Wall clock time and date at job start Thu Apr 9 2020 14:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46958 * 2 1 4 4 C 1.50698 * 109.47120 * 240.00307 * 2 1 3 5 5 H 1.07998 * 119.99900 * 275.04875 * 4 2 1 6 6 C 1.37871 * 120.00321 * 95.05489 * 4 2 1 7 7 N 1.31521 * 120.00510 * 183.69278 * 6 4 2 8 8 Si 1.86802 * 120.00156 * 3.68670 * 6 4 2 9 9 H 1.48500 * 109.46897 * 84.82817 * 8 6 4 10 10 H 1.48494 * 109.47587 * 204.83345 * 8 6 4 11 11 H 1.48501 * 109.47153 * 324.83400 * 8 6 4 12 12 C 1.53001 * 109.47506 * 119.99727 * 2 1 3 13 13 H 1.08993 * 109.47066 * 179.97438 * 12 2 1 14 14 O 1.42908 * 109.46761 * 60.00278 * 12 2 1 15 15 C 1.50700 * 109.47225 * 300.00752 * 12 2 1 16 16 C 1.38260 * 119.94845 * 84.72231 * 15 12 2 17 17 C 1.38144 * 120.05621 * 179.72642 * 16 15 12 18 18 C 1.38726 * 119.94160 * 0.54662 * 17 16 15 19 19 O 1.35902 * 120.05594 * 179.74480 * 18 17 16 20 20 C 1.38731 * 119.89161 * 359.72801 * 18 17 16 21 21 C 1.38142 * 119.94166 * 359.97438 * 20 18 17 22 22 H 1.09001 * 109.46919 * 305.91788 * 1 2 3 23 23 H 1.09002 * 109.47175 * 65.92461 * 1 2 3 24 24 H 1.09002 * 109.46664 * 185.92038 * 1 2 3 25 25 H 0.96993 * 120.00243 * 180.02562 * 7 6 4 26 26 H 0.96700 * 113.99880 * 299.99962 * 14 12 2 27 27 H 1.08002 * 119.97124 * 0.02562 * 16 15 12 28 28 H 1.08003 * 120.02792 * 180.26899 * 17 16 15 29 29 H 0.96698 * 114.00639 * 269.97699 * 19 18 17 30 30 H 1.08002 * 120.02699 * 179.97438 * 20 18 17 31 31 H 1.08001 * 119.97152 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.1347 -1.7854 -1.2293 6 6 2.3613 0.0122 -2.3576 7 7 2.7302 -0.6122 -3.4548 8 14 2.2829 1.8784 -2.3267 9 1 3.5533 2.4181 -1.7790 10 1 2.0826 2.3884 -3.7069 11 1 1.1505 2.3121 -1.4696 12 6 2.0401 -0.7212 1.2493 13 1 3.1300 -0.7215 1.2489 14 8 1.5638 -2.0685 1.2492 15 6 1.5377 -0.0109 2.4797 16 6 0.2817 -0.3009 2.9797 17 6 -0.1789 0.3448 4.1108 18 6 0.6155 1.2932 4.7385 19 8 0.1627 1.9335 5.8483 20 6 1.8731 1.5866 4.2316 21 6 2.3315 0.9336 3.1038 22 1 -0.3633 0.6029 0.8323 23 1 -0.3633 0.4192 -0.9383 24 1 -0.3633 -1.0222 0.1060 25 1 2.9620 -0.1038 -4.2476 26 1 0.5998 -2.1449 1.2493 27 1 -0.3380 -1.0365 2.4883 28 1 -1.1583 0.1147 4.5034 29 1 -0.3203 2.7502 5.6617 30 1 2.4932 2.3249 4.7183 31 1 3.3107 1.1614 2.7090 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049806656.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:07 Heat of formation + Delta-G solvation = -77.110730 kcal Electronic energy + Delta-G solvation = -15095.224294 eV Core-core repulsion = 12534.527089 eV Total energy + Delta-G solvation = -2560.697205 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.83175 -37.83494 -35.76402 -33.25331 -31.34941 -30.89011 -29.52050 -25.79487 -24.70649 -22.55934 -21.52363 -19.40430 -18.37578 -17.23821 -16.48429 -15.69818 -15.28931 -14.97855 -14.25448 -13.99972 -13.61526 -13.27167 -12.75240 -12.47988 -12.30559 -11.85996 -11.71777 -11.46256 -11.10619 -10.74768 -10.50894 -10.33880 -10.14312 -9.79162 -9.16421 -9.02880 -8.77995 -8.58656 -8.16376 -6.07746 -4.06618 1.38522 1.50149 3.24898 3.34340 3.35097 3.76226 4.28655 4.39617 4.99791 5.06898 5.10643 5.22514 5.28846 5.54230 5.69439 5.92627 6.02571 6.08768 6.24400 6.27255 6.45390 6.52497 6.60250 6.67668 6.91606 6.94787 7.04568 7.36005 7.66305 7.71949 8.33515 8.53506 9.04381 9.54465 11.05530 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.038981 B = 0.008109 C = 0.007437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.119592 B = 3452.038436 C = 3763.977331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.013 4.013 3 H 0.038 0.962 4 C -0.505 4.505 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.900 5.900 8 Si 0.872 3.128 9 H -0.276 1.276 10 H -0.290 1.290 11 H -0.266 1.266 12 C 0.154 3.846 13 H 0.102 0.898 14 O -0.549 6.549 15 C -0.102 4.102 16 C -0.096 4.096 17 C -0.144 4.144 18 C 0.085 3.915 19 O -0.503 6.503 20 C -0.144 4.144 21 C -0.102 4.102 22 H 0.027 0.973 23 H 0.049 0.951 24 H 0.043 0.957 25 H 0.263 0.737 26 H 0.362 0.638 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.385 0.615 30 H 0.124 0.876 31 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.160 5.471 13.521 15.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 H 0.056 0.944 4 C -0.543 4.543 5 H 0.100 0.900 6 C -0.131 4.131 7 N -0.538 5.538 8 Si 0.700 3.300 9 H -0.202 1.202 10 H -0.216 1.216 11 H -0.191 1.191 12 C 0.095 3.905 13 H 0.120 0.880 14 O -0.354 6.354 15 C -0.102 4.102 16 C -0.114 4.114 17 C -0.163 4.163 18 C 0.041 3.959 19 O -0.312 6.312 20 C -0.162 4.162 21 C -0.120 4.120 22 H 0.046 0.954 23 H 0.068 0.932 24 H 0.062 0.938 25 H 0.073 0.927 26 H 0.210 0.790 27 H 0.143 0.857 28 H 0.142 0.858 29 H 0.240 0.760 30 H 0.142 0.858 31 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.190 4.892 13.610 15.057 hybrid contribution -0.851 1.711 -0.357 1.945 sum -5.042 6.604 13.253 15.642 Atomic orbital electron populations 1.22099 0.99009 0.99474 0.99672 1.19739 0.92897 0.96451 0.94118 0.94402 1.20944 1.42922 0.95990 0.94403 0.89959 1.25065 0.94736 0.97933 0.95412 1.69899 1.46121 1.35669 1.02073 0.86939 0.79026 0.86911 0.77139 1.20203 1.21584 1.19085 1.21085 0.98578 0.81219 0.89633 0.88039 1.86584 1.25814 1.26130 1.96860 1.21149 0.94410 0.96945 0.97713 1.20831 0.95597 0.99616 0.95368 1.21321 1.00145 0.98681 0.96106 1.18412 0.93276 0.96148 0.88069 1.84814 1.75683 1.41456 1.29285 1.21341 0.96401 1.01573 0.96904 1.20930 1.00077 0.96153 0.94817 0.95368 0.93218 0.93835 0.92683 0.79041 0.85715 0.85816 0.76032 0.85801 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 7.90 37.16 0.29 -2.59 16 2 C -0.01 -0.29 1.83 -91.77 -0.17 -0.45 16 3 H 0.04 0.86 5.34 -51.93 -0.28 0.58 16 4 C -0.50 -13.78 8.64 -34.44 -0.30 -14.08 16 5 H 0.08 2.50 7.74 -52.49 -0.41 2.09 16 6 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.26 13.96 55.43 0.77 -26.48 16 8 Si 0.87 21.11 26.96 -169.99 -4.58 16.52 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 10 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 11 H -0.27 -6.16 6.87 56.52 0.39 -5.77 16 12 C 0.15 3.02 3.05 -27.88 -0.09 2.94 16 13 H 0.10 2.06 8.05 -51.93 -0.42 1.64 16 14 O -0.55 -10.89 12.50 -35.23 -0.44 -11.33 16 15 C -0.10 -1.70 4.62 -104.60 -0.48 -2.19 16 16 C -0.10 -1.43 7.35 -39.61 -0.29 -1.73 16 17 C -0.14 -1.96 9.99 -39.44 -0.39 -2.36 16 18 C 0.08 1.16 6.70 -39.22 -0.26 0.90 16 19 O -0.50 -5.91 13.50 -19.43 -0.26 -6.18 16 20 C -0.14 -1.99 9.99 -39.43 -0.39 -2.38 16 21 C -0.10 -1.56 9.67 -39.61 -0.38 -1.94 16 22 H 0.03 0.49 6.35 -51.93 -0.33 0.16 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.04 0.79 6.47 -51.93 -0.34 0.45 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.36 6.05 5.55 45.56 0.25 6.30 16 27 H 0.13 1.68 6.21 -52.49 -0.33 1.35 16 28 H 0.12 1.42 8.06 -52.48 -0.42 1.00 16 29 H 0.38 2.65 9.06 45.56 0.41 3.06 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 258.62 15.07 3.90 3.90 Total: -1.00 -31.83 258.62 -5.44 -37.27 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -2.27 Total: 8.29 kcal Atomic # 6 Polarization: -19.43 SS G_CDS: -2.56 Total: -22.00 kcal Atomic # 7 Polarization: -27.26 SS G_CDS: 0.77 Total: -26.48 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -0.70 Total: -17.50 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.58 Total: 16.52 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.83 -5.44 -37.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806656.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.839 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds