Wall clock time and date at job start Thu Apr 9 2020 14:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47485 * 2 1 4 4 C 1.50695 * 109.47382 * 120.00493 * 2 1 3 5 5 H 1.07999 * 120.00693 * 119.99801 * 4 2 1 6 6 C 1.37888 * 119.99822 * 300.00181 * 4 2 1 7 7 N 1.31510 * 119.99910 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 119.99772 * 359.97438 * 6 4 2 9 9 H 1.48500 * 109.47357 * 90.00121 * 8 6 4 10 10 H 1.48501 * 109.47145 * 210.00365 * 8 6 4 11 11 H 1.48503 * 109.47093 * 330.00089 * 8 6 4 12 12 C 1.53000 * 109.47326 * 240.00415 * 2 1 3 13 13 H 1.08993 * 109.47594 * 185.00288 * 12 2 1 14 14 O 1.42908 * 109.46988 * 305.00226 * 12 2 1 15 15 C 1.50700 * 109.47435 * 64.99869 * 12 2 1 16 16 C 1.38268 * 119.94274 * 279.72999 * 15 12 2 17 17 C 1.38149 * 120.05738 * 180.27561 * 16 15 12 18 18 C 1.38729 * 119.94092 * 359.97438 * 17 16 15 19 19 O 1.35900 * 120.05757 * 180.02562 * 18 17 16 20 20 C 1.38737 * 119.89071 * 359.97438 * 18 17 16 21 21 C 1.38142 * 119.94357 * 0.02562 * 20 18 17 22 22 H 1.08995 * 109.46839 * 300.00023 * 1 2 3 23 23 H 1.08996 * 109.46826 * 59.99657 * 1 2 3 24 24 H 1.08998 * 109.46979 * 179.97438 * 1 2 3 25 25 H 0.97000 * 119.99528 * 179.97438 * 7 6 4 26 26 H 0.96698 * 114.00008 * 59.99678 * 14 12 2 27 27 H 1.08005 * 119.97190 * 0.27376 * 16 15 12 28 28 H 1.07998 * 120.03168 * 180.02562 * 17 16 15 29 29 H 0.96695 * 113.99980 * 269.97704 * 19 18 17 30 30 H 1.08001 * 120.03050 * 179.97438 * 20 18 17 31 31 H 1.07997 * 119.97374 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1373 -0.8598 3.5565 8 14 0.6259 1.2796 2.6542 9 1 -0.8020 0.8743 2.6993 10 1 0.9772 1.9952 3.9071 11 1 0.8491 2.1772 1.4923 12 6 2.0401 -0.7211 -1.2493 13 1 3.1263 -0.7994 -1.2056 14 8 1.4702 -2.0303 -1.3096 15 6 1.6414 0.0572 -2.4766 16 6 0.3593 -0.0588 -2.9811 17 6 -0.0070 0.6492 -4.1094 18 6 0.9128 1.4775 -4.7360 19 8 0.5548 2.1755 -5.8458 20 6 2.1983 1.5929 -4.2272 21 6 2.5596 0.8828 -3.0987 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 1.9032 -0.5282 4.4375 26 1 0.5041 -2.0372 -1.3505 27 1 -0.3565 -0.7035 -2.4927 28 1 -1.0086 0.5586 -4.5029 29 1 0.7124 1.7036 -6.6750 30 1 2.9162 2.2368 -4.7135 31 1 3.5600 0.9727 -2.7020 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049806657.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:09 Heat of formation + Delta-G solvation = -94.169863 kcal Electronic energy + Delta-G solvation = -15115.710576 eV Core-core repulsion = 12554.273631 eV Total energy + Delta-G solvation = -2561.436945 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.01189 -39.14596 -36.99027 -35.29444 -33.20539 -32.00548 -30.87846 -27.53288 -26.43636 -23.65774 -22.93054 -21.21762 -19.36842 -18.89834 -18.09084 -17.06059 -16.69732 -16.21472 -16.06947 -15.50712 -15.05513 -14.62009 -14.41176 -14.24128 -13.64521 -13.52609 -12.98110 -12.87985 -12.74479 -12.54152 -12.04749 -11.92204 -11.54544 -11.32618 -11.05689 -10.75669 -10.60324 -9.89087 -9.38122 -8.28211 -6.31271 0.27529 0.41845 1.28995 1.35281 1.45319 2.31922 2.67914 3.06592 3.32596 3.75027 3.83717 3.93499 4.08534 4.29918 4.39212 4.47947 4.59661 4.68025 4.88755 4.92465 5.00824 5.10426 5.20572 5.36493 5.46168 5.53668 5.66919 5.75828 5.90596 6.31977 6.76211 6.89506 6.91967 7.32859 8.88985 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.041608 B = 0.007857 C = 0.007420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.788406 B = 3562.916863 C = 3772.509380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.015 4.015 3 H 0.030 0.970 4 C -0.506 4.506 5 H 0.033 0.967 6 C 0.010 3.990 7 N -0.951 5.951 8 Si 0.952 3.048 9 H -0.266 1.266 10 H -0.301 1.301 11 H -0.250 1.250 12 C 0.168 3.832 13 H 0.085 0.915 14 O -0.564 6.564 15 C -0.125 4.125 16 C -0.102 4.102 17 C -0.146 4.146 18 C 0.095 3.905 19 O -0.507 6.507 20 C -0.147 4.147 21 C -0.107 4.107 22 H 0.030 0.970 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.264 0.736 26 H 0.376 0.624 27 H 0.138 0.862 28 H 0.148 0.852 29 H 0.409 0.591 30 H 0.146 0.854 31 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.853 5.192 -18.122 19.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.034 4.034 3 H 0.048 0.952 4 C -0.544 4.544 5 H 0.051 0.949 6 C -0.187 4.187 7 N -0.592 5.592 8 Si 0.779 3.221 9 H -0.193 1.193 10 H -0.229 1.229 11 H -0.175 1.175 12 C 0.109 3.891 13 H 0.103 0.897 14 O -0.371 6.371 15 C -0.125 4.125 16 C -0.120 4.120 17 C -0.165 4.165 18 C 0.051 3.949 19 O -0.321 6.321 20 C -0.165 4.165 21 C -0.125 4.125 22 H 0.048 0.952 23 H 0.088 0.912 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.225 0.775 27 H 0.155 0.845 28 H 0.166 0.834 29 H 0.268 0.732 30 H 0.163 0.837 31 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -4.388 5.437 -17.539 18.879 hybrid contribution -0.549 0.219 0.508 0.779 sum -4.937 5.656 -17.030 18.612 Atomic orbital electron populations 1.22246 0.97364 1.01551 1.00182 1.19695 0.93925 0.96213 0.93524 0.95240 1.21209 1.30728 1.11991 0.90478 0.94883 1.25872 0.97435 0.99899 0.95482 1.70056 1.47998 1.42586 0.98568 0.85806 0.79164 0.80084 0.77036 1.19258 1.22946 1.17454 1.20579 0.97226 0.81447 0.89849 0.89722 1.86539 1.25742 1.28099 1.96731 1.20770 0.95393 0.99014 0.97332 1.21022 0.95428 0.99583 0.95939 1.21572 1.00942 0.96915 0.97032 1.18554 0.92212 0.93646 0.90534 1.84771 1.86535 1.44798 1.15949 1.21563 0.96377 1.00833 0.97773 1.21089 0.99976 0.96109 0.95341 0.95171 0.91236 0.91966 0.92668 0.77477 0.84466 0.83437 0.73171 0.83672 0.84932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.15 7.42 71.98 0.53 -5.61 16 2 C -0.01 -0.65 1.72 -11.54 -0.02 -0.67 16 3 H 0.03 1.36 7.20 -2.39 -0.02 1.35 16 4 C -0.51 -28.85 8.91 25.60 0.23 -28.62 16 5 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 6 C 0.01 0.56 5.45 84.66 0.46 1.02 16 7 N -0.95 -60.22 13.96 21.45 0.30 -59.93 16 8 Si 0.95 45.37 24.37 68.60 1.67 47.05 16 9 H -0.27 -12.03 6.87 99.48 0.68 -11.35 16 10 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 11 H -0.25 -11.14 6.53 99.48 0.65 -10.49 16 12 C 0.17 6.54 2.97 29.85 0.09 6.63 16 13 H 0.08 3.49 8.00 -2.39 -0.02 3.47 16 14 O -0.56 -22.14 12.84 -148.98 -1.91 -24.05 16 15 C -0.12 -3.93 4.82 -19.85 -0.10 -4.03 16 16 C -0.10 -2.74 7.30 22.26 0.16 -2.58 16 17 C -0.15 -3.41 9.99 22.37 0.22 -3.19 16 18 C 0.09 2.20 6.70 22.51 0.15 2.35 16 19 O -0.51 -9.63 13.50 -92.42 -1.25 -10.88 16 20 C -0.15 -3.55 9.99 22.37 0.22 -3.32 16 21 C -0.11 -3.03 9.66 22.25 0.21 -2.81 16 22 H 0.03 1.26 3.27 -2.39 -0.01 1.25 16 23 H 0.07 2.27 5.59 -2.39 -0.01 2.26 16 24 H 0.06 2.30 6.71 -2.39 -0.02 2.28 16 25 H 0.26 15.70 8.31 -92.71 -0.77 14.92 16 26 H 0.38 12.09 5.65 -74.06 -0.42 11.67 16 27 H 0.14 3.28 5.87 -2.91 -0.02 3.26 16 28 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 29 H 0.41 3.49 9.06 -74.06 -0.67 2.82 16 30 H 0.15 2.82 8.06 -2.91 -0.02 2.80 16 31 H 0.13 3.49 8.04 -2.91 -0.02 3.47 16 Total: -1.00 -70.83 251.91 0.98 -69.85 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.00 Total: 18.79 kcal Atomic # 6 Polarization: -43.00 SS G_CDS: 2.17 Total: -40.83 kcal Atomic # 7 Polarization: -60.22 SS G_CDS: 0.30 Total: -59.93 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -3.16 Total: -34.93 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.67 Total: 47.05 kcal Total: -70.83 0.98 -69.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049806657.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.322 kcal (2) G-P(sol) polarization free energy of solvation -70.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds