Wall clock time and date at job start Thu Apr 9 2020 14:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35908 * 116.99582 * 2 1 4 4 C 1.38734 * 120.05464 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94469 * 179.97438 * 4 3 2 6 6 C 1.38268 * 120.05103 * 0.02562 * 5 4 3 7 7 C 1.50703 * 119.93866 * 179.97438 * 6 5 4 8 8 H 1.08998 * 109.47500 * 0.02562 * 7 6 5 9 9 C 1.50697 * 109.47177 * 120.00102 * 7 6 5 10 10 H 1.08002 * 119.99892 * 0.02562 * 9 7 6 11 11 C 1.37873 * 120.00259 * 179.97438 * 9 7 6 12 12 N 1.31512 * 119.99973 * 359.97438 * 11 9 7 13 13 Si 1.86805 * 120.00160 * 180.02562 * 11 9 7 14 14 H 1.48495 * 109.47048 * 59.99662 * 13 11 9 15 15 H 1.48501 * 109.46850 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46615 * 299.99690 * 13 11 9 17 17 C 1.52999 * 109.47004 * 240.00073 * 7 6 5 18 18 O 1.42903 * 109.47256 * 65.00527 * 17 7 6 19 19 C 1.38258 * 120.11706 * 0.27640 * 6 5 4 20 20 C 1.38152 * 120.05285 * 359.44856 * 19 6 5 21 21 H 1.09005 * 109.46503 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47132 * 299.99612 * 1 2 3 23 23 H 1.08990 * 109.47771 * 59.99763 * 1 2 3 24 24 H 1.08004 * 120.02717 * 359.96559 * 4 3 2 25 25 H 1.07997 * 119.97006 * 180.02562 * 5 4 3 26 26 H 0.96999 * 120.00393 * 179.97438 * 12 11 9 27 27 H 1.08997 * 109.47286 * 305.00087 * 17 7 6 28 28 H 1.09008 * 109.47201 * 184.99867 * 17 7 6 29 29 H 0.96700 * 114.00311 * 180.02562 * 18 17 7 30 30 H 1.08005 * 119.97307 * 179.70111 * 19 6 5 31 31 H 1.08004 * 120.02704 * 180.28010 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 3.4313 1.2850 0.0005 5 6 4.0560 2.5171 0.0000 6 6 3.3017 3.6759 -0.0005 7 6 3.9858 5.0187 -0.0005 8 1 5.0664 4.8760 -0.0005 9 6 3.5813 5.7886 -1.2313 10 1 2.8970 5.3496 -1.9422 11 6 4.0841 7.0537 -1.4493 12 7 4.9163 7.5889 -0.5829 13 14 3.5821 8.0083 -2.9746 14 1 2.1099 8.2023 -2.9749 15 1 4.2564 9.3314 -2.9746 16 1 3.9818 7.2496 -4.1870 17 6 3.5742 5.8008 1.2484 18 8 4.0598 5.1292 2.4126 19 6 1.9209 3.6049 0.0052 20 6 1.2914 2.3751 0.0000 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8898 24 1 4.0209 0.3801 0.0015 25 1 5.1344 2.5752 0.0000 26 1 5.2703 8.4788 -0.7364 27 1 2.4872 5.8668 1.2939 28 1 3.9977 6.8043 1.2047 29 1 3.8349 5.5698 3.2434 30 1 1.3340 4.5115 0.0097 31 1 0.2127 2.3201 0.0000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238345628.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:11 Heat of formation + Delta-G solvation = -91.776318 kcal Electronic energy + Delta-G solvation = -14921.329394 eV Core-core repulsion = 12359.996241 eV Total energy + Delta-G solvation = -2561.333153 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.96468 -38.94345 -37.28206 -35.27399 -32.72228 -31.84796 -29.40693 -27.69539 -26.57030 -24.07470 -23.08945 -21.32419 -18.98040 -18.66204 -17.69557 -17.14059 -16.67502 -16.52886 -15.88743 -15.40294 -15.06351 -14.46006 -14.35421 -14.06142 -13.95806 -13.48481 -13.05338 -12.77338 -12.69921 -12.41789 -12.12044 -11.83987 -11.57935 -11.36771 -11.24334 -10.83798 -10.30932 -9.80596 -8.82141 -8.14575 -6.31539 0.53172 0.68473 1.42952 1.44067 1.52287 2.40459 2.48154 2.98591 3.10870 3.92158 3.99558 4.05740 4.32059 4.41687 4.44970 4.61162 4.64662 4.70358 4.77089 4.86233 5.04956 5.18614 5.40226 5.46063 5.51401 5.61363 5.84608 5.95600 6.09603 6.28184 6.58613 6.77674 7.14373 7.37330 8.88700 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.032791 B = 0.007884 C = 0.007010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.677316 B = 3550.815089 C = 3993.136665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.335 6.335 3 C 0.098 3.902 4 C -0.155 4.155 5 C -0.101 4.101 6 C -0.084 4.084 7 C 0.085 3.915 8 H 0.002 0.998 9 C -0.526 4.526 10 H 0.059 0.941 11 C 0.016 3.984 12 N -0.916 5.916 13 Si 0.960 3.040 14 H -0.267 1.267 15 H -0.282 1.282 16 H -0.274 1.274 17 C 0.090 3.910 18 O -0.595 6.595 19 C -0.088 4.088 20 C -0.202 4.202 21 H 0.123 0.877 22 H 0.061 0.939 23 H 0.059 0.941 24 H 0.141 0.859 25 H 0.119 0.881 26 H 0.265 0.735 27 H 0.024 0.976 28 H 0.057 0.943 29 H 0.378 0.622 30 H 0.118 0.882 31 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.522 -9.123 2.056 12.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.053 3.947 4 C -0.173 4.173 5 C -0.119 4.119 6 C -0.084 4.084 7 C 0.066 3.934 8 H 0.020 0.980 9 C -0.564 4.564 10 H 0.077 0.923 11 C -0.183 4.183 12 N -0.554 5.554 13 Si 0.785 3.215 14 H -0.191 1.191 15 H -0.207 1.207 16 H -0.199 1.199 17 C 0.013 3.987 18 O -0.402 6.402 19 C -0.106 4.106 20 C -0.220 4.220 21 H 0.141 0.859 22 H 0.079 0.921 23 H 0.078 0.922 24 H 0.159 0.841 25 H 0.137 0.863 26 H 0.074 0.926 27 H 0.042 0.958 28 H 0.075 0.925 29 H 0.225 0.775 30 H 0.136 0.864 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -8.116 -9.565 1.632 12.650 hybrid contribution -0.271 1.413 -0.265 1.463 sum -8.387 -8.152 1.366 11.775 Atomic orbital electron populations 1.23303 0.76822 1.05428 1.01985 1.85997 1.23210 1.26396 1.89300 1.18956 0.92292 0.84492 0.98945 1.20485 0.91994 0.98103 1.06757 1.20972 0.99778 0.91593 0.99534 1.20233 0.94363 0.95759 0.98047 1.17647 0.94100 0.89083 0.92566 0.98026 1.21282 1.28248 1.00707 1.06123 0.92322 1.25805 0.94572 0.98431 0.99506 1.69998 1.31819 1.16706 1.36917 0.85580 0.78810 0.77576 0.79571 1.19140 1.20688 1.19884 1.22362 0.95082 0.97103 0.84158 1.86443 1.81286 1.55278 1.17158 1.20839 0.93987 0.97338 0.98412 1.21361 1.00715 0.91528 1.08446 0.85929 0.92078 0.92207 0.84124 0.86288 0.92556 0.95770 0.92504 0.77484 0.86381 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.33 -9.71 10.50 -92.52 -0.97 -10.68 16 3 C 0.10 3.34 6.69 22.51 0.15 3.49 16 4 C -0.15 -5.60 9.99 22.37 0.22 -5.37 16 5 C -0.10 -4.21 9.66 22.25 0.22 -3.99 16 6 C -0.08 -3.84 4.51 -19.85 -0.09 -3.93 16 7 C 0.08 4.44 2.19 -12.29 -0.03 4.41 16 8 H 0.00 0.09 7.87 -2.39 -0.02 0.07 16 9 C -0.53 -28.83 8.25 25.60 0.21 -28.62 16 10 H 0.06 3.18 7.61 -2.91 -0.02 3.15 16 11 C 0.02 0.88 5.29 84.65 0.45 1.33 16 12 N -0.92 -51.98 11.29 21.45 0.24 -51.73 16 13 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 14 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 15 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 17 C 0.09 4.43 6.16 71.98 0.44 4.87 16 18 O -0.60 -26.37 13.41 -148.98 -2.00 -28.37 16 19 C -0.09 -3.57 8.65 22.25 0.19 -3.38 16 20 C -0.20 -6.86 9.04 22.37 0.20 -6.66 16 21 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 22 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 23 H 0.06 1.06 7.66 -2.39 -0.02 1.04 16 24 H 0.14 4.34 8.06 -2.91 -0.02 4.32 16 25 H 0.12 4.86 7.94 -2.91 -0.02 4.83 16 26 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 27 H 0.02 1.12 7.20 -2.39 -0.02 1.11 16 28 H 0.06 3.06 5.95 -2.38 -0.01 3.05 16 29 H 0.38 12.47 9.12 -74.06 -0.68 11.80 16 30 H 0.12 4.77 7.53 -2.91 -0.02 4.74 16 31 H 0.15 3.96 6.30 -2.91 -0.02 3.94 16 Total: -1.00 -64.63 265.64 2.84 -61.79 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.46 Total: 20.71 kcal Atomic # 6 Polarization: -39.46 SS G_CDS: 3.08 Total: -36.37 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.24 Total: -51.73 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: -2.97 Total: -39.05 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -64.63 2.84 -61.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238345628.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.990 kcal (2) G-P(sol) polarization free energy of solvation -64.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds