Wall clock time and date at job start Thu Apr 9 2020 14:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00252 * 2 1 4 4 O 1.42898 * 109.47210 * 83.37737 * 3 2 1 5 5 C 1.42891 * 114.00078 * 291.33867 * 4 3 2 6 6 C 1.50708 * 109.46855 * 203.37846 * 3 2 1 7 7 C 1.37635 * 120.12993 * 345.30184 * 6 3 2 8 8 C 1.38612 * 120.24473 * 180.32041 * 7 6 3 9 9 C 1.38654 * 120.50655 * 359.67435 * 8 7 6 10 10 C 1.37598 * 120.24644 * 359.97438 * 9 8 7 11 11 C 1.40702 * 120.12327 * 165.00077 * 6 3 2 12 12 C 1.41399 * 120.24568 * 359.97438 * 11 6 3 13 13 H 1.07995 * 119.99747 * 29.26069 * 12 11 6 14 14 C 1.39940 * 119.99523 * 209.25909 * 12 11 6 15 15 N 1.30827 * 120.00026 * 198.32394 * 14 12 11 16 16 Si 1.86798 * 120.00297 * 18.33095 * 14 12 11 17 17 H 1.48498 * 109.47309 * 269.99708 * 16 14 12 18 18 H 1.48500 * 109.47060 * 29.99994 * 16 14 12 19 19 H 1.48509 * 109.47219 * 149.99767 * 16 14 12 20 20 H 1.09001 * 109.46657 * 64.22658 * 1 2 3 21 21 H 1.08997 * 109.47096 * 184.22298 * 1 2 3 22 22 H 1.08992 * 109.46828 * 304.22727 * 1 2 3 23 23 H 1.09003 * 109.47344 * 323.37218 * 3 2 1 24 24 H 1.09003 * 109.47534 * 75.14322 * 5 4 3 25 25 H 1.09002 * 109.47167 * 195.14656 * 5 4 3 26 26 H 1.08998 * 109.47197 * 315.14421 * 5 4 3 27 27 H 1.08003 * 119.87913 * 0.02562 * 7 6 3 28 28 H 1.08006 * 119.74863 * 179.69379 * 8 7 6 29 29 H 1.07994 * 119.87794 * 180.02562 * 9 8 7 30 30 H 1.07998 * 120.12802 * 180.02562 * 10 9 8 31 31 H 0.97002 * 119.99729 * 354.90571 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 8 2.0621 1.8037 1.3383 5 6 0.7810 2.0960 1.8996 6 6 3.4061 1.2337 -0.5638 7 6 4.0356 0.0171 -0.6973 8 6 5.3219 -0.0510 -1.2094 9 6 5.9863 1.1019 -1.5989 10 6 5.3737 2.3283 -1.4812 11 6 4.0682 2.4097 -0.9616 12 6 3.4288 3.6645 -0.8356 13 1 2.6971 3.8219 -0.0569 14 6 3.7440 4.7024 -1.7198 15 7 3.4477 5.9384 -1.4099 16 14 4.5877 4.3230 -3.3426 17 1 6.0604 4.3675 -3.1571 18 1 4.1876 2.9694 -3.8040 19 1 4.1859 5.3305 -4.3569 20 1 -0.3633 0.4469 -0.9255 21 1 -0.3633 -1.0248 0.0757 22 1 -0.3633 0.5780 0.8496 23 1 1.4047 1.9728 -0.6131 24 1 0.2802 1.1654 2.1664 25 1 0.9067 2.7097 2.7917 26 1 0.1788 2.6361 1.1690 27 1 3.5274 -0.8875 -0.3975 28 1 5.8102 -1.0095 -1.3061 29 1 6.9881 1.0371 -1.9970 30 1 5.8928 3.2251 -1.7855 31 1 2.9442 6.1287 -0.6029 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214634671.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:43 Heat of formation + Delta-G solvation = -93.547610 kcal Electronic energy + Delta-G solvation = -15447.954206 eV Core-core repulsion = 12886.544244 eV Total energy + Delta-G solvation = -2561.409962 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.63410 -39.04475 -36.91159 -35.63059 -32.60512 -31.99948 -28.96871 -26.90368 -26.76366 -25.44607 -23.05659 -21.55644 -20.05724 -18.26712 -18.09257 -17.82793 -16.41428 -16.06971 -15.65537 -15.35260 -15.30121 -14.79346 -14.45567 -14.33279 -13.87938 -13.56655 -13.25371 -12.97690 -12.58166 -12.39975 -12.11649 -11.90571 -11.59593 -11.19152 -10.98112 -10.88327 -10.74197 -9.63373 -9.48015 -9.20228 -6.58276 0.70125 0.87445 1.38447 1.55836 1.77116 2.18889 2.58573 2.67155 3.01751 3.58003 3.87456 4.16262 4.22975 4.34615 4.38303 4.41563 4.48021 4.49328 4.63806 4.79006 4.83240 4.98127 5.17399 5.45239 5.52962 5.71753 5.81837 5.94607 6.10238 6.16031 6.26591 6.43140 6.65577 6.84532 7.99566 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.024756 B = 0.012433 C = 0.009456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.758588 B = 2251.589807 C = 2960.522571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.004 3.996 2 O -0.409 6.409 3 C 0.320 3.680 4 O -0.412 6.412 5 C 0.016 3.984 6 C -0.214 4.214 7 C -0.052 4.052 8 C -0.236 4.236 9 C -0.072 4.072 10 C -0.260 4.260 11 C 0.093 3.907 12 C -0.539 4.539 13 H 0.054 0.946 14 C 0.012 3.988 15 N -0.841 5.841 16 Si 1.103 2.897 17 H -0.256 1.256 18 H -0.264 1.264 19 H -0.281 1.281 20 H 0.044 0.956 21 H 0.112 0.888 22 H 0.060 0.940 23 H 0.043 0.957 24 H 0.066 0.934 25 H 0.091 0.909 26 H 0.041 0.959 27 H 0.119 0.881 28 H 0.134 0.866 29 H 0.136 0.864 30 H 0.108 0.892 31 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.591 -8.263 0.102 9.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 O -0.330 6.330 3 C 0.227 3.773 4 O -0.333 6.333 5 C -0.079 4.079 6 C -0.215 4.215 7 C -0.070 4.070 8 C -0.255 4.255 9 C -0.089 4.089 10 C -0.279 4.279 11 C 0.090 3.910 12 C -0.569 4.569 13 H 0.072 0.928 14 C -0.202 4.202 15 N -0.465 5.465 16 Si 0.924 3.076 17 H -0.181 1.181 18 H -0.188 1.188 19 H -0.207 1.207 20 H 0.063 0.937 21 H 0.130 0.870 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.110 0.890 26 H 0.060 0.940 27 H 0.137 0.863 28 H 0.152 0.848 29 H 0.153 0.847 30 H 0.126 0.874 31 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.733 -7.595 -1.073 8.143 hybrid contribution -1.515 0.059 1.802 2.355 sum -4.247 -7.536 0.729 8.681 Atomic orbital electron populations 1.23388 0.79776 1.04840 1.01136 1.87915 1.21478 1.29579 1.93983 1.21269 0.92719 0.81118 0.82242 1.88142 1.30482 1.83488 1.31232 1.23148 0.85191 1.00613 0.98971 1.19467 0.95065 0.94221 1.12758 1.20798 0.94509 0.96237 0.95419 1.20947 0.96048 0.98424 1.10082 1.21123 0.99326 0.92062 0.96438 1.21297 0.95789 0.98111 1.12700 1.17697 0.91673 0.92231 0.89407 1.20606 1.23515 0.97464 1.15308 0.92811 1.28287 0.94936 0.91197 1.05740 1.70613 1.28628 1.20574 1.26684 0.83235 0.77045 0.76563 0.70772 1.18108 1.18814 1.20733 0.93686 0.87008 0.92202 0.93938 0.91539 0.89013 0.94005 0.86266 0.84827 0.84669 0.87394 0.91279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.11 10.57 113.37 1.20 1.31 16 2 O -0.41 -15.76 9.15 -126.21 -1.15 -16.92 16 3 C 0.32 14.40 2.26 71.24 0.16 14.56 16 4 O -0.41 -18.55 10.03 -126.21 -1.27 -19.82 16 5 C 0.02 0.53 9.55 113.37 1.08 1.62 16 6 C -0.21 -10.53 5.54 -19.40 -0.11 -10.64 16 7 C -0.05 -2.26 9.35 22.22 0.21 -2.05 16 8 C -0.24 -9.38 10.05 22.46 0.23 -9.15 16 9 C -0.07 -2.93 10.02 22.22 0.22 -2.71 16 10 C -0.26 -12.48 7.31 22.73 0.17 -12.31 16 11 C 0.09 4.89 5.11 -21.29 -0.11 4.78 16 12 C -0.54 -30.29 8.54 23.46 0.20 -30.09 16 13 H 0.05 3.21 6.99 -2.91 -0.02 3.19 16 14 C 0.01 0.65 5.40 85.25 0.46 1.11 16 15 N -0.84 -46.72 13.65 21.83 0.30 -46.42 16 16 Si 1.10 49.00 24.96 68.60 1.71 50.71 16 17 H -0.26 -10.44 6.44 99.48 0.64 -9.80 16 18 H -0.26 -11.60 7.07 99.48 0.70 -10.90 16 19 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 20 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 22 H 0.06 1.50 4.43 -2.39 -0.01 1.48 16 23 H 0.04 2.01 7.24 -2.39 -0.02 1.99 16 24 H 0.07 1.82 6.11 -2.39 -0.01 1.81 16 25 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 26 H 0.04 1.31 7.82 -2.39 -0.02 1.29 16 27 H 0.12 4.80 7.12 -2.91 -0.02 4.78 16 28 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 29 H 0.14 4.45 8.06 -2.91 -0.02 4.42 16 30 H 0.11 5.08 4.55 -2.91 -0.01 5.07 16 31 H 0.28 15.30 8.73 -92.71 -0.81 14.49 16 Total: -1.00 -63.22 255.66 4.32 -58.90 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 1.02 Total: 17.12 kcal Atomic # 6 Polarization: -47.28 SS G_CDS: 3.71 Total: -43.57 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.30 Total: -46.42 kcal Atomic # 8 Polarization: -34.32 SS G_CDS: -2.42 Total: -36.74 kcal Atomic # 14 Polarization: 49.00 SS G_CDS: 1.71 Total: 50.71 kcal Total: -63.22 4.32 -58.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214634671.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.648 kcal (2) G-P(sol) polarization free energy of solvation -63.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds