Wall clock time and date at job start Thu Apr 9 2020 14:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 115.54879 * 2 1 4 4 C 1.53069 * 117.53386 * 214.28130 * 2 1 3 5 5 C 1.53000 * 59.98584 * 252.53081 * 4 2 1 6 6 H 1.09002 * 117.49833 * 107.50105 * 5 4 2 7 7 C 1.50697 * 117.50034 * 252.49893 * 5 4 2 8 8 C 1.34514 * 125.79229 * 188.74437 * 7 5 4 9 9 C 1.41376 * 106.84440 * 179.97438 * 8 7 5 10 10 C 1.34520 * 106.84076 * 0.02562 * 9 8 7 11 11 C 1.50701 * 125.78767 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47258 * 25.00034 * 11 10 9 13 13 O 1.42903 * 109.46527 * 144.99459 * 11 10 9 14 14 C 1.50700 * 109.47198 * 264.99428 * 11 10 9 15 15 H 1.07995 * 119.99678 * 0.02562 * 14 11 10 16 16 C 1.37873 * 119.99639 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00556 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99591 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47229 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46755 * 120.00307 * 18 16 14 21 21 H 1.48496 * 109.47450 * 239.99967 * 18 16 14 22 22 O 1.34296 * 108.41528 * 359.73105 * 10 9 8 23 23 H 1.09000 * 109.47282 * 274.32976 * 1 2 3 24 24 H 1.09001 * 109.46806 * 34.33368 * 1 2 3 25 25 H 1.09002 * 109.46993 * 154.33198 * 1 2 3 26 26 H 1.09008 * 117.49334 * 145.04636 * 4 2 1 27 27 H 1.08999 * 117.51639 * 0.02562 * 4 2 1 28 28 H 1.08005 * 126.57677 * 0.04384 * 8 7 5 29 29 H 1.08007 * 126.58145 * 179.97438 * 9 8 7 30 30 H 0.96701 * 113.99803 * 60.00357 * 13 11 10 31 31 H 0.97000 * 120.00339 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1215 -0.7645 5 6 2.2364 -1.1207 0.7655 6 1 1.6112 -1.8582 1.2687 7 6 3.5287 -0.7803 1.4621 8 6 3.7631 -0.8891 2.7822 9 6 5.0951 -0.4670 2.9978 10 6 5.5948 -0.1249 1.7966 11 6 6.9882 0.3859 1.5349 12 1 7.6569 0.0371 2.3219 13 8 7.4446 -0.1016 0.2715 14 6 6.9759 1.8927 1.5173 15 1 6.0515 2.4270 1.6798 16 6 8.1446 2.5891 1.2937 17 7 9.2701 1.9384 1.0952 18 14 8.1291 4.4569 1.2711 19 1 6.7480 4.9435 1.5182 20 1 9.0322 4.9722 2.3315 21 1 8.5950 4.9399 -0.0535 22 8 4.6434 -0.3220 0.8696 23 1 -0.3634 0.0776 1.0247 24 1 -0.3633 0.8486 -0.5796 25 1 -0.3633 -0.9263 -0.4452 26 1 3.1730 -0.8755 -1.2673 27 1 1.6132 -1.8595 -1.2681 28 1 3.0677 -1.2339 3.5331 29 1 5.6120 -0.4262 3.9453 30 1 6.8957 0.1706 -0.4767 31 1 10.0923 2.4284 0.9375 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218187466.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:57 Heat of formation + Delta-G solvation = -22.810862 kcal Electronic energy + Delta-G solvation = -14816.984121 eV Core-core repulsion = 12258.641535 eV Total energy + Delta-G solvation = -2558.342586 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.85348 -37.59336 -35.58488 -32.38183 -32.16650 -30.06073 -28.36720 -26.31601 -23.49598 -21.48851 -21.02582 -20.57270 -19.24761 -17.17655 -16.64145 -15.23660 -15.09987 -14.68439 -14.36255 -13.62468 -13.37551 -13.11371 -12.96643 -12.29336 -12.14578 -11.87665 -11.62128 -11.43243 -11.36268 -11.05632 -10.97352 -10.42552 -10.23308 -9.98389 -9.51192 -9.12617 -8.72937 -8.50127 -7.39281 -6.11794 -4.32145 2.38495 3.22962 3.28989 3.32818 3.38818 3.57510 3.98516 4.33484 4.66191 4.88621 4.92716 5.14658 5.29435 5.51868 5.65272 5.68644 5.70006 5.80232 5.89080 5.97172 6.14080 6.19591 6.31405 6.52924 6.62794 6.88497 7.21364 7.35839 7.72354 7.93236 8.05388 8.69666 9.20235 9.43306 10.91160 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.033062 B = 0.007247 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.702878 B = 3862.953806 C = 4156.929157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.147 4.147 3 H 0.107 0.893 4 C -0.168 4.168 5 C -0.068 4.068 6 H 0.126 0.874 7 C -0.022 4.022 8 C -0.198 4.198 9 C -0.245 4.245 10 C 0.024 3.976 11 C 0.300 3.700 12 H 0.089 0.911 13 O -0.558 6.558 14 C -0.568 4.568 15 H 0.061 0.939 16 C 0.081 3.919 17 N -0.858 5.858 18 Si 0.897 3.103 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.281 1.281 22 O -0.170 6.170 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.056 0.944 26 H 0.102 0.898 27 H 0.098 0.902 28 H 0.136 0.864 29 H 0.141 0.859 30 H 0.354 0.646 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.424 -4.263 -1.023 14.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.166 4.166 3 H 0.125 0.875 4 C -0.205 4.205 5 C -0.086 4.086 6 H 0.144 0.856 7 C -0.071 4.071 8 C -0.217 4.217 9 C -0.264 4.264 10 C -0.027 4.027 11 C 0.242 3.758 12 H 0.106 0.894 13 O -0.360 6.360 14 C -0.606 4.606 15 H 0.079 0.921 16 C -0.126 4.126 17 N -0.493 5.493 18 Si 0.724 3.276 19 H -0.196 1.196 20 H -0.206 1.206 21 H -0.207 1.207 22 O -0.067 6.067 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.154 0.846 29 H 0.158 0.842 30 H 0.198 0.802 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -12.728 -4.479 -0.985 13.529 hybrid contribution -0.404 1.262 0.106 1.329 sum -13.132 -3.218 -0.879 13.549 Atomic orbital electron populations 1.21358 0.92566 1.01890 1.01888 1.22520 0.95040 0.95195 1.03799 0.87453 1.23168 1.03078 1.01117 0.93121 1.20403 0.92283 1.02208 0.93686 0.85650 1.21113 0.87855 1.06441 0.91698 1.21315 0.97485 1.07902 0.95046 1.21403 0.95739 1.10516 0.98786 1.24835 0.93097 0.97887 0.86923 1.18383 0.79505 0.92701 0.85192 0.89355 1.86557 1.56331 1.76629 1.16500 1.21534 0.95195 0.90457 1.53388 0.92100 1.25030 0.95139 0.98860 0.93594 1.70069 0.98932 1.35523 1.44813 0.86469 0.78351 0.84921 0.77859 1.19568 1.20629 1.20652 1.83910 1.19440 1.65267 1.38036 0.92136 0.92009 0.92541 0.88001 0.88392 0.84589 0.84151 0.80190 0.92640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.16 10.19 37.16 0.38 -0.78 16 2 C -0.15 -1.89 6.11 -90.58 -0.55 -2.44 16 3 H 0.11 1.57 8.14 -51.93 -0.42 1.14 16 4 C -0.17 -2.15 9.82 -26.70 -0.26 -2.42 16 5 C -0.07 -0.96 5.96 -91.77 -0.55 -1.51 16 6 H 0.13 1.47 8.14 -51.93 -0.42 1.05 16 7 C -0.02 -0.40 6.80 -35.63 -0.24 -0.65 16 8 C -0.20 -3.68 10.81 -39.71 -0.43 -4.11 16 9 C -0.25 -5.18 10.81 -39.70 -0.43 -5.61 16 10 C 0.02 0.56 6.14 -35.62 -0.22 0.34 16 11 C 0.30 7.88 3.29 -29.03 -0.10 7.78 16 12 H 0.09 2.43 8.14 -51.93 -0.42 2.01 16 13 O -0.56 -14.79 12.71 -40.20 -0.51 -15.30 16 14 C -0.57 -15.82 8.75 -34.44 -0.30 -16.12 16 15 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 16 C 0.08 2.24 5.40 -17.82 -0.10 2.14 16 17 N -0.86 -24.95 12.84 55.43 0.71 -24.24 16 18 Si 0.90 21.13 29.54 -169.99 -5.02 16.10 16 19 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 O -0.17 -3.73 10.22 0.76 0.01 -3.72 16 23 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.47 7.90 -51.93 -0.41 0.06 16 26 H 0.10 1.47 7.96 -51.92 -0.41 1.06 16 27 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 28 H 0.14 2.08 8.06 -52.48 -0.42 1.66 16 29 H 0.14 2.73 8.06 -52.48 -0.42 2.31 16 30 H 0.35 8.47 8.92 45.56 0.41 8.88 16 31 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 LS Contribution 276.40 15.07 4.17 4.17 Total: -1.00 -30.57 276.40 -6.78 -37.35 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -3.34 Total: 9.01 kcal Atomic # 6 Polarization: -20.56 SS G_CDS: -2.80 Total: -23.36 kcal Atomic # 7 Polarization: -24.95 SS G_CDS: 0.71 Total: -24.24 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: -0.50 Total: -19.02 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.57 -6.78 -37.35 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218187466.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.535 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds