Wall clock time and date at job start Thu Apr 9 2020 14:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48501 * 109.46977 * 269.99863 * 3 2 1 5 5 H 1.48502 * 109.47050 * 29.99950 * 3 2 1 6 6 H 1.48495 * 109.47083 * 149.99825 * 3 2 1 7 7 C 1.37876 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00334 * 179.97438 * 7 2 1 9 9 C 1.50707 * 120.00037 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.46877 * 59.99751 * 9 7 2 11 11 N 1.46903 * 109.46855 * 299.99727 * 9 7 2 12 12 C 1.50702 * 109.47111 * 180.02562 * 9 7 2 13 13 C 1.38304 * 119.92574 * 99.97213 * 12 9 7 14 14 C 1.38077 * 120.07712 * 180.02562 * 13 12 9 15 15 C 1.38943 * 119.92282 * 0.02562 * 14 13 12 16 16 N 1.39670 * 120.07478 * 180.02562 * 15 14 13 17 17 C 1.38884 * 119.84955 * 0.02562 * 15 14 13 18 18 C 1.38125 * 119.92856 * 359.97438 * 17 15 14 19 19 C 1.50698 * 119.96901 * 179.72380 * 18 17 15 20 20 O 1.42907 * 109.46841 * 0.02562 * 19 18 17 21 21 H 0.96997 * 120.00332 * 0.02562 * 1 2 3 22 22 H 1.00899 * 110.99640 * 176.04080 * 11 9 7 23 23 H 1.00899 * 111.00200 * 300.00279 * 11 9 7 24 24 H 1.07998 * 119.96277 * 0.02852 * 13 12 9 25 25 H 1.08000 * 120.04025 * 180.02562 * 14 13 12 26 26 H 0.96998 * 120.00321 * 179.97438 * 16 15 14 27 27 H 0.97005 * 119.99860 * 359.97438 * 16 15 14 28 28 H 1.08002 * 120.03632 * 180.02562 * 17 15 14 29 29 H 1.09000 * 109.47013 * 119.99835 * 19 18 17 30 30 H 1.08997 * 109.47656 * 240.00154 * 19 18 17 31 31 H 0.96699 * 113.99946 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4401 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 1 0.6246 -2.5571 -0.8897 11 7 0.4060 -2.5767 1.1997 12 6 2.2303 -3.6447 0.0018 13 6 2.5200 -4.3034 1.1829 14 6 3.4172 -5.3530 1.1877 15 6 4.0296 -5.7467 0.0043 16 7 4.9373 -6.8083 0.0055 17 6 3.7372 -5.0823 -1.1797 18 6 2.8388 -4.0332 -1.1775 19 6 2.5255 -3.3076 -2.4606 20 8 3.2763 -3.8859 -3.5302 21 1 -0.4850 0.8400 -0.0004 22 1 -0.1580 -3.4133 1.1911 23 1 0.9637 -2.5251 2.0390 24 1 2.0439 -3.9966 2.1024 25 1 3.6426 -5.8673 2.1102 26 1 5.3639 -7.0826 -0.8213 27 1 5.1409 -7.2714 0.8332 28 1 4.2112 -5.3861 -2.1014 29 1 1.4606 -3.3942 -2.6763 30 1 2.7910 -2.2555 -2.3572 31 1 3.1238 -3.4677 -4.3887 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000211727359.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:37 Heat of formation + Delta-G solvation = -23.900103 kcal Electronic energy + Delta-G solvation = -15106.885402 eV Core-core repulsion = 12580.788334 eV Total energy + Delta-G solvation = -2526.097068 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.13335 -36.25875 -35.30590 -32.96387 -31.32300 -30.69348 -27.84480 -25.75693 -25.28512 -22.55231 -20.79699 -19.65306 -17.09680 -16.43093 -16.29359 -15.99420 -14.92061 -14.32089 -14.18231 -14.00055 -13.60159 -13.25804 -12.98093 -12.47427 -12.18590 -11.71104 -11.34065 -11.01624 -10.83881 -10.53975 -10.24784 -10.09408 -9.66270 -9.52389 -9.00121 -8.40336 -8.02979 -7.04642 -6.77512 -5.84062 -3.99243 2.07312 2.34906 3.33863 3.41726 3.45762 4.25499 4.45131 4.60777 4.73679 5.38928 5.47048 5.63835 5.89707 6.03801 6.18135 6.25019 6.34869 6.43374 6.52244 6.69146 6.90145 7.18103 7.34596 7.50011 7.63802 7.94245 7.99668 8.06273 8.12653 8.25595 8.70550 9.06862 9.20627 9.69206 11.19061 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.029405 B = 0.009128 C = 0.008102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.981793 B = 3066.651973 C = 3454.979303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.083 3.917 3 Si 0.880 3.120 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.526 4.526 8 H 0.053 0.947 9 C 0.258 3.742 10 H 0.045 0.955 11 N -0.812 5.812 12 C -0.121 4.121 13 C -0.088 4.088 14 C -0.198 4.198 15 C 0.181 3.819 16 N -0.889 5.889 17 C -0.174 4.174 18 C -0.042 4.042 19 C 0.117 3.883 20 O -0.580 6.580 21 H 0.255 0.745 22 H 0.298 0.702 23 H 0.318 0.682 24 H 0.116 0.884 25 H 0.107 0.893 26 H 0.391 0.609 27 H 0.390 0.610 28 H 0.120 0.880 29 H 0.057 0.943 30 H 0.080 0.920 31 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.758 -9.489 -2.088 11.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.123 4.123 3 Si 0.708 3.292 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.565 4.565 8 H 0.071 0.929 9 C 0.148 3.852 10 H 0.063 0.937 11 N -0.339 5.339 12 C -0.125 4.125 13 C -0.107 4.107 14 C -0.220 4.220 15 C 0.080 3.920 16 N -0.430 5.430 17 C -0.197 4.197 18 C -0.043 4.043 19 C 0.040 3.960 20 O -0.386 6.386 21 H 0.065 0.935 22 H 0.108 0.892 23 H 0.130 0.870 24 H 0.134 0.866 25 H 0.125 0.875 26 H 0.219 0.781 27 H 0.217 0.783 28 H 0.138 0.862 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 5.387 -9.005 -1.851 10.655 hybrid contribution 1.145 0.133 -0.081 1.156 sum 6.532 -8.872 -1.933 11.186 Atomic orbital electron populations 1.70102 1.05627 1.25591 1.46917 1.24954 0.94594 0.98413 0.94357 0.86813 0.80132 0.84281 0.77959 1.20836 1.21297 1.20021 1.20839 0.92194 0.89445 1.54040 0.92909 1.18085 0.87456 0.88977 0.90685 0.93748 1.59160 1.28197 1.41991 1.04504 1.21251 1.00873 0.98990 0.91432 1.20662 0.97339 0.94901 0.97815 1.20438 1.03462 1.02239 0.95909 1.17655 0.91174 0.89200 0.93995 1.42284 1.50602 1.37900 1.12172 1.20307 1.03518 0.99669 0.96200 1.19254 0.96192 0.94913 0.93966 1.21011 0.94168 0.96790 0.83997 1.86373 1.70003 1.62617 1.19560 0.93508 0.89187 0.86955 0.86628 0.87484 0.78140 0.78272 0.86239 0.92472 0.90202 0.77959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.32 12.77 55.43 0.71 -23.61 16 2 C 0.08 2.29 5.39 -17.82 -0.10 2.19 16 3 Si 0.88 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.53 -14.18 7.84 -34.44 -0.27 -14.45 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.26 6.29 2.32 -70.01 -0.16 6.13 16 10 H 0.04 1.18 7.06 -51.93 -0.37 0.81 16 11 N -0.81 -18.98 8.01 -6.64 -0.05 -19.03 16 12 C -0.12 -2.63 5.02 -104.59 -0.52 -3.15 16 13 C -0.09 -1.72 9.24 -39.62 -0.37 -2.09 16 14 C -0.20 -3.46 9.90 -39.38 -0.39 -3.85 16 15 C 0.18 3.09 6.75 -83.79 -0.57 2.53 16 16 N -0.89 -11.30 9.09 32.41 0.29 -11.00 16 17 C -0.17 -3.27 9.22 -39.38 -0.36 -3.64 16 18 C -0.04 -0.86 5.87 -104.65 -0.61 -1.48 16 19 C 0.12 2.22 6.23 36.00 0.22 2.45 16 20 O -0.58 -9.46 12.14 -35.23 -0.43 -9.89 16 21 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 22 H 0.30 6.26 9.06 -39.29 -0.36 5.90 16 23 H 0.32 7.11 7.27 -39.29 -0.29 6.83 16 24 H 0.12 2.13 6.23 -52.49 -0.33 1.80 16 25 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 26 H 0.39 4.29 8.84 -40.82 -0.36 3.93 16 27 H 0.39 4.07 8.84 -40.82 -0.36 3.71 16 28 H 0.12 2.14 7.00 -52.49 -0.37 1.77 16 29 H 0.06 1.07 7.55 -51.93 -0.39 0.68 16 30 H 0.08 1.64 7.36 -51.93 -0.38 1.25 16 31 H 0.37 4.21 9.12 45.56 0.42 4.63 16 LS Contribution 263.10 15.07 3.96 3.96 Total: -1.00 -31.16 263.10 -6.41 -37.57 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -2.75 Total: 21.21 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -3.13 Total: -15.36 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: 0.95 Total: -53.65 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.43 Total: -9.89 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -31.16 -6.41 -37.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000211727359.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.672 kcal (2) G-P(sol) polarization free energy of solvation -31.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds