Wall clock time and date at job start Thu Apr 9 2020 14:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30764 * 1 3 3 Si 1.86796 * 120.00292 * 2 1 4 4 H 1.48497 * 109.47172 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.47241 * 120.00065 * 3 2 1 6 6 H 1.48501 * 109.47173 * 239.99982 * 3 2 1 7 7 C 1.40175 * 119.99577 * 180.27315 * 2 1 3 8 8 H 1.08002 * 119.99587 * 179.97438 * 7 2 1 9 9 C 1.40236 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.39807 * 126.66054 * 359.68037 * 9 7 2 11 11 C 1.38701 * 107.53399 * 179.89990 * 10 9 7 12 12 N 1.31241 * 109.07933 * 0.37754 * 11 10 9 13 13 N 1.37454 * 126.65842 * 179.97438 * 9 7 2 14 14 C 1.46499 * 126.20666 * 359.94400 * 13 9 7 15 15 H 1.09007 * 109.52116 * 0.02562 * 14 13 9 16 16 C 1.53172 * 109.52666 * 239.87494 * 14 13 9 17 17 C 1.53181 * 109.03432 * 183.17292 * 16 14 13 18 18 C 1.53092 * 109.21608 * 56.88437 * 17 16 14 19 19 O 1.42900 * 109.41481 * 302.42780 * 18 17 16 20 20 C 1.42906 * 114.10081 * 61.15419 * 19 18 17 21 21 H 0.97005 * 119.99645 * 359.72408 * 1 2 3 22 22 H 1.07994 * 126.23027 * 0.02562 * 10 9 7 23 23 H 1.08002 * 125.45983 * 180.10387 * 11 10 9 24 24 H 1.09003 * 109.53947 * 302.98193 * 16 14 13 25 25 H 1.08997 * 109.54400 * 63.24084 * 16 14 13 26 26 H 1.08995 * 109.47389 * 296.97805 * 17 16 14 27 27 H 1.09005 * 109.57486 * 176.85089 * 17 16 14 28 28 H 1.09000 * 109.48387 * 182.43771 * 18 17 16 29 29 H 1.09001 * 109.47628 * 62.40544 * 18 17 16 30 30 H 1.08998 * 109.47816 * 178.86298 * 20 19 18 31 31 H 1.09000 * 109.48868 * 58.82950 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3076 0.0000 0.0000 3 14 2.2417 1.6177 0.0000 4 1 1.2768 2.7464 0.0006 5 1 3.0955 1.6963 1.2125 6 1 3.0955 1.6963 -1.2125 7 6 2.0084 -1.2140 -0.0058 8 1 3.0884 -1.2140 -0.0062 9 6 1.3072 -2.4284 -0.0121 10 6 -0.0815 -2.5905 -0.0072 11 6 -0.3432 -3.9525 -0.0190 12 7 0.7938 -4.6079 -0.0223 13 7 1.8517 -3.6905 -0.0187 14 6 3.2799 -4.0168 -0.0216 15 1 3.8638 -3.0963 -0.0172 16 6 3.6165 -4.8311 -1.2744 17 6 5.0937 -5.2335 -1.2267 18 6 5.3623 -6.0124 0.0636 19 8 4.9995 -5.2086 1.1879 20 6 3.6185 -4.8426 1.2223 21 1 -0.4850 0.8401 0.0040 22 1 -0.8164 -1.7993 0.0018 23 1 -1.3254 -4.4018 -0.0203 24 1 2.9961 -5.7269 -1.3046 25 1 3.4306 -4.2273 -2.1626 26 1 5.7151 -4.3383 -1.2478 27 1 5.3293 -5.8608 -2.0866 28 1 6.4213 -6.2636 0.1228 29 1 4.7708 -6.9280 0.0652 30 1 3.4214 -4.2510 2.1162 31 1 3.0041 -5.7428 1.2392 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000257890823.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:26 Heat of formation + Delta-G solvation = 10.892178 kcal Electronic energy + Delta-G solvation = -15337.646507 eV Core-core repulsion = 12813.058145 eV Total energy + Delta-G solvation = -2524.588362 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.45396 -38.26339 -33.74575 -33.54719 -31.66818 -29.18319 -27.55212 -25.08663 -24.70108 -23.05243 -20.52048 -19.63559 -18.50350 -17.09167 -15.86862 -15.72251 -15.44262 -14.49189 -14.32997 -13.92191 -13.20680 -12.73793 -12.47103 -12.29868 -11.98799 -11.68461 -11.58694 -11.30181 -11.14160 -10.83540 -10.60190 -10.45480 -10.10051 -9.78991 -9.45341 -9.31451 -8.65130 -7.77825 -6.78771 -6.63875 -4.47339 2.94619 3.05564 3.07864 3.61136 3.76783 3.95509 4.36302 4.54814 5.07040 5.09524 5.16101 5.22436 5.43953 5.54242 5.67351 5.86371 5.95656 6.01151 6.08798 6.21613 6.46588 6.52913 6.62824 7.04589 7.31476 7.36854 7.52994 7.85671 8.12381 8.48623 8.71362 8.85524 9.20886 9.65358 10.24718 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.029263 B = 0.009466 C = 0.007812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.607687 B = 2957.297355 C = 3583.314469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.078 3.922 3 Si 0.922 3.078 4 H -0.277 1.277 5 H -0.265 1.265 6 H -0.266 1.266 7 C -0.451 4.451 8 H 0.073 0.927 9 C 0.254 3.746 10 C -0.361 4.361 11 C 0.039 3.961 12 N -0.396 5.396 13 N -0.424 5.424 14 C 0.156 3.844 15 H 0.095 0.905 16 C -0.127 4.127 17 C -0.152 4.152 18 C 0.059 3.941 19 O -0.384 6.384 20 C 0.058 3.942 21 H 0.278 0.722 22 H 0.158 0.842 23 H 0.144 0.856 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.094 0.906 31 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.021 -4.118 -1.024 8.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.142 4.142 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.190 1.190 6 H -0.190 1.190 7 C -0.488 4.488 8 H 0.091 0.909 9 C 0.135 3.865 10 C -0.392 4.392 11 C -0.142 4.142 12 N -0.218 5.218 13 N -0.214 5.214 14 C 0.051 3.949 15 H 0.113 0.887 16 C -0.166 4.166 17 C -0.191 4.191 18 C -0.018 4.018 19 O -0.302 6.302 20 C -0.020 4.020 21 H 0.090 0.910 22 H 0.175 0.825 23 H 0.161 0.839 24 H 0.090 0.910 25 H 0.086 0.914 26 H 0.090 0.910 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.067 0.933 30 H 0.112 0.888 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.571 -5.138 -0.881 9.192 hybrid contribution -0.291 1.521 -0.295 1.577 sum 7.281 -3.616 -1.176 8.214 Atomic orbital electron populations 1.69728 1.07382 1.28566 1.35577 1.25741 0.94880 1.00964 0.92601 0.86138 0.79700 0.79684 0.79796 1.20171 1.18979 1.19041 1.18584 0.93967 0.88817 1.47399 0.90877 1.18781 0.92209 0.83667 0.91817 1.22142 0.95106 0.94600 1.27337 1.23127 0.95588 0.94822 1.00625 1.76800 0.93830 1.16220 1.34999 1.48447 1.02724 1.04158 1.66083 1.21198 0.80031 0.98888 0.94762 0.88669 1.21926 0.95183 1.00994 0.98487 1.22212 0.97280 1.01220 0.98368 1.22568 1.00327 0.93049 0.85836 1.87910 1.26373 1.70969 1.44955 1.22936 0.81482 0.99012 0.98539 0.91022 0.82477 0.83863 0.90972 0.91365 0.91034 0.90948 0.89173 0.93299 0.88775 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.29 10.30 55.56 0.57 -19.72 16 2 C 0.08 1.94 5.50 -17.28 -0.10 1.85 16 3 Si 0.92 18.63 29.56 -169.99 -5.03 13.61 16 4 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.45 -11.96 9.04 -38.10 -0.34 -12.31 16 8 H 0.07 1.83 6.76 -52.49 -0.35 1.47 16 9 C 0.25 6.97 6.75 -84.01 -0.57 6.40 16 10 C -0.36 -9.93 9.77 -38.82 -0.38 -10.31 16 11 C 0.04 0.98 11.93 -17.63 -0.21 0.77 16 12 N -0.40 -10.05 12.40 30.45 0.38 -9.67 16 13 N -0.42 -10.58 3.36 -52.02 -0.17 -10.75 16 14 C 0.16 3.22 3.14 -67.79 -0.21 3.01 16 15 H 0.10 2.00 6.72 -51.93 -0.35 1.65 16 16 C -0.13 -2.26 5.58 -26.55 -0.15 -2.41 16 17 C -0.15 -2.10 6.13 -26.59 -0.16 -2.26 16 18 C 0.06 0.80 6.84 37.21 0.25 1.06 16 19 O -0.38 -6.54 10.77 -35.23 -0.38 -6.92 16 20 C 0.06 1.09 6.39 37.21 0.24 1.33 16 21 H 0.28 6.52 8.29 -40.82 -0.34 6.18 16 22 H 0.16 4.45 5.73 -52.49 -0.30 4.15 16 23 H 0.14 3.09 8.06 -52.49 -0.42 2.67 16 24 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 25 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 31 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 259.49 15.07 3.91 3.91 Total: -1.00 -29.17 259.49 -6.29 -35.46 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -3.94 Total: 6.95 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -1.63 Total: -12.87 kcal Atomic # 7 Polarization: -40.91 SS G_CDS: 0.78 Total: -40.14 kcal Atomic # 8 Polarization: -6.54 SS G_CDS: -0.38 Total: -6.92 kcal Atomic # 14 Polarization: 18.63 SS G_CDS: -5.03 Total: 13.61 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -29.17 -6.29 -35.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000257890823.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.355 kcal (2) G-P(sol) polarization free energy of solvation -29.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds