Wall clock time and date at job start Thu Apr 9 2020 14:15:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50700 * 109.47248 * 2 1 4 4 O 1.21274 * 119.99568 * 0.02562 * 3 2 1 5 5 C 1.47047 * 120.00174 * 180.02562 * 3 2 1 6 6 C 1.39343 * 120.07778 * 359.72485 * 5 3 2 7 7 C 1.40397 * 119.58874 * 179.72984 * 6 5 3 8 8 C 1.41387 * 120.12440 * 180.25491 * 7 6 5 9 9 H 1.08002 * 120.00062 * 204.74687 * 8 7 6 10 10 C 1.39900 * 119.99933 * 24.74392 * 8 7 6 11 11 N 1.30858 * 120.00242 * 17.77954 * 10 8 7 12 12 Si 1.86797 * 119.99884 * 197.78404 * 10 8 7 13 13 H 1.48504 * 109.47096 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47300 * 119.99985 * 12 10 8 15 15 H 1.48501 * 109.47372 * 240.00232 * 12 10 8 16 16 C 1.40911 * 119.75084 * 0.54042 * 7 6 5 17 17 C 1.37541 * 120.15229 * 359.73332 * 16 7 6 18 18 C 1.38725 * 120.41920 * 359.97438 * 17 16 7 19 19 F 1.35099 * 119.87914 * 179.97438 * 18 17 16 20 20 H 1.09001 * 109.46583 * 299.99540 * 1 2 3 21 21 H 1.09000 * 109.47211 * 59.99579 * 1 2 3 22 22 H 1.08998 * 109.47292 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.46583 * 240.00460 * 2 1 3 24 24 H 1.09000 * 109.47211 * 120.00421 * 2 1 3 25 25 H 1.07995 * 120.20677 * 359.97438 * 6 5 3 26 26 H 0.97002 * 120.00167 * 179.97438 * 11 10 8 27 27 H 1.07998 * 119.92303 * 179.70302 * 16 7 6 28 28 H 1.08006 * 119.78832 * 179.97438 * 17 16 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3425 0.0005 5 6 3.4781 1.6895 -0.0006 6 6 4.3850 0.6316 0.0047 7 6 5.7631 0.8999 -0.0017 8 6 6.6933 -0.1648 -0.0019 9 1 7.6899 -0.0114 0.3852 10 6 6.3229 -1.4172 -0.5034 11 7 5.2727 -1.5280 -1.2762 12 14 7.3274 -2.9312 -0.0699 13 1 8.4567 -2.5403 0.8117 14 1 6.4645 -3.9124 0.6358 15 1 7.8600 -3.5446 -1.3130 16 6 6.2157 2.2344 -0.0017 17 6 5.3113 3.2706 -0.0012 18 6 3.9481 3.0132 -0.0010 19 9 3.0694 4.0394 0.0001 20 1 -0.3632 0.5138 0.8901 21 1 -0.3633 0.5139 -0.8899 22 1 -0.3634 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 4.0301 -0.3883 0.0096 26 1 5.0161 -2.3963 -1.6243 27 1 7.2752 2.4440 -0.0018 28 1 5.6647 4.2912 -0.0008 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000306700708.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:09 Heat of formation + Delta-G solvation = -83.084255 kcal Electronic energy + Delta-G solvation = -14682.026256 eV Core-core repulsion = 11997.609714 eV Total energy + Delta-G solvation = -2684.416542 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -47.49972 -38.85559 -37.08820 -33.73972 -32.42518 -30.29436 -29.55254 -25.24020 -24.65308 -22.18310 -20.84345 -18.85468 -17.41180 -16.33533 -15.71099 -15.01389 -14.93852 -14.88699 -14.15168 -13.90773 -13.29526 -12.92111 -12.54441 -12.12394 -12.07644 -11.80834 -11.49468 -11.20887 -11.19235 -10.96043 -10.72950 -10.49761 -10.27306 -10.00929 -9.35282 -8.76329 -7.92578 -7.53992 -7.00723 -4.56541 1.73717 2.54140 2.94278 2.97182 3.02249 3.38539 3.77426 4.36448 4.75059 5.31816 5.44837 5.55112 5.63711 5.77247 5.91250 6.18185 6.20583 6.32721 6.48648 6.53253 6.67301 6.77429 6.96748 7.13735 7.40095 7.49809 7.71212 7.90746 8.26070 8.34724 8.58007 8.62521 9.95086 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.026762 B = 0.010289 C = 0.007617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.016892 B = 2720.761974 C = 3675.124325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.167 4.167 3 C 0.398 3.602 4 O -0.469 6.469 5 C -0.186 4.186 6 C -0.091 4.091 7 C 0.085 3.915 8 C -0.454 4.454 9 H 0.084 0.916 10 C 0.074 3.926 11 N -0.793 5.793 12 Si 0.911 3.089 13 H -0.259 1.259 14 H -0.270 1.270 15 H -0.273 1.273 16 C -0.176 4.176 17 C -0.133 4.133 18 C 0.013 3.987 19 F -0.153 7.153 20 H 0.055 0.945 21 H 0.056 0.944 22 H 0.055 0.945 23 H 0.101 0.899 24 H 0.094 0.906 25 H 0.139 0.861 26 H 0.284 0.716 27 H 0.107 0.893 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.472 -2.467 1.588 3.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.205 4.205 3 C 0.278 3.722 4 O -0.346 6.346 5 C -0.188 4.188 6 C -0.111 4.111 7 C 0.083 3.917 8 C -0.483 4.483 9 H 0.102 0.898 10 C -0.144 4.144 11 N -0.418 5.418 12 Si 0.736 3.264 13 H -0.183 1.183 14 H -0.195 1.195 15 H -0.198 1.198 16 C -0.196 4.196 17 C -0.152 4.152 18 C -0.007 4.007 19 F -0.132 7.132 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.074 0.926 23 H 0.119 0.881 24 H 0.112 0.888 25 H 0.156 0.844 26 H 0.095 0.905 27 H 0.125 0.875 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.050 -2.134 1.442 3.291 hybrid contribution 0.485 -0.617 0.015 0.785 sum -1.565 -2.751 1.457 3.484 Atomic orbital electron populations 1.21572 0.94621 1.00965 1.02532 1.21933 0.97014 0.96617 1.04916 1.22488 0.88429 0.90632 0.70648 1.90462 1.58709 1.47878 1.37577 1.20247 0.94446 0.93175 1.10933 1.21700 0.92394 0.97373 0.99588 1.17628 0.92360 0.91936 0.89792 1.19602 0.99561 0.93668 1.35502 0.89812 1.25941 0.95205 1.00873 0.92360 1.69779 1.23305 1.26767 1.21977 0.86195 0.80512 0.80330 0.79413 1.18270 1.19496 1.19848 1.21047 0.97696 0.92266 1.08592 1.20547 0.91209 0.98968 1.04499 1.17473 0.86534 0.83015 1.13681 1.91369 1.69067 1.57941 1.94836 0.92599 0.92495 0.92614 0.88056 0.88784 0.84378 0.90452 0.87456 0.87448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.20 37.16 0.34 -1.75 15 2 C -0.17 -2.89 5.02 -27.88 -0.14 -3.03 15 3 C 0.40 8.62 7.11 -30.74 -0.22 8.40 15 4 O -0.47 -11.11 14.95 5.56 0.08 -11.02 15 5 C -0.19 -4.39 5.87 -105.08 -0.62 -5.00 15 6 C -0.09 -2.16 8.11 -38.36 -0.31 -2.47 15 7 C 0.09 2.08 5.57 -106.88 -0.60 1.49 15 8 C -0.45 -10.86 9.04 -37.76 -0.34 -11.20 15 9 H 0.08 1.92 7.91 -52.49 -0.41 1.50 15 10 C 0.07 1.68 5.13 -17.34 -0.09 1.59 15 11 N -0.79 -18.30 10.97 55.54 0.61 -17.69 15 12 Si 0.91 16.91 29.59 -169.99 -5.03 11.88 15 13 H -0.26 -4.80 7.11 56.52 0.40 -4.40 15 14 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 15 H -0.27 -5.05 7.11 56.52 0.40 -4.65 15 16 C -0.18 -4.00 9.77 -38.82 -0.38 -4.38 15 17 C -0.13 -2.97 9.98 -39.66 -0.40 -3.37 15 18 C 0.01 0.32 7.31 -38.56 -0.28 0.04 15 19 F -0.15 -3.76 15.52 2.25 0.03 -3.73 15 20 H 0.05 0.85 8.10 -51.93 -0.42 0.42 15 21 H 0.06 0.88 8.10 -51.93 -0.42 0.46 15 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 15 23 H 0.10 1.72 8.09 -51.93 -0.42 1.30 15 24 H 0.09 1.50 8.08 -51.93 -0.42 1.08 15 25 H 0.14 3.19 5.14 -52.49 -0.27 2.92 15 26 H 0.28 5.92 8.30 -40.82 -0.34 5.58 15 27 H 0.11 2.20 8.06 -52.49 -0.42 1.78 15 28 H 0.11 2.10 8.06 -52.48 -0.42 1.67 15 LS Contribution 252.44 15.07 3.80 3.80 Total: -1.00 -26.73 252.44 -6.29 -33.02 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -2.77 Total: 3.42 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -3.03 Total: -19.68 kcal Atomic # 7 Polarization: -18.30 SS G_CDS: 0.61 Total: -17.69 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 9 Polarization: -3.76 SS G_CDS: 0.03 Total: -3.73 kcal Atomic # 14 Polarization: 16.91 SS G_CDS: -5.03 Total: 11.88 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -26.73 -6.29 -33.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306700708.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.064 kcal (2) G-P(sol) polarization free energy of solvation -26.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds