4.245 11 C 0.079 3.921 12 H 0.065 0.935 13 C -0.501 4.501 14 H 0.088 0.912 15 C -0.155 4.155 16 N -0.518 5.518 17 Si 0.736 3.264 18 H -0.203 1.203 19 H -0.205 1.205 20 H -0.195 1.195 21 H 0.078 0.922 22 H 0.055 0.945 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.108 0.892 29 H 0.138 0.862 30 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.550 0.722 -2.296 2.469 hybrid contribution 0.416 0.667 -0.893 1.190 sum -0.133 1.389 -3.189 3.481 Atomic orbital electron populations 1.21720 0.96096 1.00895 1.00463 1.21182 0.94480 0.99374 0.94786 0.92031 1.21629 0.95232 1.00524 0.97616 1.20265 0.94453 0.99589 0.93877 1.19274 0.93179 1.11235 0.94903 1.19447 0.94620 1.07126 0.96556 1.27875 1.08313 1.09733 1.04663 1.86630 0.90107 1.64262 1.04994 1.25556 1.00817 1.03009 0.95101 1.17751 0.86064 0.96319 0.92009 0.93481 1.21672 1.33321 1.04169 0.90889 0.91189 1.25122 0.95429 0.95057 0.99921 1.67841 1.39315 1.20065 1.24612 0.86232 0.78319 0.80401 0.81439 1.20256 1.20538 1.19525 0.92173 0.94458 0.93520 0.93209 0.92496 0.92644 0.92814 0.89229 0.86217 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.38 9.05 37.16 0.34 -2.04 16 2 C -0.08 -1.58 2.12 -90.39 -0.19 -1.77 16 3 H 0.06 1.29 8.07 -51.93 -0.42 0.87 16 4 C -0.11 -2.05 5.20 -26.59 -0.14 -2.19 16 5 C -0.04 -0.81 6.16 -27.11 -0.17 -0.97 16 6 C -0.17 -3.97 5.78 -104.75 -0.61 -4.58 16 7 C -0.15 -3.29 10.00 -41.06 -0.41 -3.70 16 8 C -0.37 -8.38 11.20 28.89 0.32 -8.05 16 9 S 0.28 6.69 18.11 -107.50 -1.95 4.74 16 10 C -0.13 -3.08 5.79 -35.24 -0.20 -3.29 16 11 C 0.10 2.36 1.88 -92.49 -0.17 2.19 16 12 H 0.05 1.23 8.12 -51.93 -0.42 0.80 16 13 C -0.46 -11.63 7.91 -34.44 -0.27 -11.91 16 14 H 0.07 1.72 7.46 -52.49 -0.39 1.33 16 15 C 0.04 0.95 4.78 -17.82 -0.09 0.87 16 16 N -0.87 -22.39 8.73 55.43 0.48 -21.90 16 17 Si 0.91 19.83 29.54 -169.99 -5.02 14.81 16 18 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 21 H 0.06 1.10 7.39 -51.93 -0.38 0.72 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 24 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 25 H 0.06 1.06 8.10 -51.93 -0.42 0.64 16 26 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 28 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 29 H 0.12 2.45 8.06 -52.49 -0.42 2.02 16 30 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 251.80 15.07 3.79 3.79 Total: -1.00 -26.07 251.80 -8.41 -34.48 By element: Atomic # 1 Polarization: 3.66 SS G_CDS: -4.13 Total: -0.47 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: -1.59 Total: -35.44 kcal Atomic # 7 Polarization: -22.39 SS G_CDS: 0.48 Total: -21.90 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.02 Total: 14.81 kcal Atomic # 16 Polarization: 6.69 SS G_CDS: -1.95 Total: 4.74 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -26.07 -8.41 -34.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993303.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.162 kcal (2) G-P(sol) polarization free energy of solvation -26.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds