Wall clock time and date at job start Thu Apr 9 2020 14:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46783 * 2 1 4 4 O 1.42907 * 109.46810 * 119.99583 * 2 1 3 5 5 C 1.35941 * 116.99846 * 84.15325 * 4 2 1 6 6 C 1.38569 * 120.08770 * 354.67140 * 5 4 2 7 7 C 1.38231 * 120.01225 * 180.02562 * 6 5 4 8 8 C 1.38324 * 120.18720 * 359.97438 * 7 6 5 9 9 C 1.38161 * 120.17048 * 359.97438 * 8 7 6 10 10 C 1.38760 * 119.98465 * 0.03093 * 9 8 7 11 11 O 1.35793 * 120.09352 * 179.97438 * 10 9 8 12 12 C 1.34813 * 116.99945 * 6.03619 * 11 10 9 13 13 H 1.08003 * 119.99911 * 5.39106 * 12 11 10 14 14 C 1.38639 * 120.00163 * 185.39172 * 12 11 10 15 15 N 1.31569 * 120.00022 * 179.97438 * 14 12 11 16 16 Si 1.86804 * 119.99685 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47440 * 89.99926 * 16 14 12 18 18 H 1.48503 * 109.46949 * 209.99609 * 16 14 12 19 19 H 1.48499 * 109.47223 * 329.99486 * 16 14 12 20 20 H 1.08994 * 109.46934 * 60.00705 * 1 2 3 21 21 H 1.09005 * 109.46578 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47135 * 300.00046 * 1 2 3 23 23 H 1.08995 * 109.47405 * 239.99482 * 2 1 3 24 24 H 1.09006 * 109.46811 * 180.02562 * 3 2 1 25 25 H 1.08994 * 109.46810 * 299.99371 * 3 2 1 26 26 H 1.08996 * 109.47323 * 60.00069 * 3 2 1 27 27 H 1.07998 * 119.98992 * 0.02867 * 6 5 4 28 28 H 1.07996 * 119.90973 * 180.02562 * 7 6 5 29 29 H 1.07996 * 119.91778 * 179.72283 * 8 7 6 30 30 H 1.07992 * 120.00816 * 179.97438 * 9 8 7 31 31 H 0.96999 * 119.99858 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6736 1.1669 5 6 2.0957 -2.0286 1.1040 6 6 1.6304 -2.7044 -0.0126 7 6 1.7215 -4.0823 -0.0747 8 6 2.2771 -4.7906 0.9756 9 6 2.7444 -4.1245 2.0921 10 6 2.6564 -2.7415 2.1620 11 8 3.1145 -2.0845 3.2586 12 6 3.7561 -2.8197 4.1888 13 1 3.9627 -3.8636 4.0039 14 6 4.1508 -2.2358 5.3827 15 7 4.7766 -2.9535 6.2907 16 14 3.7929 -0.4305 5.7026 17 1 2.4693 -0.2977 6.3626 18 1 4.8451 0.1338 6.5856 19 1 3.7798 0.3075 4.4141 20 1 -0.3633 0.5137 -0.8900 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8899 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9562 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.1964 -2.1544 -0.8346 28 1 1.3587 -4.6073 -0.9459 29 1 2.3420 -5.8674 0.9244 30 1 3.1773 -4.6801 2.9107 31 1 5.0524 -2.5450 7.1261 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238160452.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:10 Heat of formation + Delta-G solvation = -43.067041 kcal Electronic energy + Delta-G solvation = -15091.125497 eV Core-core repulsion = 12531.904537 eV Total energy + Delta-G solvation = -2559.220960 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.80200 -37.96554 -36.11947 -32.87880 -32.27897 -29.57375 -28.64869 -27.13392 -25.18993 -22.76023 -21.35064 -20.40828 -18.08863 -17.79258 -16.45449 -15.26616 -15.09603 -14.45261 -14.17866 -14.10500 -13.58816 -13.45118 -12.78290 -12.48358 -12.24819 -12.11957 -12.05344 -11.77678 -11.33392 -11.09325 -10.88819 -10.76408 -10.34857 -10.27050 -10.15629 -9.43304 -8.82549 -7.94659 -7.07911 -6.36987 -4.00901 2.07578 2.25016 3.27720 3.31846 3.51191 3.73836 4.31510 4.48163 4.81471 4.95637 5.07800 5.13822 5.23247 5.49722 5.59585 5.65049 5.74610 5.83313 5.87609 5.91365 6.13805 6.28325 6.28989 6.36008 6.55272 6.93884 7.06303 7.29073 7.53127 7.69918 7.99217 8.18534 8.98968 9.63205 10.70550 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.023852 B = 0.010766 C = 0.007703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.617237 B = 2600.131874 C = 3633.979342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.076 3.924 3 C -0.147 4.147 4 O -0.301 6.301 5 C 0.061 3.939 6 C -0.172 4.172 7 C -0.172 4.172 8 C -0.107 4.107 9 C -0.197 4.197 10 C 0.136 3.864 11 O -0.206 6.206 12 C -0.387 4.387 13 H 0.105 0.895 14 C 0.064 3.936 15 N -0.881 5.881 16 Si 0.903 3.097 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.255 1.255 20 H 0.064 0.936 21 H 0.063 0.937 22 H 0.065 0.935 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.121 0.879 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.139 0.861 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.457 4.109 -11.996 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.019 3.981 3 C -0.204 4.204 4 O -0.216 6.216 5 C 0.016 3.984 6 C -0.191 4.191 7 C -0.191 4.191 8 C -0.125 4.125 9 C -0.216 4.216 10 C 0.084 3.916 11 O -0.111 6.111 12 C -0.462 4.462 13 H 0.123 0.877 14 C -0.139 4.139 15 N -0.519 5.519 16 Si 0.728 3.272 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.179 1.179 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.084 0.916 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.089 0.911 26 H 0.084 0.916 27 H 0.139 0.861 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.157 0.843 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.306 4.485 -11.538 13.893 hybrid contribution -0.176 0.426 0.097 0.471 sum -6.482 4.911 -11.442 14.037 Atomic orbital electron populations 1.22382 0.95824 1.02971 1.02448 1.22278 0.93871 0.93569 0.88338 1.21819 1.02170 0.94033 1.02406 1.86224 1.81828 1.16254 1.37269 1.18182 1.03547 0.82234 0.94436 1.20779 1.05724 0.95260 0.97348 1.20447 1.05934 0.93218 0.99525 1.20736 0.99237 0.98880 0.93682 1.21101 1.07128 0.92876 1.00525 1.18437 0.95421 0.90142 0.87574 1.83672 1.64801 1.36385 1.26290 1.20776 1.33703 0.96338 0.95424 0.87746 1.24436 0.95630 0.99980 0.93897 1.69657 1.37967 1.36833 1.07426 0.86201 0.78059 0.83667 0.79255 1.19972 1.20911 1.17858 0.91713 0.91784 0.91633 0.91475 0.91724 0.91139 0.91627 0.86147 0.87279 0.87065 0.84348 0.91124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.27 9.15 37.16 0.34 -1.93 16 2 C 0.08 1.13 2.85 -26.73 -0.08 1.05 16 3 C -0.15 -1.86 9.56 37.16 0.36 -1.50 16 4 O -0.30 -6.20 9.59 -33.99 -0.33 -6.53 16 5 C 0.06 1.30 6.61 -39.05 -0.26 1.04 16 6 C -0.17 -3.05 8.21 -39.46 -0.32 -3.38 16 7 C -0.17 -2.94 10.04 -39.55 -0.40 -3.34 16 8 C -0.11 -1.98 10.04 -39.58 -0.40 -2.37 16 9 C -0.20 -4.36 9.13 -39.42 -0.36 -4.72 16 10 C 0.14 3.32 6.66 -38.98 -0.26 3.06 16 11 O -0.21 -5.72 8.37 -14.47 -0.12 -5.84 16 12 C -0.39 -11.20 9.90 30.88 0.31 -10.90 16 13 H 0.11 3.05 5.54 -52.48 -0.29 2.76 16 14 C 0.06 1.83 5.49 -17.52 -0.10 1.74 16 15 N -0.88 -25.89 13.96 55.48 0.77 -25.11 16 16 Si 0.90 22.52 28.62 -169.99 -4.86 17.66 16 17 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.25 -6.49 7.11 56.52 0.40 -6.09 16 20 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.06 0.85 6.83 -51.93 -0.35 0.49 16 22 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 23 H 0.07 0.91 6.36 -51.93 -0.33 0.58 16 24 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 27 H 0.12 1.77 5.40 -52.49 -0.28 1.48 16 28 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 30 H 0.14 3.17 5.72 -52.49 -0.30 2.87 16 31 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 264.48 15.07 3.99 3.99 Total: -1.00 -30.90 264.48 -5.37 -36.27 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -3.65 Total: 0.81 kcal Atomic # 6 Polarization: -20.07 SS G_CDS: -1.17 Total: -21.24 kcal Atomic # 7 Polarization: -25.89 SS G_CDS: 0.77 Total: -25.11 kcal Atomic # 8 Polarization: -11.92 SS G_CDS: -0.45 Total: -12.37 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.86 Total: 17.66 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.90 -5.37 -36.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238160452.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.797 kcal (2) G-P(sol) polarization free energy of solvation -30.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.270 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds