Wall clock time and date at job start Thu Apr 9 2020 14:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99852 * 2 1 4 4 H 1.48502 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47204 * 299.99657 * 3 2 1 6 6 H 1.48497 * 109.47475 * 59.99714 * 3 2 1 7 7 C 1.37878 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99844 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99616 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46943 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47229 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99826 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00204 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99749 * 179.97438 * 12 11 10 15 15 C 1.50695 * 109.47099 * 180.02562 * 14 12 11 16 16 C 1.40900 * 126.29168 * 270.29669 * 15 14 12 17 17 C 1.34850 * 107.41621 * 180.12828 * 16 15 14 18 18 N 1.36348 * 108.21820 * 359.62102 * 17 16 15 19 19 H 0.97004 * 125.63569 * 180.26281 * 18 17 16 20 20 C 1.34858 * 126.29153 * 90.00059 * 15 14 12 21 21 H 0.97002 * 119.99923 * 0.02562 * 1 2 3 22 22 H 1.08990 * 109.47554 * 59.99395 * 9 7 2 23 23 H 1.09004 * 109.46797 * 299.99083 * 9 7 2 24 24 H 1.09004 * 109.47467 * 59.99170 * 10 9 7 25 25 H 1.09004 * 109.47066 * 299.99959 * 10 9 7 26 26 H 0.96992 * 119.99671 * 0.02562 * 11 10 9 27 27 H 1.08999 * 109.46910 * 60.00249 * 14 12 11 28 28 H 1.08999 * 109.46931 * 300.00598 * 14 12 11 29 29 H 1.07999 * 126.29093 * 359.97438 * 16 15 14 30 30 H 1.08002 * 125.89234 * 179.89015 * 17 16 15 31 31 H 1.07990 * 125.89063 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0979 0.0007 13 8 3.3995 -6.0979 0.0003 14 6 1.4332 -7.4031 0.0020 15 6 2.4125 -8.5485 0.0018 16 6 2.9581 -9.1791 -1.1339 17 6 3.7837 -10.1521 -0.6978 18 7 3.7743 -10.1397 0.6656 19 1 4.2831 -10.7334 1.2397 20 6 2.9320 -9.1546 1.0887 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8895 23 1 0.6241 -2.5567 0.8904 24 1 2.8721 -3.6043 0.8905 25 1 2.8719 -3.6043 -0.8895 26 1 0.5429 -4.9307 0.0011 27 1 0.8056 -7.4611 -0.8873 28 1 0.8075 -7.4605 0.8926 29 1 2.7510 -8.9307 -2.1643 30 1 4.3571 -10.8224 -1.3209 31 1 2.7183 -8.9027 2.1169 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238585553.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:17 Heat of formation + Delta-G solvation = -6.624401 kcal Electronic energy + Delta-G solvation = -14126.219086 eV Core-core repulsion = 11600.871148 eV Total energy + Delta-G solvation = -2525.347938 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.00534 -38.83315 -34.73068 -32.80335 -32.46425 -29.88895 -29.18647 -26.95933 -24.45277 -21.12181 -20.75420 -20.24111 -19.10746 -18.01507 -16.63700 -16.12945 -15.01758 -14.84959 -14.42254 -13.93623 -13.63076 -13.58299 -13.06775 -12.84257 -12.34945 -12.31286 -11.98337 -11.24791 -11.13809 -10.99680 -10.58835 -10.25768 -9.69396 -9.39198 -9.12662 -8.57843 -8.46763 -8.24657 -8.02229 -6.06144 -4.08530 2.34803 3.00339 3.23166 3.30586 3.38006 3.39098 3.43484 4.05055 4.46158 5.11747 5.15605 5.28676 5.30919 5.40114 5.56863 5.70637 5.88558 6.18359 6.42252 6.45126 6.45308 6.82277 7.02446 7.07540 7.18706 7.58046 7.62900 7.67762 7.93101 8.18667 8.34024 8.86296 8.98396 9.56145 11.05537 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.080116 B = 0.004270 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.407847 B = 6555.503927 C = 6699.020319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.123 3.877 11 N -0.728 5.728 12 C 0.504 3.496 13 O -0.544 6.544 14 C -0.069 4.069 15 C -0.143 4.143 16 C -0.184 4.184 17 C -0.023 4.023 18 N -0.562 5.562 19 H 0.412 0.588 20 C -0.004 4.004 21 H 0.261 0.739 22 H 0.022 0.978 23 H 0.022 0.978 24 H 0.053 0.947 25 H 0.054 0.946 26 H 0.396 0.604 27 H 0.095 0.905 28 H 0.092 0.908 29 H 0.132 0.868 30 H 0.160 0.840 31 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.141 -19.037 0.938 19.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.026 4.026 10 C 0.000 4.000 11 N -0.379 5.379 12 C 0.289 3.711 13 O -0.421 6.421 14 C -0.110 4.110 15 C -0.151 4.151 16 C -0.208 4.208 17 C -0.154 4.154 18 N -0.157 5.157 19 H 0.247 0.753 20 C -0.135 4.135 21 H 0.071 0.929 22 H 0.041 0.959 23 H 0.040 0.960 24 H 0.072 0.928 25 H 0.072 0.928 26 H 0.230 0.770 27 H 0.113 0.887 28 H 0.111 0.889 29 H 0.150 0.850 30 H 0.177 0.823 31 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 2.965 -18.993 1.022 19.250 hybrid contribution 0.165 0.785 0.221 0.832 sum 3.130 -18.207 1.243 18.516 Atomic orbital electron populations 1.69968 1.06076 1.26697 1.50636 1.24999 0.94887 0.99387 0.95061 0.86468 0.80188 0.83393 0.77587 1.19597 1.20943 1.20962 1.21117 0.93288 0.90464 1.50995 0.92242 1.19329 0.94242 0.91193 0.97802 1.21658 0.95980 0.81806 1.00548 1.46351 1.10395 1.06568 1.74545 1.20654 0.88421 0.85372 0.76627 1.90663 1.14139 1.87750 1.49542 1.19999 0.96815 0.90021 1.04131 1.18864 1.03612 0.99548 0.93031 1.20772 1.02428 0.99205 0.98443 1.21734 1.05994 1.04436 0.83202 1.41868 1.37301 1.29521 1.07021 0.75265 1.21568 0.98437 0.94531 0.99001 0.92943 0.95947 0.95962 0.92848 0.92807 0.77038 0.88671 0.88939 0.85009 0.82263 0.82282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.40 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.00 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C 0.12 2.71 5.61 -4.04 -0.02 2.68 16 11 N -0.73 -13.12 5.56 -60.29 -0.33 -13.46 16 12 C 0.50 8.94 7.82 -10.98 -0.09 8.86 16 13 O -0.54 -11.95 16.03 5.56 0.09 -11.86 16 14 C -0.07 -0.90 6.20 -29.04 -0.18 -1.08 16 15 C -0.14 -1.98 4.63 -104.82 -0.49 -2.47 16 16 C -0.18 -2.44 10.81 -39.78 -0.43 -2.87 16 17 C -0.02 -0.26 11.94 -16.75 -0.20 -0.46 16 18 N -0.56 -5.66 6.07 -12.85 -0.08 -5.74 16 19 H 0.41 2.67 8.96 -40.82 -0.37 2.30 16 20 C 0.00 -0.05 11.85 -16.75 -0.20 -0.25 16 21 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 22 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 23 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.40 6.08 8.47 -40.82 -0.35 5.74 16 27 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.13 1.63 8.06 -52.49 -0.42 1.20 16 30 H 0.16 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.16 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 276.84 15.07 4.17 4.17 Total: -1.00 -34.42 276.84 -6.65 -41.07 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -4.06 Total: 3.76 kcal Atomic # 6 Polarization: -6.72 SS G_CDS: -2.16 Total: -8.87 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: 0.32 Total: -44.86 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.09 Total: -11.86 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -34.42 -6.65 -41.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238585553.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.441 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds