Wall clock time and date at job start Thu Apr 9 2020 14:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50693 * 109.47220 * 2 1 4 4 C 1.38106 * 120.04144 * 265.00365 * 3 2 1 5 5 C 1.38283 * 120.08100 * 180.25295 * 4 3 2 6 6 C 1.38326 * 120.15608 * 359.44558 * 5 4 3 7 7 C 1.50706 * 119.95540 * 180.25425 * 6 5 4 8 8 C 1.50699 * 109.46968 * 270.29213 * 7 6 5 9 9 H 1.08000 * 120.00265 * 0.02562 * 8 7 6 10 10 C 1.37885 * 120.00055 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99506 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 120.00135 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47325 * 89.99982 * 12 10 8 14 14 H 1.48502 * 109.46941 * 210.00276 * 12 10 8 15 15 H 1.48505 * 109.47145 * 330.00082 * 12 10 8 16 16 C 1.38057 * 120.08226 * 0.55330 * 6 5 4 17 17 C 1.38956 * 120.03840 * 84.97625 * 3 2 1 18 18 S 1.76195 * 120.08370 * 0.02562 * 17 3 2 19 19 H 1.09006 * 109.47086 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47219 * 299.99753 * 1 2 3 21 21 H 1.08998 * 109.47159 * 59.99981 * 1 2 3 22 22 H 1.09006 * 109.46832 * 239.99731 * 2 1 3 23 23 H 1.09005 * 109.46847 * 120.00272 * 2 1 3 24 24 H 1.08002 * 119.95672 * 359.97129 * 4 3 2 25 25 H 1.07998 * 119.92003 * 179.71665 * 5 4 3 26 26 H 1.08995 * 109.47269 * 30.29446 * 7 6 5 27 27 H 1.08999 * 109.46948 * 150.30040 * 7 6 5 28 28 H 0.97001 * 119.99806 * 180.02562 * 11 10 8 29 29 H 1.08009 * 120.03954 * 179.74429 * 16 6 5 30 30 H 1.34500 * 102.99980 * 89.99611 * 18 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3610 2.0379 -1.1910 5 6 2.8270 3.3398 -1.1915 6 6 2.9549 4.0326 -0.0010 7 6 3.4578 5.4532 -0.0074 8 6 4.9598 5.4549 0.1144 9 1 5.4967 4.5207 0.1886 10 6 5.6489 6.6491 0.1302 11 7 4.9952 7.7867 0.0394 12 14 7.5108 6.6512 0.2805 13 1 8.1169 6.6051 -1.0745 14 1 7.9497 7.8869 0.9774 15 1 7.9460 5.4632 1.0580 16 6 2.6282 3.4221 1.1934 17 6 2.1649 2.1117 1.1983 18 16 1.7468 1.3285 2.7203 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8900 24 1 2.2582 1.5014 -2.1227 25 1 3.0876 3.8184 -2.1239 26 1 3.1683 5.9370 -0.9402 27 1 3.0246 5.9957 0.8329 28 1 5.4799 8.6268 0.0501 29 1 2.7323 3.9623 2.1229 30 1 2.9060 0.7592 3.0960 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306554829.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:16 Heat of formation + Delta-G solvation = -12.881039 kcal Electronic energy + Delta-G solvation = -12524.105271 eV Core-core repulsion = 10408.946145 eV Total energy + Delta-G solvation = -2115.159126 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 222.077 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.35758 -36.13707 -34.61389 -31.91183 -31.81600 -28.57131 -25.59156 -23.89161 -23.40408 -21.60812 -18.61074 -18.45756 -17.09348 -16.69425 -16.45234 -15.87457 -14.91106 -14.55721 -14.53316 -14.37282 -13.74174 -13.57793 -13.32561 -12.83663 -12.62951 -12.58198 -12.38890 -12.05179 -11.75672 -11.61402 -11.51427 -11.31213 -10.63752 -9.80195 -9.35144 -9.02657 -8.23539 -6.37200 0.04131 0.51186 0.76796 1.37226 1.38015 1.49176 1.84268 2.36317 2.83993 3.07378 3.87052 3.95672 4.21765 4.35646 4.53121 4.60780 4.63882 4.69880 4.87616 5.11974 5.17980 5.20860 5.26659 5.32411 5.44659 5.51699 5.62403 5.70492 5.94325 6.01484 6.16226 6.75060 7.31559 8.85817 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.040992 B = 0.006692 C = 0.006323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 682.897404 B = 4183.344119 C = 4427.093294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.080 4.080 3 C -0.057 4.057 4 C -0.119 4.119 5 C -0.102 4.102 6 C -0.075 4.075 7 C 0.058 3.942 8 C -0.531 4.531 9 H 0.052 0.948 10 C 0.007 3.993 11 N -0.928 5.928 12 Si 0.964 3.036 13 H -0.269 1.269 14 H -0.279 1.279 15 H -0.269 1.269 16 C -0.088 4.088 17 C -0.120 4.120 18 S -0.120 6.120 19 H 0.077 0.923 20 H 0.050 0.950 21 H 0.052 0.948 22 H 0.087 0.913 23 H 0.078 0.922 24 H 0.156 0.844 25 H 0.125 0.875 26 H 0.009 0.991 27 H 0.003 0.997 28 H 0.266 0.734 29 H 0.116 0.884 30 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.429 -15.156 -0.319 16.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.118 4.118 3 C -0.060 4.060 4 C -0.138 4.138 5 C -0.120 4.120 6 C -0.077 4.077 7 C 0.021 3.979 8 C -0.569 4.569 9 H 0.070 0.930 10 C -0.192 4.192 11 N -0.568 5.568 12 Si 0.789 3.211 13 H -0.194 1.194 14 H -0.204 1.204 15 H -0.194 1.194 16 C -0.109 4.109 17 C -0.231 4.231 18 S 0.038 5.962 19 H 0.096 0.904 20 H 0.069 0.931 21 H 0.071 0.929 22 H 0.106 0.894 23 H 0.096 0.904 24 H 0.174 0.826 25 H 0.143 0.857 26 H 0.027 0.973 27 H 0.021 0.979 28 H 0.075 0.925 29 H 0.134 0.866 30 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -6.848 -15.310 0.478 16.779 hybrid contribution 2.218 0.957 -0.454 2.458 sum -4.630 -14.353 0.023 15.081 Atomic orbital electron populations 1.21685 0.93403 1.02665 1.01816 1.20654 0.97399 0.90070 1.03647 1.20436 0.96701 0.97446 0.91444 1.21282 0.99805 0.94242 0.98470 1.21384 0.97719 0.95189 0.97678 1.20394 0.96193 0.97613 0.93526 1.18092 0.95174 0.88520 0.96144 1.21352 0.92181 0.92498 1.50855 0.92982 1.25904 1.03692 0.95036 0.94549 1.70074 1.37722 0.98068 1.50915 0.85459 0.79239 0.77763 0.78679 1.19434 1.20383 1.19355 1.21409 0.97288 0.94201 0.97960 1.21163 1.09465 0.96588 0.95927 1.85485 1.18212 1.68162 1.24359 0.90442 0.93081 0.92856 0.89431 0.90395 0.82606 0.85695 0.97288 0.97891 0.92461 0.86636 0.96068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.89 71.98 0.71 -1.91 16 2 C -0.08 -1.71 5.53 29.85 0.16 -1.54 16 3 C -0.06 -1.68 5.15 -19.73 -0.10 -1.78 16 4 C -0.12 -3.54 9.67 22.25 0.22 -3.32 16 5 C -0.10 -3.81 9.70 22.30 0.22 -3.59 16 6 C -0.08 -3.34 5.07 -19.88 -0.10 -3.44 16 7 C 0.06 3.10 5.10 29.10 0.15 3.25 16 8 C -0.53 -30.38 9.09 25.60 0.23 -30.14 16 9 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 10 C 0.01 0.38 5.46 84.66 0.46 0.85 16 11 N -0.93 -55.83 13.29 21.45 0.28 -55.55 16 12 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 13 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 14 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 15 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 16 C -0.09 -3.57 9.44 22.41 0.21 -3.36 16 17 C -0.12 -4.04 6.11 22.62 0.14 -3.91 16 18 S -0.12 -3.37 23.68 -56.49 -1.34 -4.71 16 19 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 20 H 0.05 1.10 7.73 -2.39 -0.02 1.08 16 21 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 22 H 0.09 1.51 8.05 -2.38 -0.02 1.49 16 23 H 0.08 1.63 7.02 -2.38 -0.02 1.62 16 24 H 0.16 3.45 8.06 -2.91 -0.02 3.43 16 25 H 0.13 4.52 8.06 -2.91 -0.02 4.49 16 26 H 0.01 0.50 8.09 -2.39 -0.02 0.48 16 27 H 0.00 0.16 8.08 -2.39 -0.02 0.14 16 28 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 29 H 0.12 4.82 8.06 -2.91 -0.02 4.80 16 30 H 0.08 2.00 9.07 73.35 0.67 2.67 16 Total: -1.00 -62.68 272.60 5.06 -57.62 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: 1.79 Total: 5.28 kcal Atomic # 6 Polarization: -51.20 SS G_CDS: 2.30 Total: -48.90 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.28 Total: -55.55 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: -3.37 SS G_CDS: -1.34 Total: -4.71 kcal Total: -62.68 5.06 -57.62 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306554829.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.735 kcal (2) G-P(sol) polarization free energy of solvation -62.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds