Wall clock time and date at job start Thu Apr 9 2020 14:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35901 * 117.00105 * 2 1 4 4 C 1.38728 * 120.05634 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.94428 * 179.97438 * 4 3 2 6 6 C 1.38261 * 120.05362 * 0.02562 * 5 4 3 7 7 C 1.50705 * 119.94303 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.46937 * 0.02562 * 7 6 5 9 9 C 1.50699 * 109.47299 * 240.00061 * 7 6 5 10 10 H 1.07999 * 119.99975 * 295.23341 * 9 7 6 11 11 C 1.37882 * 119.99761 * 115.23799 * 9 7 6 12 12 N 1.31511 * 119.99602 * 173.42275 * 11 9 7 13 13 Si 1.86799 * 120.00179 * 353.42600 * 11 9 7 14 14 H 1.48496 * 109.46952 * 85.88888 * 13 11 9 15 15 H 1.48501 * 109.47234 * 205.89391 * 13 11 9 16 16 H 1.48501 * 109.47036 * 325.89199 * 13 11 9 17 17 C 1.52997 * 109.46946 * 119.99892 * 7 6 5 18 18 O 1.42897 * 109.47407 * 184.97488 * 17 7 6 19 19 C 1.38267 * 120.11544 * 0.02562 * 6 5 4 20 20 C 1.38142 * 120.05195 * 359.97438 * 19 6 5 21 21 H 1.09004 * 109.47276 * 300.00048 * 1 2 3 22 22 H 1.09002 * 109.47263 * 60.00142 * 1 2 3 23 23 H 1.09001 * 109.47167 * 180.02562 * 1 2 3 24 24 H 1.08003 * 120.02544 * 359.95667 * 4 3 2 25 25 H 1.07998 * 119.96951 * 179.72396 * 5 4 3 26 26 H 0.96995 * 119.99713 * 179.97438 * 12 11 9 27 27 H 1.09002 * 109.47936 * 304.97874 * 17 7 6 28 28 H 1.09007 * 109.47302 * 64.98027 * 17 7 6 29 29 H 0.96696 * 114.00577 * 184.89256 * 18 17 7 30 30 H 1.08000 * 119.97095 * 180.02562 * 19 6 5 31 31 H 1.08001 * 120.02551 * 180.02562 * 20 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3019 3.6757 -0.0005 7 6 3.9861 5.0185 -0.0005 8 1 5.0666 4.8757 -0.0005 9 6 3.5807 5.7889 1.2296 10 1 2.5529 6.0927 1.3621 11 6 4.5221 6.1059 2.1858 12 7 4.1988 6.8868 3.1934 13 14 6.2568 5.4262 2.0502 14 1 7.0711 6.3169 1.1848 15 1 6.8678 5.3554 3.4018 16 1 6.2104 4.0660 1.4560 17 6 3.5755 5.8001 -1.2501 18 8 4.3114 7.0235 -1.3100 19 6 1.9211 3.6048 0.0000 20 6 1.2915 2.3751 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 4.0208 0.3799 0.0017 25 1 5.1345 2.5750 0.0049 26 1 4.8609 7.1095 3.8662 27 1 3.7883 5.2042 -2.1377 28 1 2.5086 6.0196 -1.2071 29 1 4.0490 7.6052 -2.0365 30 1 1.3342 4.5114 -0.0008 31 1 0.2129 2.3202 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238399328.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:15 Heat of formation + Delta-G solvation = -91.425525 kcal Electronic energy + Delta-G solvation = -14942.724597 eV Core-core repulsion = 12381.406655 eV Total energy + Delta-G solvation = -2561.317941 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.00464 -38.98082 -37.42123 -35.06512 -33.18466 -31.90846 -29.57155 -27.75015 -26.69813 -24.00040 -23.06525 -21.19051 -19.12965 -19.02197 -18.20500 -16.89721 -16.58962 -16.52647 -15.78890 -15.42715 -15.15516 -14.86499 -14.48992 -14.25458 -14.01837 -13.50455 -13.20028 -12.90870 -12.71239 -12.29843 -12.14185 -11.78127 -11.77340 -11.45044 -11.19650 -10.68889 -10.56787 -9.84467 -8.86995 -8.26341 -6.26274 0.49297 0.61928 1.34266 1.37713 1.44284 2.37667 2.46446 2.90582 3.13711 3.65801 3.95523 4.04173 4.33675 4.43138 4.44251 4.50480 4.51953 4.62993 4.67617 4.76435 4.86472 4.94391 5.08184 5.25544 5.41737 5.58149 5.64247 5.89860 5.93713 6.30937 6.55329 6.73690 7.18713 7.37211 8.90478 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.031155 B = 0.008589 C = 0.007965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.511907 B = 3259.161213 C = 3514.347566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.334 6.334 3 C 0.100 3.900 4 C -0.154 4.154 5 C -0.103 4.103 6 C -0.094 4.094 7 C 0.041 3.959 8 H 0.042 0.958 9 C -0.486 4.486 10 H 0.036 0.964 11 C 0.014 3.986 12 N -0.950 5.950 13 Si 0.935 3.065 14 H -0.273 1.273 15 H -0.291 1.291 16 H -0.242 1.242 17 C 0.097 3.903 18 O -0.585 6.585 19 C -0.082 4.082 20 C -0.202 4.202 21 H 0.056 0.944 22 H 0.064 0.936 23 H 0.122 0.878 24 H 0.143 0.857 25 H 0.126 0.874 26 H 0.263 0.737 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.385 0.615 30 H 0.116 0.884 31 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.993 -11.735 -9.927 16.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.056 3.944 4 C -0.172 4.172 5 C -0.121 4.121 6 C -0.094 4.094 7 C 0.022 3.978 8 H 0.060 0.940 9 C -0.524 4.524 10 H 0.055 0.945 11 C -0.183 4.183 12 N -0.590 5.590 13 Si 0.760 3.240 14 H -0.198 1.198 15 H -0.217 1.217 16 H -0.165 1.165 17 C 0.020 3.980 18 O -0.391 6.391 19 C -0.100 4.100 20 C -0.220 4.220 21 H 0.075 0.925 22 H 0.082 0.918 23 H 0.140 0.860 24 H 0.161 0.839 25 H 0.144 0.856 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.057 0.943 29 H 0.232 0.768 30 H 0.134 0.866 31 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.570 -12.112 -9.246 15.908 hybrid contribution 0.173 0.696 0.070 0.720 sum -4.397 -11.416 -9.176 15.292 Atomic orbital electron populations 1.23308 0.76808 1.05444 1.01999 1.86002 1.23199 1.26428 1.89178 1.19012 0.92427 0.84481 0.98527 1.20510 0.91878 0.98300 1.06532 1.21020 0.99985 0.91379 0.99704 1.20195 0.94430 0.95280 0.99525 1.18218 0.95988 0.89714 0.93891 0.94030 1.20954 0.95348 1.32640 1.03435 0.94542 1.25861 1.02732 0.94743 0.94960 1.70040 1.36511 1.37849 1.14648 0.85916 0.80364 0.80686 0.77022 1.19839 1.21707 1.16545 1.22205 0.94213 0.84983 0.96646 1.86575 1.63918 1.32428 1.56197 1.20818 0.94055 0.97293 0.97816 1.21373 1.00792 0.91599 1.08281 0.92491 0.91767 0.85965 0.83914 0.85588 0.92822 0.93378 0.94332 0.76784 0.86565 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.45 16 2 O -0.33 -9.15 10.50 -92.43 -0.97 -10.12 16 3 C 0.10 3.20 6.69 22.51 0.15 3.35 16 4 C -0.15 -5.07 9.99 22.37 0.22 -4.85 16 5 C -0.10 -3.84 9.66 22.25 0.22 -3.63 16 6 C -0.09 -3.89 4.77 -19.85 -0.09 -3.98 16 7 C 0.04 1.92 2.12 -12.29 -0.03 1.89 16 8 H 0.04 1.99 4.58 -2.39 -0.01 1.98 16 9 C -0.49 -27.89 8.24 25.60 0.21 -27.68 16 10 H 0.04 2.29 8.06 -2.91 -0.02 2.27 16 11 C 0.01 0.82 5.47 84.66 0.46 1.28 16 12 N -0.95 -60.90 13.96 21.45 0.30 -60.60 16 13 Si 0.93 46.28 26.93 68.60 1.85 48.13 16 14 H -0.27 -13.37 7.11 99.48 0.71 -12.66 16 15 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 16 H -0.24 -10.88 6.60 99.48 0.66 -10.22 16 17 C 0.10 3.89 6.15 71.98 0.44 4.34 16 18 O -0.58 -24.13 13.41 -148.98 -2.00 -26.12 16 19 C -0.08 -3.10 8.86 22.25 0.20 -2.90 16 20 C -0.20 -6.45 9.04 22.37 0.20 -6.25 16 21 H 0.06 1.00 7.66 -2.38 -0.02 0.98 16 22 H 0.06 1.02 7.66 -2.39 -0.02 1.00 16 23 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 25 H 0.13 4.47 7.72 -2.91 -0.02 4.45 16 26 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 27 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.04 1.49 7.57 -2.38 -0.02 1.47 16 29 H 0.38 10.91 9.12 -74.06 -0.68 10.24 16 30 H 0.12 4.45 7.63 -2.91 -0.02 4.43 16 31 H 0.15 3.73 6.30 -2.91 -0.02 3.71 16 Total: -1.00 -72.05 265.38 2.69 -69.37 By element: Atomic # 1 Polarization: 15.92 SS G_CDS: 0.41 Total: 16.33 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 3.10 Total: -36.98 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: 0.30 Total: -60.60 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -2.97 Total: -36.24 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.85 Total: 48.13 kcal Total: -72.05 2.69 -69.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238399328.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.059 kcal (2) G-P(sol) polarization free energy of solvation -72.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds