Wall clock time and date at job start Thu Apr 9 2020 14:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99852 * 2 1 4 4 H 1.48502 * 109.47135 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47204 * 299.99657 * 3 2 1 6 6 H 1.48497 * 109.47475 * 59.99714 * 3 2 1 7 7 C 1.37878 * 120.00183 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99844 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99616 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46943 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47229 * 179.97438 * 10 9 7 12 12 C 1.34776 * 119.99826 * 179.97438 * 11 10 9 13 13 O 1.21280 * 120.00204 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99749 * 179.97438 * 12 11 10 15 15 C 1.50695 * 109.47099 * 180.02562 * 14 12 11 16 16 C 1.40900 * 126.29168 * 270.29669 * 15 14 12 17 17 C 1.34850 * 107.41621 * 180.12828 * 16 15 14 18 18 N 1.36348 * 108.21820 * 359.62102 * 17 16 15 19 19 H 0.97004 * 125.63569 * 180.26281 * 18 17 16 20 20 C 1.34858 * 126.29153 * 90.00059 * 15 14 12 21 21 H 0.97002 * 119.99923 * 0.02562 * 1 2 3 22 22 H 1.08990 * 109.47554 * 59.99395 * 9 7 2 23 23 H 1.09004 * 109.46797 * 299.99083 * 9 7 2 24 24 H 1.09004 * 109.47467 * 59.99170 * 10 9 7 25 25 H 1.09004 * 109.47066 * 299.99959 * 10 9 7 26 26 H 0.96992 * 119.99671 * 0.02562 * 11 10 9 27 27 H 1.08999 * 109.46910 * 60.00249 * 14 12 11 28 28 H 1.08999 * 109.46931 * 300.00598 * 14 12 11 29 29 H 1.07999 * 126.29093 * 359.97438 * 16 15 14 30 30 H 1.08002 * 125.89234 * 179.89015 * 17 16 15 31 31 H 1.07990 * 125.89063 * 359.97438 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5128 -4.9308 0.0012 12 6 2.1867 -6.0979 0.0007 13 8 3.3995 -6.0979 0.0003 14 6 1.4332 -7.4031 0.0020 15 6 2.4125 -8.5485 0.0018 16 6 2.9581 -9.1791 -1.1339 17 6 3.7837 -10.1521 -0.6978 18 7 3.7743 -10.1397 0.6656 19 1 4.2831 -10.7334 1.2397 20 6 2.9320 -9.1546 1.0887 21 1 -0.4850 0.8401 -0.0004 22 1 0.6247 -2.5571 -0.8895 23 1 0.6241 -2.5567 0.8904 24 1 2.8721 -3.6043 0.8905 25 1 2.8719 -3.6043 -0.8895 26 1 0.5429 -4.9307 0.0011 27 1 0.8056 -7.4611 -0.8873 28 1 0.8075 -7.4605 0.8926 29 1 2.7510 -8.9307 -2.1643 30 1 4.3571 -10.8224 -1.3209 31 1 2.7183 -8.9027 2.1169 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238585553.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:17 Heat of formation + Delta-G solvation = -30.931118 kcal Electronic energy + Delta-G solvation = -14127.273104 eV Core-core repulsion = 11600.871148 eV Total energy + Delta-G solvation = -2526.401956 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.89636 -40.29785 -36.52303 -34.76381 -33.56479 -31.56474 -30.27261 -28.15464 -26.33897 -22.98366 -21.81479 -21.52499 -20.09478 -18.93252 -18.56784 -17.74255 -16.55311 -16.48126 -16.32337 -15.08742 -14.94875 -14.44141 -14.40870 -14.21121 -14.11471 -13.51252 -13.19529 -12.99471 -12.92731 -12.50080 -12.27993 -12.12170 -11.63653 -11.42793 -10.76964 -10.59883 -9.92044 -9.51282 -8.92298 -8.23443 -6.33883 1.41354 1.42092 1.46729 1.55570 1.82678 1.98163 2.39369 2.62098 2.73475 3.11050 4.07669 4.28489 4.35214 4.50104 4.53586 4.55117 4.64372 4.78976 4.88028 4.97647 5.29175 5.35759 5.53134 5.55311 5.60568 5.81307 6.10872 6.18234 6.28012 6.77611 6.80203 6.91895 7.35460 7.44974 8.88573 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.080116 B = 0.004270 C = 0.004179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.407847 B = 6555.503927 C = 6699.020319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.056 0.944 9 C 0.023 3.977 10 C 0.141 3.859 11 N -0.722 5.722 12 C 0.504 3.496 13 O -0.588 6.588 14 C -0.057 4.057 15 C -0.177 4.177 16 C -0.221 4.221 17 C -0.016 4.016 18 N -0.552 5.552 19 H 0.429 0.571 20 C -0.012 4.012 21 H 0.266 0.734 22 H 0.009 0.991 23 H 0.010 0.990 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.411 0.589 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.191 0.809 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.428 -19.811 1.281 20.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.586 4.586 8 H 0.075 0.925 9 C -0.015 4.015 10 C 0.017 3.983 11 N -0.374 5.374 12 C 0.292 3.708 13 O -0.469 6.469 14 C -0.097 4.097 15 C -0.184 4.184 16 C -0.246 4.246 17 C -0.148 4.148 18 N -0.148 5.148 19 H 0.268 0.732 20 C -0.144 4.144 21 H 0.075 0.925 22 H 0.027 0.973 23 H 0.028 0.972 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.247 0.753 27 H 0.133 0.867 28 H 0.140 0.860 29 H 0.148 0.852 30 H 0.208 0.792 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 3.233 -19.803 1.378 20.112 hybrid contribution 0.083 0.960 0.110 0.970 sum 3.315 -18.842 1.488 19.190 Atomic orbital electron populations 1.70063 1.07504 1.27942 1.51067 1.25869 0.95811 1.03066 0.94392 0.85393 0.78898 0.78761 0.77967 1.19107 1.20136 1.20099 1.21511 0.93518 0.92084 1.51482 0.92539 1.19139 0.94222 0.91734 0.96398 1.21150 0.95027 0.82790 0.99311 1.46195 1.11062 1.05505 1.74615 1.21534 0.88098 0.86382 0.74796 1.90637 1.16357 1.88396 1.51473 1.19996 0.96589 0.86693 1.06429 1.19136 1.04932 1.00420 0.93932 1.21030 1.04129 1.00810 0.98617 1.22211 1.04939 1.03829 0.83781 1.41928 1.36632 1.29121 1.07106 0.73213 1.21917 0.98264 0.94622 0.99580 0.92512 0.97283 0.97160 0.93990 0.94180 0.75316 0.86706 0.86040 0.85196 0.79211 0.80518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.73 13.29 21.45 0.28 -54.44 16 2 C 0.01 0.42 5.46 84.65 0.46 0.88 16 3 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 4 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 7 C -0.55 -31.24 9.11 25.60 0.23 -31.00 16 8 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.16 5.09 29.85 0.15 1.31 16 10 C 0.14 6.33 5.61 86.38 0.48 6.82 16 11 N -0.72 -25.79 5.56 -463.05 -2.57 -28.37 16 12 C 0.50 17.58 7.82 87.66 0.69 18.27 16 13 O -0.59 -25.99 16.03 -3.03 -0.05 -26.04 16 14 C -0.06 -1.39 6.20 29.10 0.18 -1.21 16 15 C -0.18 -4.67 4.63 -19.99 -0.09 -4.76 16 16 C -0.22 -5.67 10.81 22.14 0.24 -5.43 16 17 C -0.02 -0.33 11.94 83.21 0.99 0.66 16 18 N -0.55 -9.89 6.07 -194.56 -1.18 -11.07 16 19 H 0.43 4.45 8.96 -92.71 -0.83 3.62 16 20 C -0.01 -0.26 11.85 83.22 0.99 0.72 16 21 H 0.27 14.69 8.31 -92.71 -0.77 13.92 16 22 H 0.01 0.47 8.14 -2.39 -0.02 0.46 16 23 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 24 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 25 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 26 H 0.41 12.27 8.47 -92.71 -0.79 11.49 16 27 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 28 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.13 3.20 8.06 -2.91 -0.02 3.17 16 30 H 0.19 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.18 3.14 8.06 -2.92 -0.02 3.11 16 Total: -1.00 -73.82 276.84 2.36 -71.47 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -0.48 Total: 16.03 kcal Atomic # 6 Polarization: -18.06 SS G_CDS: 4.32 Total: -13.74 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -3.47 Total: -93.88 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.05 Total: -26.04 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -73.82 2.36 -71.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238585553.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.536 kcal (2) G-P(sol) polarization free energy of solvation -73.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds