Wall clock time and date at job start Thu Apr 9 2020 14:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31034 * 1 3 3 Si 1.86798 * 119.99892 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00223 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99782 * 3 2 1 7 7 C 1.39695 * 119.99533 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99382 * 180.02562 * 7 2 1 9 9 C 1.41596 * 120.00396 * 359.97438 * 7 2 1 10 10 C 1.41878 * 126.55423 * 359.68296 * 9 7 2 11 11 N 1.30323 * 108.04341 * 179.87873 * 10 9 7 12 12 N 1.39872 * 109.23384 * 0.39015 * 11 10 9 13 13 C 1.46499 * 125.67877 * 179.76847 * 12 11 10 14 14 H 1.08996 * 109.51988 * 334.97704 * 13 12 11 15 15 C 1.53174 * 109.52150 * 95.10414 * 13 12 11 16 16 C 1.53193 * 109.03113 * 176.82428 * 15 13 12 17 17 C 1.53087 * 109.21215 * 303.11250 * 16 15 13 18 18 O 1.42903 * 109.41480 * 57.57842 * 17 16 15 19 19 C 1.42907 * 114.09570 * 298.83483 * 18 17 16 20 20 C 1.34509 * 108.64684 * 359.75083 * 12 11 10 21 21 H 0.97000 * 119.99299 * 0.02562 * 1 2 3 22 22 H 1.07994 * 125.98019 * 0.04535 * 10 9 7 23 23 H 1.09004 * 109.54112 * 296.75306 * 15 13 12 24 24 H 1.08997 * 109.54489 * 57.02264 * 15 13 12 25 25 H 1.09004 * 109.52115 * 183.17201 * 16 15 13 26 26 H 1.09001 * 109.51666 * 63.05063 * 16 15 13 27 27 H 1.08999 * 109.48421 * 297.58940 * 17 16 15 28 28 H 1.09004 * 109.48010 * 177.55935 * 17 16 15 29 29 H 1.08998 * 109.48301 * 301.18058 * 19 18 17 30 30 H 1.09005 * 109.48834 * 181.14559 * 19 18 17 31 31 H 1.07995 * 126.40451 * 179.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 1.2794 2.7464 -0.0006 5 1 3.0981 1.6964 1.2124 6 1 3.0981 1.6963 -1.2125 7 6 2.0087 -1.2099 0.0005 8 1 3.0887 -1.2098 0.0010 9 6 1.3007 -2.4361 0.0016 10 6 -0.1088 -2.5980 0.0086 11 7 -0.3684 -3.8751 0.0046 12 7 0.8340 -4.5898 0.0041 13 6 0.9605 -6.0493 0.0049 14 1 0.0649 -6.4922 0.4405 15 6 1.1315 -6.5490 -1.4329 16 6 1.3421 -8.0663 -1.4126 17 6 2.5519 -8.3952 -0.5341 18 8 2.3397 -7.8760 0.7803 19 6 2.1851 -6.4562 0.8288 20 6 1.8549 -3.7139 0.0023 21 1 -0.4849 0.8401 -0.0004 22 1 -0.8388 -1.8023 0.0134 23 1 0.2378 -6.3117 -2.0101 24 1 1.9982 -6.0675 -1.8856 25 1 1.5209 -8.4228 -2.4271 26 1 0.4545 -8.5518 -1.0070 27 1 3.4464 -7.9438 -0.9632 28 1 2.6797 -9.4765 -0.4815 29 1 3.0747 -5.9794 0.4174 30 1 2.0486 -6.1403 1.8631 31 1 2.9073 -3.9562 0.0019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257819407.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:21 Heat of formation + Delta-G solvation = 18.840219 kcal Electronic energy + Delta-G solvation = -15028.276244 eV Core-core repulsion = 12504.032535 eV Total energy + Delta-G solvation = -2524.243709 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.81909 -38.52697 -34.16567 -33.14686 -31.80205 -28.98989 -28.17511 -25.08637 -24.85523 -22.96917 -20.62155 -19.50125 -18.76792 -17.31144 -16.15975 -15.81892 -15.14445 -14.76981 -14.46115 -14.23206 -13.59021 -12.73171 -12.68184 -12.44887 -12.44668 -11.50588 -11.27793 -11.14484 -11.12420 -10.91952 -10.79218 -10.48076 -10.29287 -10.01485 -9.50835 -9.19863 -8.81139 -7.80572 -7.15358 -6.41963 -3.98851 3.07052 3.20275 3.23232 3.43140 3.55878 4.12589 4.15539 4.42339 4.86234 4.88519 4.98545 5.01466 5.27271 5.42297 5.61079 5.63345 5.74751 5.80851 5.89511 6.00895 6.21856 6.34868 6.43824 6.87249 7.15735 7.33240 7.52291 7.69280 8.16112 8.55347 8.66399 9.07046 9.18066 9.51895 10.57609 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.058638 B = 0.006378 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.393913 B = 4388.831667 C = 4593.076311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.067 3.933 3 Si 0.915 3.085 4 H -0.282 1.282 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.438 4.438 8 H 0.067 0.933 9 C -0.018 4.018 10 C 0.032 3.968 11 N -0.338 5.338 12 N -0.388 5.388 13 C 0.149 3.851 14 H 0.091 0.909 15 C -0.134 4.134 16 C -0.152 4.152 17 C 0.056 3.944 18 O -0.379 6.379 19 C 0.058 3.942 20 C -0.127 4.127 21 H 0.274 0.726 22 H 0.203 0.797 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.051 0.949 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.101 0.899 31 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.604 -10.538 -1.666 11.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.144 4.144 3 Si 0.741 3.259 4 H -0.207 1.207 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.473 4.473 8 H 0.085 0.915 9 C -0.027 4.027 10 C -0.156 4.156 11 N -0.160 5.160 12 N -0.178 5.178 13 C 0.044 3.956 14 H 0.109 0.891 15 C -0.172 4.172 16 C -0.190 4.190 17 C -0.020 4.020 18 O -0.297 6.297 19 C -0.020 4.020 20 C -0.267 4.267 21 H 0.085 0.915 22 H 0.219 0.781 23 H 0.091 0.909 24 H 0.086 0.914 25 H 0.093 0.907 26 H 0.091 0.909 27 H 0.069 0.931 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.119 0.881 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.569 -11.465 -1.492 11.844 hybrid contribution 1.136 1.618 -0.356 2.009 sum 3.705 -9.847 -1.847 10.682 Atomic orbital electron populations 1.69448 1.07110 1.28010 1.42912 1.25640 0.94783 1.00579 0.93373 0.86267 0.79585 0.80745 0.79277 1.20700 1.19542 1.19584 1.18696 0.93558 0.89117 1.45924 0.91450 1.18210 0.91810 0.91601 1.01114 1.25112 0.98057 0.91844 1.00574 1.76577 1.05700 1.07044 1.26681 1.47326 1.04214 1.02880 1.63362 1.21241 0.99613 0.79006 0.95778 0.89139 1.22080 1.03214 0.94699 0.97256 1.22204 0.99617 0.96509 1.00663 1.22627 0.96634 0.99216 0.83554 1.87949 1.92855 1.21127 1.27755 1.22869 0.96708 0.80860 1.01553 1.22082 0.92180 0.89900 1.22519 0.91527 0.78098 0.90876 0.91360 0.90704 0.90922 0.93065 0.88867 0.92190 0.88107 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.51 10.33 55.54 0.57 -21.93 16 2 C 0.07 1.74 5.49 -17.35 -0.10 1.65 16 3 Si 0.92 19.74 29.56 -169.99 -5.02 14.71 16 4 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 7 C -0.44 -12.05 9.40 -37.76 -0.35 -12.41 16 8 H 0.07 1.77 7.84 -52.49 -0.41 1.36 16 9 C -0.02 -0.48 5.93 -106.84 -0.63 -1.12 16 10 C 0.03 0.86 10.91 -16.80 -0.18 0.68 16 11 N -0.34 -8.72 12.47 30.97 0.39 -8.34 16 12 N -0.39 -8.85 3.50 -53.78 -0.19 -9.04 16 13 C 0.15 2.65 3.38 -67.79 -0.23 2.42 16 14 H 0.09 1.63 8.14 -51.93 -0.42 1.20 16 15 C -0.13 -2.05 5.64 -26.54 -0.15 -2.20 16 16 C -0.15 -1.76 6.13 -26.59 -0.16 -1.92 16 17 C 0.06 0.64 6.84 37.20 0.25 0.90 16 18 O -0.38 -5.50 10.77 -35.23 -0.38 -5.88 16 19 C 0.06 0.91 5.81 37.21 0.22 1.13 16 20 C -0.13 -3.09 10.64 -15.99 -0.17 -3.26 16 21 H 0.27 6.75 8.30 -40.82 -0.34 6.41 16 22 H 0.20 5.62 5.77 -52.49 -0.30 5.31 16 23 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 24 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.06 0.93 7.01 -51.93 -0.36 0.57 16 30 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 31 H 0.14 2.98 7.17 -52.49 -0.38 2.60 16 LS Contribution 259.35 15.07 3.91 3.91 Total: -1.00 -29.42 259.35 -6.20 -35.62 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -3.97 Total: 5.07 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -1.51 Total: -14.13 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: 0.77 Total: -39.31 kcal Atomic # 8 Polarization: -5.50 SS G_CDS: -0.38 Total: -5.88 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.42 -6.20 -35.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257819407.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.462 kcal (2) G-P(sol) polarization free energy of solvation -29.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds