Wall clock time and date at job start Thu Apr 9 2020 14:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42905 * 114.00228 * 2 1 4 4 C 1.52994 * 109.47575 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47214 * 294.83847 * 4 3 2 6 6 C 1.50705 * 109.46762 * 54.83485 * 4 3 2 7 7 H 1.07999 * 119.99512 * 112.24369 * 6 4 3 8 8 C 1.37878 * 120.00213 * 292.23786 * 6 4 3 9 9 N 1.31513 * 119.99974 * 148.75641 * 8 6 4 10 10 Si 1.86799 * 119.99795 * 328.75911 * 8 6 4 11 11 H 1.48501 * 109.47257 * 86.05370 * 10 8 6 12 12 H 1.48504 * 109.46814 * 206.05314 * 10 8 6 13 13 H 1.48502 * 109.47366 * 326.05379 * 10 8 6 14 14 C 1.50695 * 109.47475 * 174.83669 * 4 3 2 15 15 C 1.38238 * 120.00080 * 28.19354 * 14 4 3 16 16 C 1.38233 * 120.00428 * 179.97438 * 15 14 4 17 17 C 1.38240 * 119.99678 * 359.96680 * 16 15 14 18 18 C 1.38232 * 119.99954 * 0.26983 * 17 16 15 19 19 C 1.38234 * 120.00071 * 359.51389 * 18 17 16 20 20 H 1.08999 * 109.47139 * 60.00065 * 1 2 3 21 21 H 1.09001 * 109.46745 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47360 * 300.00167 * 1 2 3 23 23 H 1.09003 * 109.47085 * 59.99278 * 3 2 1 24 24 H 1.08998 * 109.46824 * 299.99827 * 3 2 1 25 25 H 0.96701 * 113.99478 * 300.00208 * 5 4 3 26 26 H 0.97001 * 120.00059 * 179.97438 * 9 8 6 27 27 H 1.08004 * 119.99634 * 359.97438 * 15 14 4 28 28 H 1.07996 * 120.00245 * 179.97438 * 16 15 14 29 29 H 1.08002 * 119.99891 * 179.97438 * 17 16 15 30 30 H 1.08001 * 120.00201 * 179.72422 * 18 17 16 31 31 H 1.08001 * 119.99922 * 180.24960 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9652 0.5832 1.2236 6 6 3.9720 0.3291 -1.1606 7 1 4.5226 0.7694 -1.9787 8 6 3.6687 -1.0158 -1.1784 9 7 3.4658 -1.6290 -2.3241 10 14 3.5458 -1.9668 0.4246 11 1 2.1735 -1.8328 0.9758 12 1 3.8405 -3.4005 0.1734 13 1 4.5259 -1.4234 1.3990 14 6 4.1480 2.5556 -0.1272 15 6 3.4688 3.6630 0.3453 16 6 4.0308 4.9205 0.2285 17 6 5.2726 5.0705 -0.3602 18 6 5.9496 3.9638 -0.8371 19 6 5.3895 2.7058 -0.7163 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.6886 1.8465 0.8899 24 1 1.6887 1.8463 -0.8900 25 1 3.7180 1.0811 2.0149 26 1 3.2527 -2.5752 -2.3366 27 1 2.4989 3.5457 0.8057 28 1 3.5000 5.7857 0.5973 29 1 5.7116 6.0531 -0.4518 30 1 6.9178 4.0815 -1.3011 31 1 5.9203 1.8406 -1.0853 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116865915.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:14 Heat of formation + Delta-G solvation = -75.071577 kcal Electronic energy + Delta-G solvation = -15634.500113 eV Core-core repulsion = 13073.891332 eV Total energy + Delta-G solvation = -2560.608781 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.61431 -38.74275 -37.11537 -34.46121 -32.72985 -31.75415 -29.65701 -27.63204 -26.46117 -23.99082 -23.01379 -21.27405 -19.07961 -18.28859 -17.31901 -16.75007 -16.67172 -16.49400 -15.99027 -15.35828 -15.05762 -14.58964 -14.21120 -14.09695 -13.92494 -13.37739 -13.18382 -12.65013 -12.50791 -12.30166 -12.12380 -11.79433 -11.57832 -10.80029 -10.53979 -10.38359 -10.14279 -9.69638 -9.53394 -8.28800 -6.24232 0.55286 0.62986 1.50365 1.68404 1.90161 2.70998 2.92118 3.13222 3.22445 4.05280 4.10961 4.21661 4.28435 4.34944 4.40356 4.53132 4.57033 4.66254 4.74331 4.81866 4.84263 4.93235 5.23042 5.29233 5.63782 5.67512 5.72984 5.95993 6.22144 6.37789 6.51365 6.70670 7.26000 7.53081 8.81783 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.032230 B = 0.011502 C = 0.009950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.554029 B = 2433.679056 C = 2813.425682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.389 6.389 3 C 0.053 3.947 4 C 0.260 3.740 5 O -0.559 6.559 6 C -0.550 4.550 7 H 0.044 0.956 8 C 0.075 3.925 9 N -0.912 5.912 10 Si 0.972 3.028 11 H -0.251 1.251 12 H -0.340 1.340 13 H -0.257 1.257 14 C -0.100 4.100 15 C -0.132 4.132 16 C -0.124 4.124 17 C -0.126 4.126 18 C -0.134 4.134 19 C -0.113 4.113 20 H 0.039 0.961 21 H 0.078 0.922 22 H 0.058 0.942 23 H 0.060 0.940 24 H 0.036 0.964 25 H 0.356 0.644 26 H 0.262 0.738 27 H 0.135 0.865 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.135 0.865 31 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.814 12.165 7.690 14.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.308 6.308 3 C -0.024 4.024 4 C 0.221 3.779 5 O -0.367 6.367 6 C -0.585 4.585 7 H 0.062 0.938 8 C -0.129 4.129 9 N -0.548 5.548 10 Si 0.804 3.196 11 H -0.177 1.177 12 H -0.272 1.272 13 H -0.183 1.183 14 C -0.101 4.101 15 C -0.150 4.150 16 C -0.141 4.141 17 C -0.143 4.143 18 C -0.152 4.152 19 C -0.131 4.131 20 H 0.057 0.943 21 H 0.097 0.903 22 H 0.076 0.924 23 H 0.078 0.922 24 H 0.054 0.946 25 H 0.204 0.796 26 H 0.071 0.929 27 H 0.152 0.848 28 H 0.170 0.830 29 H 0.169 0.831 30 H 0.153 0.847 31 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.522 11.440 7.161 13.730 hybrid contribution -0.332 -0.470 0.317 0.657 sum -2.854 10.970 7.477 13.579 Atomic orbital electron populations 1.22813 0.81682 1.02565 1.00326 1.88169 1.19604 1.27899 1.95146 1.23293 0.95949 0.84465 0.98692 1.18085 0.88538 0.88080 0.83227 1.86980 1.81656 1.51939 1.16139 1.20543 1.40762 0.94441 1.02799 0.93837 1.25530 0.90052 0.98679 0.98635 1.70266 1.44122 1.11212 1.29182 0.85600 0.80234 0.71799 0.81918 1.17682 1.27230 1.18271 1.20537 0.95541 0.95593 0.98410 1.21366 1.00367 0.92478 1.00776 1.21449 0.96006 0.97160 0.99502 1.21468 0.95397 0.99096 0.98372 1.21418 1.00871 0.92215 1.00689 1.21217 0.95927 0.97699 0.98299 0.94251 0.90334 0.92399 0.92242 0.94562 0.79587 0.92913 0.84764 0.82953 0.83086 0.84714 0.88304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.77 11.01 113.37 1.25 2.02 16 2 O -0.39 -17.84 5.65 -144.51 -0.82 -18.66 16 3 C 0.05 2.21 4.12 71.98 0.30 2.51 16 4 C 0.26 12.19 0.83 -12.29 -0.01 12.18 16 5 O -0.56 -25.59 8.27 -144.51 -1.20 -26.78 16 6 C -0.55 -32.26 7.85 25.60 0.20 -32.06 16 7 H 0.04 2.79 6.69 -2.91 -0.02 2.77 16 8 C 0.07 4.54 4.49 84.66 0.38 4.92 16 9 N -0.91 -58.20 13.96 21.45 0.30 -57.90 16 10 Si 0.97 51.61 24.30 68.60 1.67 53.28 16 11 H -0.25 -12.72 6.02 99.48 0.60 -12.12 16 12 H -0.34 -18.40 7.11 99.48 0.71 -17.69 16 13 H -0.26 -13.49 5.99 99.48 0.60 -12.90 16 14 C -0.10 -4.08 5.07 -19.87 -0.10 -4.18 16 15 C -0.13 -4.17 9.14 22.27 0.20 -3.96 16 16 C -0.12 -3.18 10.05 22.27 0.22 -2.95 16 17 C -0.13 -3.25 10.05 22.27 0.22 -3.02 16 18 C -0.13 -4.26 10.05 22.27 0.22 -4.03 16 19 C -0.11 -4.65 8.85 22.27 0.20 -4.45 16 20 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 21 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 22 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.06 1.98 6.84 -2.39 -0.02 1.96 16 24 H 0.04 1.55 8.14 -2.39 -0.02 1.54 16 25 H 0.36 12.57 9.04 -74.06 -0.67 11.90 16 26 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 27 H 0.13 3.61 6.25 -2.91 -0.02 3.59 16 28 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 29 H 0.15 2.74 8.06 -2.91 -0.02 2.72 16 30 H 0.13 3.59 8.06 -2.91 -0.02 3.57 16 31 H 0.10 4.65 6.69 -2.91 -0.02 4.63 16 Total: -1.00 -73.18 253.35 3.28 -69.90 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: 0.24 Total: 13.21 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 3.09 Total: -33.04 kcal Atomic # 7 Polarization: -58.20 SS G_CDS: 0.30 Total: -57.90 kcal Atomic # 8 Polarization: -43.43 SS G_CDS: -2.01 Total: -45.44 kcal Atomic # 14 Polarization: 51.61 SS G_CDS: 1.67 Total: 53.28 kcal Total: -73.18 3.28 -69.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116865915.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.170 kcal (2) G-P(sol) polarization free energy of solvation -73.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds