Wall clock time and date at job start Thu Apr 9 2020 14:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 115.54879 * 2 1 4 4 C 1.53069 * 117.53386 * 214.28130 * 2 1 3 5 5 C 1.53000 * 59.98584 * 252.53081 * 4 2 1 6 6 H 1.09002 * 117.49833 * 107.50105 * 5 4 2 7 7 C 1.50697 * 117.50034 * 252.49893 * 5 4 2 8 8 C 1.34514 * 125.79229 * 188.74437 * 7 5 4 9 9 C 1.41376 * 106.84440 * 179.97438 * 8 7 5 10 10 C 1.34520 * 106.84076 * 0.02562 * 9 8 7 11 11 C 1.50701 * 125.78767 * 180.02562 * 10 9 8 12 12 H 1.09000 * 109.47258 * 25.00034 * 11 10 9 13 13 O 1.42903 * 109.46527 * 144.99459 * 11 10 9 14 14 C 1.50700 * 109.47198 * 264.99428 * 11 10 9 15 15 H 1.07995 * 119.99678 * 0.02562 * 14 11 10 16 16 C 1.37873 * 119.99639 * 180.02562 * 14 11 10 17 17 N 1.31510 * 120.00556 * 0.02562 * 16 14 11 18 18 Si 1.86803 * 119.99591 * 179.97438 * 16 14 11 19 19 H 1.48501 * 109.47229 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46755 * 120.00307 * 18 16 14 21 21 H 1.48496 * 109.47450 * 239.99967 * 18 16 14 22 22 O 1.34296 * 108.41528 * 359.73105 * 10 9 8 23 23 H 1.09000 * 109.47282 * 274.32976 * 1 2 3 24 24 H 1.09001 * 109.46806 * 34.33368 * 1 2 3 25 25 H 1.09002 * 109.46993 * 154.33198 * 1 2 3 26 26 H 1.09008 * 117.49334 * 145.04636 * 4 2 1 27 27 H 1.08999 * 117.51639 * 0.02562 * 4 2 1 28 28 H 1.08005 * 126.57677 * 0.04384 * 8 7 5 29 29 H 1.08007 * 126.58145 * 179.97438 * 9 8 7 30 30 H 0.96701 * 113.99803 * 60.00357 * 13 11 10 31 31 H 0.97000 * 120.00339 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0001 0.9834 0.0000 4 6 2.2376 -1.1215 -0.7645 5 6 2.2364 -1.1207 0.7655 6 1 1.6112 -1.8582 1.2687 7 6 3.5287 -0.7803 1.4621 8 6 3.7631 -0.8891 2.7822 9 6 5.0951 -0.4670 2.9978 10 6 5.5948 -0.1249 1.7966 11 6 6.9882 0.3859 1.5349 12 1 7.6569 0.0371 2.3219 13 8 7.4446 -0.1016 0.2715 14 6 6.9759 1.8927 1.5173 15 1 6.0515 2.4270 1.6798 16 6 8.1446 2.5891 1.2937 17 7 9.2701 1.9384 1.0952 18 14 8.1291 4.4569 1.2711 19 1 6.7480 4.9435 1.5182 20 1 9.0322 4.9722 2.3315 21 1 8.5950 4.9399 -0.0535 22 8 4.6434 -0.3220 0.8696 23 1 -0.3634 0.0776 1.0247 24 1 -0.3633 0.8486 -0.5796 25 1 -0.3633 -0.9263 -0.4452 26 1 3.1730 -0.8755 -1.2673 27 1 1.6132 -1.8595 -1.2681 28 1 3.0677 -1.2339 3.5331 29 1 5.6120 -0.4262 3.9453 30 1 6.8957 0.1706 -0.4767 31 1 10.0923 2.4284 0.9375 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218187466.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:57 Heat of formation + Delta-G solvation = -42.438594 kcal Electronic energy + Delta-G solvation = -14817.835243 eV Core-core repulsion = 12258.641535 eV Total energy + Delta-G solvation = -2559.193709 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.46199 -38.68887 -37.61155 -34.42668 -33.89240 -31.61535 -29.58425 -28.05765 -25.26413 -22.95014 -22.61639 -21.62598 -20.78005 -19.28708 -18.20271 -16.84222 -16.77817 -16.71422 -15.60775 -15.26724 -15.09751 -14.50349 -14.01146 -13.87681 -13.64588 -13.45879 -13.07947 -13.04260 -12.83862 -12.76892 -12.35356 -12.15691 -11.67327 -11.43195 -10.99809 -10.88507 -10.69342 -10.52905 -9.00940 -8.23048 -6.53500 0.82951 1.37246 1.38010 1.51177 1.72798 2.03890 2.35357 2.90415 3.00593 3.52308 3.84136 3.92507 4.00923 4.18855 4.23362 4.37718 4.41530 4.72680 4.89501 4.90498 4.97356 5.00607 5.13352 5.19960 5.26826 5.35317 5.42721 5.54211 5.71444 5.85121 6.36617 6.53762 7.14061 7.29875 8.79336 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.033062 B = 0.007247 C = 0.006734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.702878 B = 3862.953806 C = 4156.929157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.141 4.141 3 H 0.081 0.919 4 C -0.164 4.164 5 C -0.081 4.081 6 H 0.160 0.840 7 C -0.017 4.017 8 C -0.205 4.205 9 C -0.240 4.240 10 C -0.020 4.020 11 C 0.302 3.698 12 H 0.064 0.936 13 O -0.571 6.571 14 C -0.583 4.583 15 H 0.052 0.948 16 C 0.032 3.968 17 N -0.894 5.894 18 Si 0.968 3.032 19 H -0.269 1.269 20 H -0.271 1.271 21 H -0.273 1.273 22 O -0.187 6.187 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.131 0.869 28 H 0.174 0.826 29 H 0.150 0.850 30 H 0.361 0.639 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.886 -4.203 -0.974 16.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.160 4.160 3 H 0.099 0.901 4 C -0.201 4.201 5 C -0.099 4.099 6 H 0.177 0.823 7 C -0.066 4.066 8 C -0.224 4.224 9 C -0.259 4.259 10 C -0.071 4.071 11 C 0.244 3.756 12 H 0.081 0.919 13 O -0.375 6.375 14 C -0.621 4.621 15 H 0.070 0.930 16 C -0.171 4.171 17 N -0.530 5.530 18 Si 0.792 3.208 19 H -0.193 1.193 20 H -0.196 1.196 21 H -0.198 1.198 22 O -0.085 6.085 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.149 0.851 28 H 0.192 0.808 29 H 0.168 0.832 30 H 0.206 0.794 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -15.195 -4.422 -0.932 15.853 hybrid contribution 0.296 1.176 0.073 1.215 sum -14.899 -3.247 -0.858 15.273 Atomic orbital electron populations 1.21371 0.89594 1.03324 1.02821 1.22563 0.97107 0.93607 1.02684 0.90091 1.23247 1.02664 1.01941 0.92224 1.20758 0.90630 1.03972 0.94523 0.82290 1.22129 0.88071 1.03934 0.92472 1.21691 0.96816 1.07989 0.95923 1.21725 0.97074 1.08862 0.98288 1.24228 0.92940 1.01688 0.88205 1.18020 0.81147 0.92158 0.84233 0.91862 1.86489 1.57101 1.76816 1.17118 1.21736 0.95059 0.91570 1.53704 0.93012 1.25890 0.94532 1.03872 0.92852 1.70177 0.99625 1.37620 1.45567 0.85376 0.78438 0.78692 0.78299 1.19340 1.19564 1.19831 1.83868 1.20310 1.65926 1.38382 0.91328 0.91284 0.90560 0.90445 0.85060 0.80827 0.83237 0.79376 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.78 10.19 71.98 0.73 -1.05 16 2 C -0.14 -3.31 6.11 -10.77 -0.07 -3.37 16 3 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 4 C -0.16 -3.85 9.82 30.62 0.30 -3.55 16 5 C -0.08 -2.08 5.96 -11.54 -0.07 -2.15 16 6 H 0.16 3.02 8.14 -2.39 -0.02 3.00 16 7 C -0.02 -0.61 6.80 24.83 0.17 -0.44 16 8 C -0.21 -7.27 10.81 22.19 0.24 -7.03 16 9 C -0.24 -10.17 10.81 22.19 0.24 -9.93 16 10 C -0.02 -0.96 6.14 24.83 0.15 -0.81 16 11 C 0.30 16.59 3.29 29.10 0.10 16.68 16 12 H 0.06 3.70 8.14 -2.39 -0.02 3.68 16 13 O -0.57 -31.68 12.71 -144.23 -1.83 -33.51 16 14 C -0.58 -33.48 8.75 25.60 0.22 -33.26 16 15 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 16 C 0.03 1.81 5.40 84.65 0.46 2.27 16 17 N -0.89 -53.08 12.84 21.44 0.28 -52.81 16 18 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 19 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 22 O -0.19 -8.38 10.22 2.34 0.02 -8.35 16 23 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 0.92 7.90 -2.39 -0.02 0.90 16 26 H 0.08 2.21 7.96 -2.38 -0.02 2.19 16 27 H 0.13 2.20 8.05 -2.39 -0.02 2.18 16 28 H 0.17 4.70 8.06 -2.91 -0.02 4.67 16 29 H 0.15 5.85 8.06 -2.91 -0.02 5.83 16 30 H 0.36 18.18 8.92 -74.06 -0.66 17.52 16 31 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -67.19 276.40 3.44 -63.76 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.47 Total: 27.79 kcal Atomic # 6 Polarization: -45.12 SS G_CDS: 2.48 Total: -42.64 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.28 Total: -52.81 kcal Atomic # 8 Polarization: -40.05 SS G_CDS: -1.81 Total: -41.86 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -67.19 3.44 -63.76 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218187466.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.319 kcal (2) G-P(sol) polarization free energy of solvation -67.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds