Wall clock time and date at job start Thu Apr 9 2020 14:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47485 * 2 1 4 4 C 1.50695 * 109.47382 * 120.00493 * 2 1 3 5 5 H 1.07999 * 120.00693 * 119.99801 * 4 2 1 6 6 C 1.37888 * 119.99822 * 300.00181 * 4 2 1 7 7 N 1.31510 * 119.99910 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99772 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47357 * 90.00121 * 8 6 4 10 10 H 1.48501 * 109.47145 * 210.00365 * 8 6 4 11 11 H 1.48503 * 109.47093 * 330.00089 * 8 6 4 12 12 C 1.53000 * 109.47326 * 240.00415 * 2 1 3 13 13 H 1.08993 * 109.47594 * 185.00288 * 12 2 1 14 14 O 1.42908 * 109.46988 * 305.00226 * 12 2 1 15 15 C 1.50700 * 109.47435 * 64.99869 * 12 2 1 16 16 C 1.38268 * 119.94274 * 279.72999 * 15 12 2 17 17 C 1.38149 * 120.05738 * 180.27561 * 16 15 12 18 18 C 1.38729 * 119.94092 * 359.97438 * 17 16 15 19 19 O 1.35900 * 120.05757 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.89071 * 359.97438 * 18 17 16 21 21 C 1.38142 * 119.94357 * 0.02562 * 20 18 17 22 22 H 1.08995 * 109.46839 * 300.00023 * 1 2 3 23 23 H 1.08996 * 109.46826 * 59.99657 * 1 2 3 24 24 H 1.08998 * 109.46979 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99528 * 179.97438 * 7 6 4 26 26 H 0.96698 * 114.00008 * 59.99678 * 14 12 2 27 27 H 1.08005 * 119.97190 * 0.27376 * 16 15 12 28 28 H 1.07998 * 120.03168 * 180.02562 * 17 16 15 29 29 H 0.96695 * 113.99980 * 269.97704 * 19 18 17 30 30 H 1.08001 * 120.03050 * 179.97438 * 20 18 17 31 31 H 1.07997 * 119.97374 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8743 2.6993 10 1 0.9772 1.9952 3.9071 11 1 0.8491 2.1772 1.4923 12 6 2.0401 -0.7211 -1.2493 13 1 3.1263 -0.7994 -1.2056 14 8 1.4702 -2.0303 -1.3096 15 6 1.6414 0.0572 -2.4766 16 6 0.3593 -0.0588 -2.9811 17 6 -0.0070 0.6492 -4.1094 18 6 0.9128 1.4775 -4.7360 19 8 0.5548 2.1755 -5.8458 20 6 2.1983 1.5929 -4.2272 21 6 2.5596 0.8828 -3.0987 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9032 -0.5282 4.4375 26 1 0.5041 -2.0372 -1.3505 27 1 -0.3565 -0.7035 -2.4927 28 1 -1.0086 0.5586 -4.5029 29 1 0.7124 1.7036 -6.6750 30 1 2.9162 2.2368 -4.7135 31 1 3.5600 0.9727 -2.7020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049806657.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:09 Heat of formation + Delta-G solvation = -68.541403 kcal Electronic energy + Delta-G solvation = -15114.599243 eV Core-core repulsion = 12554.273631 eV Total energy + Delta-G solvation = -2560.325611 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.85615 -37.87379 -35.80308 -33.36089 -31.31104 -30.93335 -29.57889 -25.90361 -24.63230 -22.57283 -21.61951 -19.56261 -18.40047 -17.08133 -16.40892 -15.76315 -15.38356 -15.00496 -14.35054 -14.06444 -13.63187 -13.32613 -12.94285 -12.61461 -12.13891 -11.96841 -11.83057 -11.48574 -11.07689 -10.68480 -10.44886 -10.33012 -10.10369 -9.67691 -9.07764 -9.04817 -8.77724 -8.57161 -8.20969 -6.06467 -4.05368 1.36506 1.48254 3.25561 3.37182 3.38888 3.74717 4.25356 4.40259 4.98198 5.05873 5.11363 5.18588 5.30135 5.51791 5.66154 5.90666 5.97012 6.01332 6.19516 6.25912 6.42892 6.50546 6.56882 6.60178 6.86805 6.91398 7.02812 7.34854 7.64841 7.72057 8.31809 8.52199 9.01305 9.55108 11.06736 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.041608 B = 0.007857 C = 0.007420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.788406 B = 3562.916863 C = 3772.509380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.014 4.014 3 H 0.035 0.965 4 C -0.505 4.505 5 H 0.079 0.921 6 C 0.069 3.931 7 N -0.900 5.900 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.298 1.298 11 H -0.268 1.268 12 C 0.160 3.840 13 H 0.102 0.898 14 O -0.549 6.549 15 C -0.103 4.103 16 C -0.097 4.097 17 C -0.145 4.145 18 C 0.087 3.913 19 O -0.502 6.502 20 C -0.144 4.144 21 C -0.098 4.098 22 H 0.043 0.957 23 H 0.036 0.964 24 H 0.053 0.947 25 H 0.263 0.737 26 H 0.363 0.637 27 H 0.126 0.874 28 H 0.124 0.876 29 H 0.384 0.616 30 H 0.125 0.875 31 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.116 3.504 -15.757 16.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.033 4.033 3 H 0.053 0.947 4 C -0.543 4.543 5 H 0.097 0.903 6 C -0.132 4.132 7 N -0.538 5.538 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.225 1.225 11 H -0.193 1.193 12 C 0.101 3.899 13 H 0.120 0.880 14 O -0.354 6.354 15 C -0.104 4.104 16 C -0.116 4.116 17 C -0.163 4.163 18 C 0.043 3.957 19 O -0.311 6.311 20 C -0.163 4.163 21 C -0.116 4.116 22 H 0.062 0.938 23 H 0.055 0.945 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.210 0.790 27 H 0.144 0.856 28 H 0.142 0.858 29 H 0.239 0.761 30 H 0.143 0.857 31 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.642 3.757 -15.123 15.805 hybrid contribution -1.156 0.798 -0.092 1.408 sum -3.798 4.555 -15.215 16.330 Atomic orbital electron populations 1.22344 0.99511 1.00607 0.99339 1.19756 0.92221 0.97044 0.94259 0.94708 1.20933 1.31926 1.13376 0.88074 0.90250 1.25006 0.95783 0.96531 0.95910 1.69894 1.45763 1.40283 0.97886 0.86870 0.80594 0.83958 0.76865 1.20766 1.22548 1.19272 1.20899 0.98157 0.81491 0.89397 0.88001 1.86573 1.24457 1.27686 1.96680 1.21103 0.93906 0.97732 0.97627 1.20882 0.96020 0.99263 0.95385 1.21332 0.99790 0.97496 0.97713 1.18428 0.92489 0.94657 0.90170 1.84834 1.86666 1.44417 1.15225 1.21353 0.95594 1.00941 0.98397 1.20950 0.99823 0.96106 0.94763 0.93847 0.94501 0.92785 0.92694 0.78954 0.85574 0.85785 0.76085 0.85744 0.85347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.34 7.42 37.16 0.28 -3.07 16 2 C -0.01 -0.31 1.72 -91.77 -0.16 -0.47 16 3 H 0.03 0.82 7.20 -51.93 -0.37 0.45 16 4 C -0.51 -14.00 8.91 -34.44 -0.31 -14.31 16 5 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 6 C 0.07 1.98 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.58 13.96 55.43 0.77 -26.81 16 8 Si 0.89 22.04 24.37 -169.99 -4.14 17.90 16 9 H -0.28 -6.81 6.87 56.52 0.39 -6.42 16 10 H -0.30 -7.45 7.11 56.52 0.40 -7.05 16 11 H -0.27 -6.42 6.53 56.52 0.37 -6.05 16 12 C 0.16 3.11 2.97 -27.88 -0.08 3.03 16 13 H 0.10 2.02 8.00 -51.93 -0.42 1.61 16 14 O -0.55 -10.79 12.84 -35.23 -0.45 -11.24 16 15 C -0.10 -1.71 4.82 -104.60 -0.50 -2.22 16 16 C -0.10 -1.45 7.30 -39.60 -0.29 -1.74 16 17 C -0.14 -1.97 9.99 -39.43 -0.39 -2.36 16 18 C 0.09 1.17 6.70 -39.22 -0.26 0.91 16 19 O -0.50 -5.84 13.50 -19.42 -0.26 -6.10 16 20 C -0.14 -1.96 9.99 -39.43 -0.39 -2.36 16 21 C -0.10 -1.48 9.66 -39.61 -0.38 -1.86 16 22 H 0.04 0.97 3.27 -51.93 -0.17 0.80 16 23 H 0.04 0.66 5.59 -51.93 -0.29 0.37 16 24 H 0.05 1.05 6.71 -51.93 -0.35 0.70 16 25 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 26 H 0.36 6.03 5.65 45.56 0.26 6.29 16 27 H 0.13 1.71 5.87 -52.48 -0.31 1.40 16 28 H 0.12 1.43 8.06 -52.49 -0.42 1.00 16 29 H 0.38 2.49 9.06 45.56 0.41 2.90 16 30 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 31 H 0.13 1.74 8.04 -52.49 -0.42 1.32 16 LS Contribution 251.91 15.07 3.80 3.80 Total: -1.00 -32.45 251.91 -4.99 -37.44 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -2.10 Total: 7.58 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: -2.60 Total: -22.57 kcal Atomic # 7 Polarization: -27.58 SS G_CDS: 0.77 Total: -26.81 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.71 Total: -17.34 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.14 Total: 17.90 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -32.45 -4.99 -37.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806657.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.103 kcal (2) G-P(sol) polarization free energy of solvation -32.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds