Wall clock time and date at job start Thu Apr 9 2020 14:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50697 * 109.47367 * 2 1 4 4 O 1.21328 * 119.99990 * 359.97438 * 3 2 1 5 5 C 1.46713 * 120.00506 * 179.97438 * 3 2 1 6 6 C 1.40399 * 119.94008 * 359.71937 * 5 3 2 7 7 C 1.36122 * 120.10080 * 180.27107 * 6 5 3 8 8 C 1.41027 * 119.99557 * 0.03000 * 7 6 5 9 9 C 1.41029 * 120.05714 * 179.97438 * 8 7 6 10 10 H 1.07993 * 120.00024 * 24.70503 * 9 8 7 11 11 C 1.40309 * 119.99912 * 204.71006 * 9 8 7 12 12 N 1.30596 * 120.00198 * 17.89290 * 11 9 8 13 13 Si 1.86799 * 119.99792 * 197.89728 * 11 9 8 14 14 H 1.48501 * 109.47417 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47072 * 119.99600 * 13 11 9 16 16 H 1.48500 * 109.47342 * 239.99796 * 13 11 9 17 17 C 1.40811 * 119.88864 * 359.97430 * 8 7 6 18 18 C 1.36570 * 119.89703 * 0.02562 * 17 8 7 19 19 F 1.35099 * 119.99552 * 180.02562 * 18 17 8 20 20 H 1.09001 * 109.47018 * 300.00262 * 1 2 3 21 21 H 1.09007 * 109.46871 * 60.00021 * 1 2 3 22 22 H 1.09001 * 109.47048 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47018 * 239.99738 * 2 1 3 24 24 H 1.09003 * 109.47074 * 119.99508 * 2 1 3 25 25 H 1.07996 * 119.94876 * 0.25730 * 6 5 3 26 26 H 1.08008 * 120.00324 * 179.97438 * 7 6 5 27 27 H 0.97006 * 119.99834 * 179.97438 * 12 11 9 28 28 H 1.08004 * 120.05505 * 180.02562 * 17 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2440 2.3430 -0.0005 5 6 3.4748 1.6889 0.0006 6 6 4.3861 0.6209 0.0071 7 6 5.7250 0.8659 0.0132 8 6 6.1987 2.1943 0.0136 9 6 7.5856 2.4497 0.0205 10 1 8.2726 1.7113 -0.3656 11 6 8.0730 3.6631 0.5292 12 7 7.3181 4.3978 1.3011 13 14 9.8016 4.2278 0.1021 14 1 10.4464 3.2233 -0.7815 15 1 9.7362 5.5351 -0.5992 16 1 10.5968 4.3735 1.3478 17 6 5.2844 3.2652 0.0072 18 6 3.9420 3.0142 0.0011 19 9 3.0631 4.0402 -0.0056 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8901 22 1 -0.3633 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8901 25 1 4.0242 -0.3966 0.0074 26 1 6.4247 0.0431 0.0186 27 1 7.6553 5.2365 1.6531 28 1 5.6442 4.2836 0.0071 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307230368.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:42 Heat of formation + Delta-G solvation = -101.503893 kcal Electronic energy + Delta-G solvation = -14512.404737 eV Core-core repulsion = 11827.189460 eV Total energy + Delta-G solvation = -2685.215277 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 222.080 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -49.60389 -40.33322 -38.85803 -35.79037 -33.68241 -31.96639 -31.06492 -28.28048 -25.40985 -23.66831 -22.48882 -20.41217 -19.61902 -17.98289 -17.23187 -16.89142 -16.59800 -16.50538 -15.90035 -15.56920 -15.02091 -14.56057 -14.02130 -13.95468 -13.73001 -13.24424 -13.06659 -12.82714 -12.61968 -12.48814 -12.26789 -11.94742 -11.92061 -11.70352 -11.20572 -10.28042 -9.62228 -9.45962 -8.90460 -6.63945 0.13279 0.96264 1.32144 1.38542 1.55422 1.82035 2.10717 2.60435 3.45408 3.49473 3.75647 4.19016 4.32690 4.35148 4.59865 4.73335 4.86998 4.90705 5.00299 5.07947 5.10117 5.12783 5.35863 5.55411 5.66647 5.72831 5.86756 6.08416 6.41009 6.61256 6.73309 6.98038 8.02507 Molecular weight = 222.08amu Principal moments of inertia in cm(-1) A = 0.056422 B = 0.007222 C = 0.006536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.143146 B = 3875.986522 C = 4282.989296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.156 4.156 3 C 0.388 3.612 4 O -0.535 6.535 5 C -0.368 4.368 6 C -0.005 4.005 7 C -0.248 4.248 8 C 0.118 3.882 9 C -0.448 4.448 10 H 0.107 0.893 11 C 0.029 3.971 12 N -0.794 5.794 13 Si 0.994 3.006 14 H -0.244 1.244 15 H -0.268 1.268 16 H -0.261 1.261 17 C -0.251 4.251 18 C 0.141 3.859 19 F -0.162 7.162 20 H 0.041 0.959 21 H 0.042 0.958 22 H 0.090 0.910 23 H 0.117 0.883 24 H 0.115 0.885 25 H 0.157 0.843 26 H 0.131 0.869 27 H 0.299 0.701 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.317 -7.541 -1.633 7.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.193 4.193 3 C 0.275 3.725 4 O -0.419 6.419 5 C -0.371 4.371 6 C -0.023 4.023 7 C -0.268 4.268 8 C 0.114 3.886 9 C -0.474 4.474 10 H 0.125 0.875 11 C -0.191 4.191 12 N -0.416 5.416 13 Si 0.813 3.187 14 H -0.167 1.167 15 H -0.192 1.192 16 H -0.186 1.186 17 C -0.271 4.271 18 C 0.121 3.879 19 F -0.141 7.141 20 H 0.060 0.940 21 H 0.062 0.938 22 H 0.109 0.891 23 H 0.135 0.865 24 H 0.133 0.867 25 H 0.175 0.825 26 H 0.149 0.851 27 H 0.110 0.890 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.137 -6.844 -1.473 7.002 hybrid contribution 0.450 1.192 0.096 1.277 sum 0.312 -5.652 -1.377 5.826 Atomic orbital electron populations 1.21565 0.93884 1.02630 1.01401 1.21931 0.97871 0.93398 1.06076 1.22721 0.87328 0.92434 0.70027 1.90448 1.59302 1.49615 1.42562 1.20043 0.96001 0.91912 1.29169 1.20837 0.91928 0.97617 0.91896 1.21094 0.95739 0.95768 1.14150 1.17937 0.93714 0.91422 0.85551 1.20378 0.92652 1.01990 1.32347 0.87462 1.27226 1.05200 0.95137 0.91548 1.69790 1.40153 1.11818 1.19864 0.84959 0.74930 0.79156 0.79649 1.16685 1.19229 1.18564 1.20927 0.90340 1.00857 1.15000 1.18061 0.86880 0.84071 0.98883 1.91359 1.69829 1.59170 1.93771 0.93993 0.93838 0.89126 0.86498 0.86725 0.82525 0.85112 0.88958 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.56 9.20 71.98 0.66 -2.90 15 2 C -0.16 -4.33 5.01 29.85 0.15 -4.18 15 3 C 0.39 16.24 7.10 27.90 0.20 16.43 15 4 O -0.54 -26.53 14.94 -3.18 -0.05 -26.58 15 5 C -0.37 -16.91 5.89 -19.98 -0.12 -17.03 15 6 C 0.00 -0.18 9.40 22.30 0.21 0.03 15 7 C -0.25 -10.57 9.72 22.46 0.22 -10.35 15 8 C 0.12 5.88 5.58 -21.28 -0.12 5.76 15 9 C -0.45 -21.24 9.04 23.46 0.21 -21.03 15 10 H 0.11 4.60 7.91 -2.91 -0.02 4.58 15 11 C 0.03 1.33 5.13 85.38 0.44 1.77 15 12 N -0.79 -38.96 10.95 21.89 0.24 -38.72 15 13 Si 0.99 33.51 29.60 68.60 2.03 35.54 15 14 H -0.24 -7.74 7.11 99.48 0.71 -7.03 15 15 H -0.27 -8.97 7.11 99.48 0.71 -8.27 15 16 H -0.26 -8.41 7.11 99.48 0.71 -7.71 15 17 C -0.25 -13.57 8.60 22.51 0.19 -13.37 15 18 C 0.14 7.51 7.24 22.44 0.16 7.68 15 19 F -0.16 -9.09 15.51 44.97 0.70 -8.39 15 20 H 0.04 1.19 8.10 -2.39 -0.02 1.17 15 21 H 0.04 1.22 8.10 -2.38 -0.02 1.20 15 22 H 0.09 1.66 8.14 -2.39 -0.02 1.64 15 23 H 0.12 2.65 8.08 -2.39 -0.02 2.63 15 24 H 0.11 2.66 8.07 -2.39 -0.02 2.64 15 25 H 0.16 4.39 7.01 -2.91 -0.02 4.37 15 26 H 0.13 4.78 8.06 -2.91 -0.02 4.75 15 27 H 0.30 13.11 8.29 -92.70 -0.77 12.34 15 28 H 0.11 6.16 6.15 -2.91 -0.02 6.14 15 Total: -1.00 -63.19 252.13 6.30 -56.90 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 1.17 Total: 18.47 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 2.21 Total: -37.21 kcal Atomic # 7 Polarization: -38.96 SS G_CDS: 0.24 Total: -38.72 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.05 Total: -26.58 kcal Atomic # 9 Polarization: -9.09 SS G_CDS: 0.70 Total: -8.39 kcal Atomic # 14 Polarization: 33.51 SS G_CDS: 2.03 Total: 35.54 kcal Total: -63.19 6.30 -56.90 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307230368.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.609 kcal (2) G-P(sol) polarization free energy of solvation -63.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds