Wall clock time and date at job start Thu Apr 9 2020 14:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.55427 * 2 1 4 4 C 1.53148 * 109.55711 * 120.21073 * 2 1 3 5 5 C 1.52978 * 109.30461 * 49.39094 * 4 2 1 6 6 C 1.52273 * 108.80225 * 51.17430 * 5 4 2 7 7 C 1.39212 * 123.50667 * 162.53207 * 6 5 4 8 8 C 1.32915 * 115.70417 * 180.27977 * 7 6 5 9 9 S 1.75726 * 109.58253 * 359.59603 * 8 7 6 10 10 C 1.34634 * 122.82932 * 342.53780 * 6 5 4 11 11 C 1.51410 * 124.78581 * 359.97438 * 10 6 5 12 12 H 1.08997 * 109.59741 * 103.44681 * 11 10 6 13 13 C 1.50702 * 109.72722 * 223.84306 * 11 10 6 14 14 H 1.07997 * 120.00322 * 34.46897 * 13 11 10 15 15 C 1.37880 * 119.99660 * 214.47140 * 13 11 10 16 16 N 1.31511 * 119.99943 * 184.46720 * 15 13 11 17 17 Si 1.86801 * 120.00127 * 4.46803 * 15 13 11 18 18 H 1.48498 * 109.47019 * 84.79393 * 17 15 13 19 19 H 1.48503 * 109.47137 * 204.79820 * 17 15 13 20 20 H 1.48500 * 109.46938 * 324.79984 * 17 15 13 21 21 H 1.09004 * 109.47160 * 299.78697 * 1 2 3 22 22 H 1.08999 * 109.47684 * 59.78721 * 1 2 3 23 23 H 1.09000 * 109.47592 * 179.79224 * 1 2 3 24 24 H 1.09001 * 109.50112 * 289.44021 * 4 2 1 25 25 H 1.09001 * 109.49616 * 169.33696 * 4 2 1 26 26 H 1.09007 * 109.58325 * 291.38185 * 5 4 2 27 27 H 1.09000 * 109.69951 * 171.04245 * 5 4 2 28 28 H 1.08002 * 122.14865 * 0.02562 * 7 6 5 29 29 H 1.07994 * 125.20814 * 179.72738 * 8 7 6 30 30 H 0.97004 * 120.00053 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0426 -0.7262 1.2471 5 6 1.3264 -2.0714 1.3793 6 6 1.4312 -2.8154 0.0548 7 6 1.2076 -4.1830 -0.0782 8 6 1.3469 -4.6732 -1.3057 9 16 1.7759 -3.3773 -2.4123 10 6 1.7510 -2.2052 -1.1019 11 6 2.0444 -0.7268 -1.2462 12 1 3.1197 -0.5749 -1.3397 13 6 1.3493 -0.1873 -2.4696 14 1 0.3874 -0.5816 -2.7622 15 6 1.9415 0.8097 -3.2155 16 7 1.2973 1.3419 -4.2311 17 14 3.6587 1.4046 -2.7836 18 1 4.6647 0.5190 -3.4229 19 1 3.8393 2.7944 -3.2748 20 1 3.8372 1.3734 -1.3097 21 1 -0.3634 0.5105 0.8919 22 1 -0.3634 0.5171 -0.8880 23 1 -0.3634 -1.0276 -0.0037 24 1 1.8422 -0.1190 2.1299 25 1 3.1159 -0.8929 1.1556 26 1 0.2770 -1.9043 1.6223 27 1 1.7945 -2.6610 2.1676 28 1 0.9422 -4.8064 0.7629 29 1 1.2144 -5.7090 -1.5813 30 1 1.7137 2.0436 -4.7557 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260993306.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:58 Heat of formation + Delta-G solvation = 11.727741 kcal Electronic energy + Delta-G solvation = -13440.968094 eV Core-core repulsion = 11326.876084 eV Total energy + Delta-G solvation = -2114.092009 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.88013 -35.23876 -32.69201 -30.35501 -29.01780 -26.19977 -24.95009 -22.22344 -21.47839 -19.29414 -17.07731 -16.72662 -16.20360 -14.52896 -14.29045 -14.21065 -13.69317 -12.98456 -12.63750 -12.46484 -12.05883 -11.74373 -11.34546 -11.28782 -10.97952 -10.77729 -10.50938 -10.19794 -10.06104 -9.89718 -9.64435 -9.44754 -9.01494 -8.60961 -7.70808 -7.50827 -6.13768 -4.13530 1.83121 2.47812 2.93317 3.24448 3.32631 3.34231 3.39075 4.35816 5.14360 5.34259 5.56672 5.64588 5.74141 5.86670 6.05018 6.17898 6.24136 6.27791 6.38443 6.45433 6.59414 6.66354 6.74401 7.00430 7.01804 7.07932 7.26713 7.35454 7.40260 7.68707 8.45115 8.91964 9.47508 10.98639 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.028167 B = 0.013321 C = 0.010744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.847913 B = 2101.451004 C = 2605.573508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.080 4.080 3 H 0.062 0.938 4 C -0.120 4.120 5 C -0.044 4.044 6 C -0.157 4.157 7 C -0.122 4.122 8 C -0.262 4.262 9 S 0.114 5.886 10 C -0.102 4.102 11 C 0.077 3.923 12 H 0.047 0.953 13 C -0.506 4.506 14 H 0.080 0.920 15 C 0.077 3.923 16 N -0.893 5.893 17 Si 0.867 3.133 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.263 1.263 21 H 0.028 0.972 22 H 0.071 0.929 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.121 0.879 29 H 0.150 0.850 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.392 -6.756 8.543 10.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.100 4.100 3 H 0.081 0.919 4 C -0.157 4.157 5 C -0.083 4.083 6 C -0.168 4.168 7 C -0.154 4.154 8 C -0.397 4.397 9 S 0.380 5.620 10 C -0.221 4.221 11 C 0.057 3.943 12 H 0.064 0.936 13 C -0.544 4.544 14 H 0.098 0.902 15 C -0.125 4.125 16 N -0.530 5.530 17 Si 0.694 3.306 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.187 1.187 21 H 0.047 0.953 22 H 0.090 0.910 23 H 0.067 0.933 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.139 0.861 29 H 0.168 0.832 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.691 -6.597 6.781 9.610 hybrid contribution 0.586 0.175 1.563 1.678 sum 2.277 -6.422 8.344 10.772 Atomic orbital electron populations 1.21723 0.95402 1.01091 1.00591 1.21336 0.96462 0.98554 0.93674 0.91931 1.21681 0.99597 0.95819 0.98623 1.20367 1.00432 0.94929 0.92577 1.19515 1.08534 0.92991 0.95776 1.19853 1.03705 0.94811 0.97008 1.25304 1.13655 1.02878 0.97880 1.84376 1.68479 0.97108 1.12005 1.25551 1.02316 1.00694 0.93493 1.18149 0.96494 0.84340 0.95346 0.93552 1.20842 1.06519 1.19864 1.07144 0.90241 1.25003 0.97239 0.95695 0.94608 1.69881 1.37575 1.26467 1.19085 0.87010 0.85762 0.78329 0.79530 1.20003 1.21336 1.18728 0.95277 0.91017 0.93319 0.92758 0.92671 0.91325 0.92344 0.86088 0.83232 0.92504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.01 37.16 0.30 -2.30 16 2 C -0.08 -1.63 2.87 -90.46 -0.26 -1.89 16 3 H 0.06 1.32 8.02 -51.93 -0.42 0.91 16 4 C -0.12 -2.05 5.54 -26.67 -0.15 -2.19 16 5 C -0.04 -0.71 5.52 -27.11 -0.15 -0.86 16 6 C -0.16 -2.95 5.06 -104.76 -0.53 -3.48 16 7 C -0.12 -2.07 10.00 -41.06 -0.41 -2.48 16 8 C -0.26 -4.42 11.20 28.89 0.32 -4.09 16 9 S 0.11 2.26 22.83 -107.50 -2.45 -0.19 16 10 C -0.10 -2.18 5.39 -35.24 -0.19 -2.37 16 11 C 0.08 1.78 1.88 -92.49 -0.17 1.60 16 12 H 0.05 1.11 5.33 -51.93 -0.28 0.83 16 13 C -0.51 -13.45 6.77 -34.44 -0.23 -13.68 16 14 H 0.08 2.34 8.03 -52.49 -0.42 1.92 16 15 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 16 N -0.89 -26.34 13.96 55.43 0.77 -25.57 16 17 Si 0.87 20.82 26.98 -169.99 -4.59 16.24 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.26 -6.00 6.72 56.52 0.38 -5.62 16 21 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 22 H 0.07 1.61 6.98 -51.93 -0.36 1.24 16 23 H 0.05 0.96 5.62 -51.93 -0.29 0.67 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.95 8.10 -51.93 -0.42 0.52 16 26 H 0.07 1.07 6.88 -51.92 -0.36 0.71 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.12 1.72 8.06 -52.49 -0.42 1.29 16 29 H 0.15 2.08 8.06 -52.49 -0.42 1.65 16 30 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 250.23 15.07 3.77 3.77 Total: -1.00 -28.20 250.23 -7.88 -36.08 By element: Atomic # 1 Polarization: 3.18 SS G_CDS: -3.82 Total: -0.63 kcal Atomic # 6 Polarization: -28.13 SS G_CDS: -1.57 Total: -29.70 kcal Atomic # 7 Polarization: -26.34 SS G_CDS: 0.77 Total: -25.57 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -4.59 Total: 16.24 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -2.45 Total: -0.19 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -28.20 -7.88 -36.08 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993306.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.810 kcal (2) G-P(sol) polarization free energy of solvation -28.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds