Wall clock time and date at job start Thu Apr 9 2020 14:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00167 * 2 1 4 4 H 1.48506 * 109.47073 * 89.99666 * 3 2 1 5 5 H 1.48496 * 109.46988 * 209.99872 * 3 2 1 6 6 H 1.48504 * 109.46851 * 329.99931 * 3 2 1 7 7 C 1.37875 * 120.00015 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00375 * 187.12528 * 7 2 1 9 9 C 1.50706 * 120.00108 * 7.12191 * 7 2 1 10 10 H 1.09004 * 109.46498 * 35.55866 * 9 7 2 11 11 N 1.46897 * 109.47091 * 275.56417 * 9 7 2 12 12 C 1.50691 * 109.47278 * 155.55771 * 9 7 2 13 13 C 1.38169 * 120.02995 * 100.00194 * 12 9 7 14 14 C 1.38245 * 120.06027 * 179.97438 * 13 12 9 15 15 C 1.50694 * 119.94412 * 180.02562 * 14 13 12 16 16 N 1.46894 * 109.47033 * 90.00326 * 15 14 13 17 17 C 1.38290 * 120.10745 * 0.02562 * 14 13 12 18 18 C 1.38124 * 120.05809 * 359.97438 * 17 14 13 19 19 C 1.38715 * 120.02918 * 279.72358 * 12 9 7 20 20 O 1.35893 * 120.05415 * 0.02562 * 19 12 9 21 21 H 0.97003 * 120.00047 * 175.37551 * 1 2 3 22 22 H 1.00905 * 110.99840 * 306.91491 * 11 9 7 23 23 H 1.00899 * 111.00679 * 70.86959 * 11 9 7 24 24 H 1.08008 * 119.96649 * 359.97438 * 13 12 9 25 25 H 1.09007 * 109.46632 * 209.99892 * 15 14 13 26 26 H 1.09002 * 109.47201 * 329.99649 * 15 14 13 27 27 H 1.00909 * 110.99942 * 179.97438 * 16 15 14 28 28 H 1.00908 * 111.00181 * 303.94892 * 16 15 14 29 29 H 1.08001 * 119.97021 * 180.02562 * 17 14 13 30 30 H 1.08000 * 120.02814 * 180.02562 * 18 17 14 31 31 H 0.96702 * 114.00462 * 89.99985 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4401 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0783 -1.1977 0.1165 9 6 1.2598 -2.4942 -0.1607 10 1 0.4231 -2.3512 -0.8446 11 7 0.7539 -2.9341 1.1464 12 6 2.1904 -3.5406 -0.7173 13 6 2.7686 -4.4705 0.1254 14 6 3.6220 -5.4310 -0.3847 15 6 4.2507 -6.4443 0.5367 16 7 3.3795 -7.6228 0.6358 17 6 3.8998 -5.4634 -1.7390 18 6 3.3244 -4.5361 -2.5856 19 6 2.4629 -3.5746 -2.0770 20 8 1.8915 -2.6644 -2.9086 21 1 -0.4850 -0.8373 -0.0677 22 1 1.4960 -2.9653 1.8295 23 1 -0.0012 -2.3428 1.4597 24 1 2.5535 -4.4469 1.1836 25 1 5.2215 -6.7423 0.1406 26 1 4.3811 -6.0046 1.5256 27 1 3.7796 -8.3178 1.2483 28 1 2.4529 -7.3631 0.9395 29 1 4.5665 -6.2151 -2.1351 30 1 3.5413 -4.5622 -3.6433 31 1 2.4116 -1.8575 -3.0256 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000211718170.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:35 Heat of formation + Delta-G solvation = -54.736202 kcal Electronic energy + Delta-G solvation = -15085.854750 eV Core-core repulsion = 12558.420528 eV Total energy + Delta-G solvation = -2527.434222 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.86602 -37.93023 -37.02808 -35.02269 -33.57593 -31.03666 -30.50338 -27.61305 -25.49589 -24.86305 -22.57426 -21.43226 -19.38889 -18.83044 -17.37927 -17.16448 -16.46135 -16.03088 -15.74279 -15.39092 -15.30760 -14.87847 -14.54453 -14.05630 -14.00163 -13.61316 -12.82592 -12.80496 -12.61968 -12.53675 -12.00310 -11.72794 -11.47619 -11.11537 -10.76954 -9.74066 -9.63182 -9.43272 -9.17248 -8.58013 -6.45246 0.36879 0.57203 1.49920 1.56594 1.75061 2.49363 2.77124 3.10894 3.52221 3.85433 3.92124 3.97732 4.05319 4.28772 4.45334 4.61303 4.73878 4.83007 4.93923 5.06409 5.27631 5.44258 5.69211 5.75214 5.86552 6.03540 6.04514 6.18554 6.48236 6.52865 6.62107 6.78374 6.91198 7.36544 8.67334 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.033994 B = 0.008459 C = 0.007759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.473102 B = 3309.396405 C = 3607.752700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.016 4.016 3 Si 1.115 2.885 4 H -0.277 1.277 5 H -0.272 1.272 6 H -0.285 1.285 7 C -0.623 4.623 8 H 0.039 0.961 9 C 0.233 3.767 10 H 0.015 0.985 11 N -0.842 5.842 12 C -0.085 4.085 13 C -0.101 4.101 14 C -0.100 4.100 15 C 0.111 3.889 16 N -0.850 5.850 17 C -0.102 4.102 18 C -0.150 4.150 19 C 0.079 3.921 20 O -0.510 6.510 21 H 0.259 0.741 22 H 0.328 0.672 23 H 0.325 0.675 24 H 0.121 0.879 25 H 0.094 0.906 26 H 0.039 0.961 27 H 0.354 0.646 28 H 0.342 0.658 29 H 0.150 0.850 30 H 0.143 0.857 31 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.802 -9.566 0.017 13.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.217 4.217 3 Si 0.938 3.062 4 H -0.203 1.203 5 H -0.197 1.197 6 H -0.210 1.210 7 C -0.663 4.663 8 H 0.058 0.942 9 C 0.123 3.877 10 H 0.033 0.967 11 N -0.368 5.368 12 C -0.087 4.087 13 C -0.120 4.120 14 C -0.100 4.100 15 C -0.019 4.019 16 N -0.382 5.382 17 C -0.121 4.121 18 C -0.169 4.169 19 C 0.034 3.966 20 O -0.321 6.321 21 H 0.070 0.930 22 H 0.139 0.861 23 H 0.135 0.865 24 H 0.139 0.861 25 H 0.113 0.887 26 H 0.057 0.943 27 H 0.168 0.832 28 H 0.154 0.846 29 H 0.167 0.833 30 H 0.160 0.840 31 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 9.100 -9.152 -1.126 12.956 hybrid contribution 0.233 0.259 1.233 1.281 sum 9.333 -8.894 0.106 12.893 Atomic orbital electron populations 1.70915 1.07774 1.30577 1.47101 1.27186 0.96402 1.06014 0.92081 0.82939 0.74205 0.71506 0.77566 1.20279 1.19658 1.21031 1.22641 0.94938 0.93232 1.55484 0.94224 1.17771 0.91822 0.89916 0.88188 0.96714 1.59499 1.13785 1.57828 1.05698 1.20585 0.98272 0.96575 0.93226 1.20802 0.96937 0.94634 0.99636 1.20032 0.98161 0.96603 0.95205 1.20618 0.96324 0.88827 0.96155 1.58705 1.06365 1.12946 1.60141 1.21029 1.00316 0.98357 0.92356 1.21528 0.97346 0.96736 1.01246 1.18639 0.96323 0.93286 0.88388 1.84659 1.50564 1.31111 1.65815 0.93042 0.86067 0.86486 0.86140 0.88731 0.94328 0.83155 0.84584 0.83257 0.83971 0.74819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.49 13.63 21.45 0.29 -54.20 16 2 C -0.02 -0.88 5.45 84.65 0.46 -0.42 16 3 Si 1.12 48.45 29.91 68.60 2.05 50.50 16 4 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.62 -33.52 8.52 25.60 0.22 -33.30 16 8 H 0.04 2.16 7.81 -2.91 -0.02 2.14 16 9 C 0.23 11.86 2.22 43.42 0.10 11.96 16 10 H 0.01 0.88 6.75 -2.38 -0.02 0.86 16 11 N -0.84 -38.94 8.51 -174.96 -1.49 -40.43 16 12 C -0.09 -3.84 5.08 -19.77 -0.10 -3.94 16 13 C -0.10 -3.86 8.92 22.26 0.20 -3.66 16 14 C -0.10 -3.10 5.39 -19.85 -0.11 -3.21 16 15 C 0.11 2.58 6.91 85.56 0.59 3.17 16 16 N -0.85 -18.18 9.61 -190.02 -1.83 -20.00 16 17 C -0.10 -3.06 9.69 22.25 0.22 -2.84 16 18 C -0.15 -5.09 9.99 22.37 0.22 -4.87 16 19 C 0.08 3.30 6.67 22.51 0.15 3.45 16 20 O -0.51 -21.96 12.73 -92.35 -1.18 -23.14 16 21 H 0.26 15.57 6.21 -92.71 -0.58 14.99 16 22 H 0.33 14.21 7.64 -89.69 -0.68 13.52 16 23 H 0.32 15.69 8.43 -89.69 -0.76 14.94 16 24 H 0.12 4.47 6.43 -2.91 -0.02 4.45 16 25 H 0.09 1.85 8.08 -2.38 -0.02 1.83 16 26 H 0.04 0.86 8.08 -2.39 -0.02 0.84 16 27 H 0.35 5.52 9.08 -89.69 -0.81 4.71 16 28 H 0.34 7.82 8.99 -89.69 -0.81 7.01 16 29 H 0.15 3.46 8.06 -2.91 -0.02 3.44 16 30 H 0.14 4.04 8.06 -2.91 -0.02 4.02 16 31 H 0.39 14.70 9.06 -74.06 -0.67 14.03 16 Total: -1.00 -64.36 267.24 -2.53 -66.89 By element: Atomic # 1 Polarization: 56.38 SS G_CDS: -2.33 Total: 54.05 kcal Atomic # 6 Polarization: -35.62 SS G_CDS: 1.95 Total: -33.67 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -3.02 Total: -114.63 kcal Atomic # 8 Polarization: -21.96 SS G_CDS: -1.18 Total: -23.14 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.05 Total: 50.50 kcal Total: -64.36 -2.53 -66.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211718170.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.153 kcal (2) G-P(sol) polarization free energy of solvation -64.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds