Wall clock time and date at job start Thu Apr 9 2020 14:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31034 * 1 3 3 Si 1.86798 * 119.99892 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00223 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99782 * 3 2 1 7 7 C 1.39695 * 119.99533 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99382 * 180.02562 * 7 2 1 9 9 C 1.41596 * 120.00396 * 359.97438 * 7 2 1 10 10 C 1.41878 * 126.55423 * 359.68296 * 9 7 2 11 11 N 1.30323 * 108.04341 * 179.87873 * 10 9 7 12 12 N 1.39872 * 109.23384 * 0.39015 * 11 10 9 13 13 C 1.46499 * 125.67877 * 179.76847 * 12 11 10 14 14 H 1.08996 * 109.51988 * 334.97704 * 13 12 11 15 15 C 1.53174 * 109.52150 * 95.10414 * 13 12 11 16 16 C 1.53193 * 109.03113 * 176.82428 * 15 13 12 17 17 C 1.53087 * 109.21215 * 303.11250 * 16 15 13 18 18 O 1.42903 * 109.41480 * 57.57842 * 17 16 15 19 19 C 1.42907 * 114.09570 * 298.83483 * 18 17 16 20 20 C 1.34509 * 108.64684 * 359.75083 * 12 11 10 21 21 H 0.97000 * 119.99299 * 0.02562 * 1 2 3 22 22 H 1.07994 * 125.98019 * 0.04535 * 10 9 7 23 23 H 1.09004 * 109.54112 * 296.75306 * 15 13 12 24 24 H 1.08997 * 109.54489 * 57.02264 * 15 13 12 25 25 H 1.09004 * 109.52115 * 183.17201 * 16 15 13 26 26 H 1.09001 * 109.51666 * 63.05063 * 16 15 13 27 27 H 1.08999 * 109.48421 * 297.58940 * 17 16 15 28 28 H 1.09004 * 109.48010 * 177.55935 * 17 16 15 29 29 H 1.08998 * 109.48301 * 301.18058 * 19 18 17 30 30 H 1.09005 * 109.48834 * 181.14559 * 19 18 17 31 31 H 1.07995 * 126.40451 * 179.97438 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3103 0.0000 0.0000 3 14 2.2443 1.6177 0.0000 4 1 1.2794 2.7464 -0.0006 5 1 3.0981 1.6964 1.2124 6 1 3.0981 1.6963 -1.2125 7 6 2.0087 -1.2099 0.0005 8 1 3.0887 -1.2098 0.0010 9 6 1.3007 -2.4361 0.0016 10 6 -0.1088 -2.5980 0.0086 11 7 -0.3684 -3.8751 0.0046 12 7 0.8340 -4.5898 0.0041 13 6 0.9605 -6.0493 0.0049 14 1 0.0649 -6.4922 0.4405 15 6 1.1315 -6.5490 -1.4329 16 6 1.3421 -8.0663 -1.4126 17 6 2.5519 -8.3952 -0.5341 18 8 2.3397 -7.8760 0.7803 19 6 2.1851 -6.4562 0.8288 20 6 1.8549 -3.7139 0.0023 21 1 -0.4849 0.8401 -0.0004 22 1 -0.8388 -1.8023 0.0134 23 1 0.2378 -6.3117 -2.0101 24 1 1.9982 -6.0675 -1.8856 25 1 1.5209 -8.4228 -2.4271 26 1 0.4545 -8.5518 -1.0070 27 1 3.4464 -7.9438 -0.9632 28 1 2.6797 -9.4765 -0.4815 29 1 3.0747 -5.9794 0.4174 30 1 2.0486 -6.1403 1.8631 31 1 2.9073 -3.9562 0.0019 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000257819407.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:20 Heat of formation + Delta-G solvation = 0.081927 kcal Electronic energy + Delta-G solvation = -15029.089664 eV Core-core repulsion = 12504.032535 eV Total energy + Delta-G solvation = -2525.057130 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.48725 -39.96093 -35.79093 -34.78418 -33.11994 -30.99152 -29.80638 -26.90388 -26.08802 -24.37916 -22.01275 -21.46776 -20.41300 -19.19676 -17.51319 -16.99656 -16.79825 -16.39112 -15.77558 -15.63427 -15.14884 -14.45922 -14.25313 -14.04067 -13.65360 -13.24356 -12.93663 -12.85435 -12.58775 -12.39778 -12.23153 -11.99775 -11.79966 -11.49689 -11.10837 -10.87417 -10.60931 -9.73736 -9.13942 -8.35218 -6.02341 1.28827 1.45703 1.57153 1.58042 1.98504 2.34819 2.40592 2.92948 3.51240 3.55271 3.72557 3.83681 3.95450 4.06917 4.36033 4.47686 4.54888 4.63833 4.65702 4.84138 4.90210 4.95081 5.07145 5.23187 5.32340 5.52756 5.71225 6.05793 6.10866 6.57802 6.72235 7.08509 7.16670 7.51369 8.65564 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.058638 B = 0.006378 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.393913 B = 4388.831667 C = 4593.076311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.020 3.980 3 Si 0.989 3.011 4 H -0.274 1.274 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.473 4.473 8 H 0.070 0.930 9 C -0.063 4.063 10 C 0.002 3.998 11 N -0.354 5.354 12 N -0.374 5.374 13 C 0.135 3.865 14 H 0.087 0.913 15 C -0.128 4.128 16 C -0.142 4.142 17 C 0.049 3.951 18 O -0.386 6.386 19 C 0.069 3.931 20 C -0.106 4.106 21 H 0.279 0.721 22 H 0.188 0.812 23 H 0.057 0.943 24 H 0.064 0.936 25 H 0.102 0.898 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.125 0.875 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.224 -11.850 -2.075 13.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.188 4.188 3 Si 0.811 3.189 4 H -0.199 1.199 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.508 4.508 8 H 0.089 0.911 9 C -0.072 4.072 10 C -0.183 4.183 11 N -0.178 5.178 12 N -0.163 5.163 13 C 0.032 3.968 14 H 0.106 0.894 15 C -0.167 4.167 16 C -0.180 4.180 17 C -0.027 4.027 18 O -0.303 6.303 19 C -0.009 4.009 20 C -0.248 4.248 21 H 0.089 0.911 22 H 0.205 0.795 23 H 0.076 0.924 24 H 0.083 0.917 25 H 0.121 0.879 26 H 0.095 0.905 27 H 0.079 0.921 28 H 0.142 0.858 29 H 0.084 0.916 30 H 0.112 0.888 31 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 4.171 -12.818 -1.905 13.613 hybrid contribution 0.634 1.794 -0.248 1.919 sum 4.805 -11.023 -2.153 12.216 Atomic orbital electron populations 1.69558 1.08495 1.29075 1.43213 1.26542 0.95657 1.03972 0.92582 0.85140 0.78217 0.76061 0.79439 1.19913 1.18922 1.18946 1.18990 0.93888 0.90113 1.47775 0.91127 1.18633 0.92196 0.93156 1.03264 1.24907 0.98205 0.92214 1.02942 1.76488 1.07143 1.06729 1.27420 1.47761 1.03112 1.04807 1.60649 1.21738 1.00859 0.75900 0.98281 0.89437 1.22019 1.02328 0.97651 0.94719 1.22183 1.00068 0.93157 1.02567 1.22942 0.96714 1.01014 0.82025 1.87960 1.92777 1.19776 1.29831 1.22654 0.95490 0.82090 1.00660 1.22484 0.93542 0.89271 1.19495 0.91089 0.79545 0.92402 0.91716 0.87912 0.90546 0.92057 0.85761 0.91647 0.88798 0.81643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -47.85 10.33 21.79 0.22 -47.63 16 2 C 0.02 1.04 5.49 85.16 0.47 1.51 16 3 Si 0.99 40.60 29.56 68.60 2.03 42.63 16 4 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 7 C -0.47 -26.47 9.40 23.45 0.22 -26.25 16 8 H 0.07 3.74 7.84 -2.91 -0.02 3.71 16 9 C -0.06 -3.52 5.93 -21.30 -0.13 -3.64 16 10 C 0.00 0.14 10.91 85.82 0.94 1.08 16 11 N -0.35 -18.66 12.47 -55.94 -0.70 -19.35 16 12 N -0.37 -16.99 3.50 -324.06 -1.14 -18.12 16 13 C 0.14 4.65 3.38 45.08 0.15 4.80 16 14 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 15 C -0.13 -3.69 5.64 30.72 0.17 -3.52 16 16 C -0.14 -2.79 6.13 30.69 0.19 -2.60 16 17 C 0.05 0.92 6.84 72.01 0.49 1.41 16 18 O -0.39 -10.02 10.77 -148.98 -1.60 -11.63 16 19 C 0.07 2.04 5.81 72.01 0.42 2.46 16 20 C -0.11 -5.08 10.64 84.53 0.90 -4.18 16 21 H 0.28 14.06 8.30 -92.71 -0.77 13.29 16 22 H 0.19 11.02 5.77 -2.91 -0.02 11.00 16 23 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 24 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 25 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.07 1.86 7.01 -2.39 -0.02 1.84 16 30 H 0.09 2.88 8.14 -2.38 -0.02 2.86 16 31 H 0.17 6.88 7.17 -2.91 -0.02 6.86 16 Total: -1.00 -64.53 259.35 3.76 -60.77 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: 1.12 Total: 22.27 kcal Atomic # 6 Polarization: -32.76 SS G_CDS: 3.82 Total: -28.94 kcal Atomic # 7 Polarization: -83.50 SS G_CDS: -1.61 Total: -85.11 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -1.60 Total: -11.63 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Total: -64.53 3.76 -60.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257819407.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.853 kcal (2) G-P(sol) polarization free energy of solvation -64.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds