Wall clock time and date at job start Thu Apr 9 2020 14:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47367 * 2 1 4 4 O 1.21328 * 119.99990 * 359.97438 * 3 2 1 5 5 C 1.46713 * 120.00506 * 179.97438 * 3 2 1 6 6 C 1.40399 * 119.94008 * 359.71937 * 5 3 2 7 7 C 1.36122 * 120.10080 * 180.27107 * 6 5 3 8 8 C 1.41027 * 119.99557 * 0.03000 * 7 6 5 9 9 C 1.41029 * 120.05714 * 179.97438 * 8 7 6 10 10 H 1.07993 * 120.00024 * 24.70503 * 9 8 7 11 11 C 1.40309 * 119.99912 * 204.71006 * 9 8 7 12 12 N 1.30596 * 120.00198 * 17.89290 * 11 9 8 13 13 Si 1.86799 * 119.99792 * 197.89728 * 11 9 8 14 14 H 1.48501 * 109.47417 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47072 * 119.99600 * 13 11 9 16 16 H 1.48500 * 109.47342 * 239.99796 * 13 11 9 17 17 C 1.40811 * 119.88864 * 359.97430 * 8 7 6 18 18 C 1.36570 * 119.89703 * 0.02562 * 17 8 7 19 19 F 1.35099 * 119.99552 * 180.02562 * 18 17 8 20 20 H 1.09001 * 109.47018 * 300.00262 * 1 2 3 21 21 H 1.09007 * 109.46871 * 60.00021 * 1 2 3 22 22 H 1.09001 * 109.47048 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47018 * 239.99738 * 2 1 3 24 24 H 1.09003 * 109.47074 * 119.99508 * 2 1 3 25 25 H 1.07996 * 119.94876 * 0.25730 * 6 5 3 26 26 H 1.08008 * 120.00324 * 179.97438 * 7 6 5 27 27 H 0.97006 * 119.99834 * 179.97438 * 12 11 9 28 28 H 1.08004 * 120.05505 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2440 2.3430 -0.0005 5 6 3.4748 1.6889 0.0006 6 6 4.3861 0.6209 0.0071 7 6 5.7250 0.8659 0.0132 8 6 6.1987 2.1943 0.0136 9 6 7.5856 2.4497 0.0205 10 1 8.2726 1.7113 -0.3656 11 6 8.0730 3.6631 0.5292 12 7 7.3181 4.3978 1.3011 13 14 9.8016 4.2278 0.1021 14 1 10.4464 3.2233 -0.7815 15 1 9.7362 5.5351 -0.5992 16 1 10.5968 4.3735 1.3478 17 6 5.2844 3.2652 0.0072 18 6 3.9420 3.0142 0.0011 19 9 3.0631 4.0402 -0.0056 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 4.0242 -0.3966 0.0074 26 1 6.4247 0.0431 0.0186 27 1 7.6553 5.2365 1.6531 28 1 5.6442 4.2836 0.0071 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307230368.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:42 Heat of formation + Delta-G solvation = -86.618486 kcal Electronic energy + Delta-G solvation = -14511.759257 eV Core-core repulsion = 11827.189460 eV Total energy + Delta-G solvation = -2684.569798 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -47.57428 -38.62620 -37.08519 -34.03717 -32.32241 -30.23439 -29.24150 -26.56324 -23.93251 -21.94680 -20.72051 -18.78891 -17.82622 -16.19629 -15.55617 -15.08764 -14.88916 -14.83334 -14.15098 -13.88767 -13.35724 -12.89113 -12.41922 -12.26818 -11.98221 -11.80817 -11.57078 -11.32443 -11.20740 -10.96162 -10.76395 -10.55197 -10.24474 -9.97447 -9.50424 -8.59272 -7.79738 -7.59252 -7.17771 -4.81227 1.89481 2.78663 2.80253 2.87909 2.93282 3.48191 3.63115 4.32460 4.92990 5.30093 5.44670 5.51590 5.60864 5.79842 6.00251 6.09923 6.28106 6.38460 6.47743 6.55810 6.62950 6.79762 6.88487 7.32376 7.45368 7.54446 7.66154 7.89893 8.22688 8.42084 8.54190 8.63519 9.70895 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.056422 B = 0.007222 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.143146 B = 3875.986522 C = 4282.989296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.165 4.165 3 C 0.394 3.606 4 O -0.495 6.495 5 C -0.351 4.351 6 C -0.020 4.020 7 C -0.241 4.241 8 C 0.144 3.856 9 C -0.427 4.427 10 H 0.092 0.908 11 C 0.070 3.930 12 N -0.756 5.756 13 Si 0.918 3.082 14 H -0.255 1.255 15 H -0.267 1.267 16 H -0.269 1.269 17 C -0.228 4.228 18 C 0.173 3.827 19 F -0.147 7.147 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.051 0.949 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.291 0.709 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.550 -4.999 -1.362 5.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.203 4.203 3 C 0.279 3.721 4 O -0.376 6.376 5 C -0.354 4.354 6 C -0.039 4.039 7 C -0.260 4.260 8 C 0.140 3.860 9 C -0.453 4.453 10 H 0.110 0.890 11 C -0.153 4.153 12 N -0.378 5.378 13 Si 0.741 3.259 14 H -0.178 1.178 15 H -0.191 1.191 16 H -0.194 1.194 17 C -0.248 4.248 18 C 0.153 3.847 19 F -0.126 7.126 20 H 0.075 0.925 21 H 0.075 0.925 22 H 0.070 0.930 23 H 0.106 0.894 24 H 0.106 0.894 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.103 0.897 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.995 -4.280 -1.204 4.556 hybrid contribution 0.753 0.401 -0.008 0.853 sum -0.241 -3.879 -1.212 4.071 Atomic orbital electron populations 1.21548 0.94791 1.00582 1.02699 1.21901 0.97103 0.97711 1.03600 1.21967 0.88438 0.89952 0.71756 1.90463 1.58715 1.47573 1.40885 1.19537 0.93938 0.92528 1.29410 1.20401 0.92965 0.96038 0.94457 1.20756 0.94392 0.96271 1.14631 1.17540 0.93164 0.90403 0.84856 1.19982 0.92612 1.00687 1.32036 0.88981 1.26239 1.01019 0.95627 0.92459 1.69728 1.37964 1.11138 1.18955 0.86086 0.80373 0.79793 0.79693 1.17824 1.19148 1.19429 1.20968 0.89717 1.01167 1.12962 1.17552 0.86865 0.82891 0.97379 1.91412 1.69443 1.58272 1.93434 0.92519 0.92527 0.92977 0.89399 0.89380 0.87652 0.87807 0.89724 0.85206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.20 37.16 0.34 -1.66 15 2 C -0.17 -2.62 5.01 -27.88 -0.14 -2.76 15 3 C 0.39 8.46 7.10 -30.89 -0.22 8.24 15 4 O -0.50 -12.10 14.94 5.52 0.08 -12.02 15 5 C -0.35 -8.16 5.89 -104.80 -0.62 -8.77 15 6 C -0.02 -0.41 9.40 -39.53 -0.37 -0.78 15 7 C -0.24 -5.35 9.72 -39.29 -0.38 -5.74 15 8 C 0.14 3.57 5.58 -106.81 -0.60 2.98 15 9 C -0.43 -10.15 9.04 -37.75 -0.34 -10.49 15 10 H 0.09 2.03 7.91 -52.49 -0.42 1.62 15 11 C 0.07 1.59 5.13 -17.30 -0.09 1.50 15 12 N -0.76 -18.06 10.95 55.57 0.61 -17.45 15 13 Si 0.92 16.63 29.60 -169.99 -5.03 11.60 15 14 H -0.25 -4.53 7.11 56.52 0.40 -4.13 15 15 H -0.27 -4.82 7.11 56.52 0.40 -4.42 15 16 H -0.27 -4.80 7.11 56.52 0.40 -4.40 15 17 C -0.23 -5.91 8.60 -39.21 -0.34 -6.24 15 18 C 0.17 4.45 7.24 -39.32 -0.28 4.17 15 19 F -0.15 -3.89 15.51 2.25 0.03 -3.86 15 20 H 0.06 0.86 8.10 -51.93 -0.42 0.44 15 21 H 0.06 0.85 8.10 -51.92 -0.42 0.43 15 22 H 0.05 0.60 8.14 -51.93 -0.42 0.17 15 23 H 0.09 1.23 8.08 -51.93 -0.42 0.81 15 24 H 0.09 1.25 8.07 -51.93 -0.42 0.83 15 25 H 0.11 1.77 7.01 -52.49 -0.37 1.40 15 26 H 0.10 2.06 8.06 -52.48 -0.42 1.64 15 27 H 0.29 6.22 8.29 -40.82 -0.34 5.88 15 28 H 0.13 3.46 6.15 -52.48 -0.32 3.14 15 LS Contribution 252.13 15.07 3.80 3.80 Total: -1.00 -27.76 252.13 -6.31 -34.07 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -2.76 Total: 3.42 kcal Atomic # 6 Polarization: -16.53 SS G_CDS: -3.04 Total: -19.56 kcal Atomic # 7 Polarization: -18.06 SS G_CDS: 0.61 Total: -17.45 kcal Atomic # 8 Polarization: -12.10 SS G_CDS: 0.08 Total: -12.02 kcal Atomic # 9 Polarization: -3.89 SS G_CDS: 0.03 Total: -3.86 kcal Atomic # 14 Polarization: 16.63 SS G_CDS: -5.03 Total: 11.60 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.76 -6.31 -34.07 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307230368.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.550 kcal (2) G-P(sol) polarization free energy of solvation -27.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds