Wall clock time and date at job start Thu Apr 9 2020 14:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.55427 * 2 1 4 4 C 1.53148 * 109.55711 * 120.21073 * 2 1 3 5 5 C 1.52978 * 109.30461 * 49.39094 * 4 2 1 6 6 C 1.52273 * 108.80225 * 51.17430 * 5 4 2 7 7 C 1.39212 * 123.50667 * 162.53207 * 6 5 4 8 8 C 1.32915 * 115.70417 * 180.27977 * 7 6 5 9 9 S 1.75726 * 109.58253 * 359.59603 * 8 7 6 10 10 C 1.34634 * 122.82932 * 342.53780 * 6 5 4 11 11 C 1.51410 * 124.78581 * 359.97438 * 10 6 5 12 12 H 1.08997 * 109.59741 * 103.44681 * 11 10 6 13 13 C 1.50702 * 109.72722 * 223.84306 * 11 10 6 14 14 H 1.07997 * 120.00322 * 34.46897 * 13 11 10 15 15 C 1.37880 * 119.99660 * 214.47140 * 13 11 10 16 16 N 1.31511 * 119.99943 * 184.46720 * 15 13 11 17 17 Si 1.86801 * 120.00127 * 4.46803 * 15 13 11 18 18 H 1.48498 * 109.47019 * 84.79393 * 17 15 13 19 19 H 1.48503 * 109.47137 * 204.79820 * 17 15 13 20 20 H 1.48500 * 109.46938 * 324.79984 * 17 15 13 21 21 H 1.09004 * 109.47160 * 299.78697 * 1 2 3 22 22 H 1.08999 * 109.47684 * 59.78721 * 1 2 3 23 23 H 1.09000 * 109.47592 * 179.79224 * 1 2 3 24 24 H 1.09001 * 109.50112 * 289.44021 * 4 2 1 25 25 H 1.09001 * 109.49616 * 169.33696 * 4 2 1 26 26 H 1.09007 * 109.58325 * 291.38185 * 5 4 2 27 27 H 1.09000 * 109.69951 * 171.04245 * 5 4 2 28 28 H 1.08002 * 122.14865 * 0.02562 * 7 6 5 29 29 H 1.07994 * 125.20814 * 179.72738 * 8 7 6 30 30 H 0.97004 * 120.00053 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8948 1.0271 0.0000 4 6 2.0426 -0.7262 1.2471 5 6 1.3264 -2.0714 1.3793 6 6 1.4312 -2.8154 0.0548 7 6 1.2076 -4.1830 -0.0782 8 6 1.3469 -4.6732 -1.3057 9 16 1.7759 -3.3773 -2.4123 10 6 1.7510 -2.2052 -1.1019 11 6 2.0444 -0.7268 -1.2462 12 1 3.1197 -0.5749 -1.3397 13 6 1.3493 -0.1873 -2.4696 14 1 0.3874 -0.5816 -2.7622 15 6 1.9415 0.8097 -3.2155 16 7 1.2973 1.3419 -4.2311 17 14 3.6587 1.4046 -2.7836 18 1 4.6647 0.5190 -3.4229 19 1 3.8393 2.7944 -3.2748 20 1 3.8372 1.3734 -1.3097 21 1 -0.3634 0.5105 0.8919 22 1 -0.3634 0.5171 -0.8880 23 1 -0.3634 -1.0276 -0.0037 24 1 1.8422 -0.1190 2.1299 25 1 3.1159 -0.8929 1.1556 26 1 0.2770 -1.9043 1.6223 27 1 1.7945 -2.6610 2.1676 28 1 0.9422 -4.8064 0.7629 29 1 1.2144 -5.7090 -1.5813 30 1 1.7137 2.0436 -4.7557 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260993306.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:58 Heat of formation + Delta-G solvation = -3.914811 kcal Electronic energy + Delta-G solvation = -13441.646406 eV Core-core repulsion = 11326.876084 eV Total energy + Delta-G solvation = -2114.770321 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.37516 -36.75854 -34.64199 -32.03394 -30.51466 -27.82070 -26.67667 -23.71199 -23.10630 -20.79860 -18.88283 -18.43135 -17.79550 -16.26548 -15.77055 -15.70939 -15.32472 -14.64126 -14.47019 -13.98159 -13.57736 -13.20674 -12.94268 -12.82368 -12.69682 -12.35163 -12.23229 -11.85645 -11.71063 -11.55036 -11.28009 -11.08997 -10.79860 -10.62242 -9.23118 -9.01066 -8.27628 -6.29186 0.37858 1.01180 1.31702 1.33486 1.42887 1.48763 1.99935 2.33049 3.07473 4.00568 4.11036 4.25742 4.40671 4.46580 4.57131 4.70483 4.80209 4.89555 4.98739 5.09466 5.12354 5.13313 5.30130 5.37282 5.49854 5.52457 5.61810 5.78115 5.84689 5.92617 6.33288 6.75409 7.33672 8.88824 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.028167 B = 0.013321 C = 0.010744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.847913 B = 2101.451004 C = 2605.573508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.084 4.084 3 H 0.051 0.949 4 C -0.114 4.114 5 C -0.044 4.044 6 C -0.140 4.140 7 C -0.128 4.128 8 C -0.235 4.235 9 S 0.044 5.956 10 C -0.147 4.147 11 C 0.076 3.924 12 H 0.035 0.965 13 C -0.489 4.489 14 H 0.034 0.966 15 C 0.018 3.982 16 N -0.945 5.945 17 Si 0.925 3.075 18 H -0.272 1.272 19 H -0.287 1.287 20 H -0.241 1.241 21 H 0.060 0.940 22 H 0.030 0.970 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.093 0.907 28 H 0.162 0.838 29 H 0.184 0.816 30 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.043 -8.333 11.952 14.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.105 4.105 3 H 0.069 0.931 4 C -0.151 4.151 5 C -0.083 4.083 6 C -0.152 4.152 7 C -0.158 4.158 8 C -0.370 4.370 9 S 0.310 5.690 10 C -0.264 4.264 11 C 0.056 3.944 12 H 0.053 0.947 13 C -0.527 4.527 14 H 0.052 0.948 15 C -0.179 4.179 16 N -0.586 5.586 17 Si 0.750 3.250 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.165 1.165 21 H 0.079 0.921 22 H 0.049 0.951 23 H 0.066 0.934 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.112 0.888 28 H 0.180 0.820 29 H 0.201 0.799 30 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.345 -8.183 10.215 13.297 hybrid contribution 0.272 0.525 0.531 0.794 sum 2.617 -7.659 10.746 13.453 Atomic orbital electron populations 1.21595 0.95230 1.00824 1.00143 1.21297 0.96606 0.98108 0.94445 0.93059 1.21632 0.99525 0.96435 0.97511 1.20522 1.01476 0.94434 0.91878 1.20035 1.05211 0.94001 0.95942 1.20230 1.03083 0.94340 0.98150 1.25649 1.11587 1.03084 0.96656 1.84562 1.70148 0.99757 1.14494 1.25301 1.06655 0.99811 0.94672 1.18030 0.95343 0.86295 0.94747 0.94713 1.20925 1.04646 1.18754 1.08394 0.94762 1.25780 1.01168 0.96279 0.94698 1.70031 1.39594 1.27924 1.21003 0.86056 0.80921 0.77572 0.80480 1.19801 1.21266 1.16464 0.92070 0.95061 0.93381 0.89668 0.92680 0.90036 0.88841 0.82025 0.79852 0.92650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.69 8.01 71.98 0.58 -4.11 16 2 C -0.08 -3.32 2.87 -10.69 -0.03 -3.36 16 3 H 0.05 2.11 8.02 -2.39 -0.02 2.09 16 4 C -0.11 -3.43 5.54 30.64 0.17 -3.26 16 5 C -0.04 -1.21 5.52 30.35 0.17 -1.04 16 6 C -0.14 -4.80 5.06 -19.95 -0.10 -4.90 16 7 C -0.13 -3.75 10.00 21.33 0.21 -3.54 16 8 C -0.23 -7.20 11.20 66.65 0.75 -6.45 16 9 S 0.04 1.78 22.83 -56.49 -1.29 0.49 16 10 C -0.15 -6.15 5.39 25.09 0.14 -6.02 16 11 C 0.08 3.53 1.88 -12.01 -0.02 3.51 16 12 H 0.04 1.66 5.33 -2.39 -0.01 1.65 16 13 C -0.49 -27.24 6.77 25.60 0.17 -27.06 16 14 H 0.03 2.16 8.03 -2.91 -0.02 2.14 16 15 C 0.02 1.04 5.47 84.66 0.46 1.50 16 16 N -0.95 -58.76 13.96 21.45 0.30 -58.46 16 17 Si 0.93 43.97 26.98 68.60 1.85 45.82 16 18 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 19 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 20 H -0.24 -10.50 6.72 99.48 0.67 -9.83 16 21 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 22 H 0.03 1.43 6.98 -2.39 -0.02 1.41 16 23 H 0.05 1.83 5.62 -2.39 -0.01 1.82 16 24 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 25 H 0.05 1.68 8.10 -2.39 -0.02 1.66 16 26 H 0.08 2.10 6.88 -2.38 -0.02 2.08 16 27 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.18 4.31 8.06 -2.91 -0.02 4.28 16 30 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -64.62 250.23 4.44 -60.18 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: 1.09 Total: 6.69 kcal Atomic # 6 Polarization: -57.22 SS G_CDS: 2.49 Total: -54.73 kcal Atomic # 7 Polarization: -58.76 SS G_CDS: 0.30 Total: -58.46 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 1.85 Total: 45.82 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -1.29 Total: 0.49 kcal Total: -64.62 4.44 -60.18 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260993306.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.265 kcal (2) G-P(sol) polarization free energy of solvation -64.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds