Wall clock time and date at job start Thu Apr 9 2020 14:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99750 * 2 1 4 4 C 1.50695 * 109.46874 * 180.02562 * 3 2 1 5 5 C 1.38359 * 119.97673 * 0.02562 * 4 3 2 6 6 C 1.38774 * 120.59325 * 180.02562 * 5 4 3 7 7 C 1.36528 * 120.53719 * 359.95710 * 6 5 4 8 8 C 1.40684 * 119.93118 * 0.02629 * 7 6 5 9 9 C 1.41159 * 120.28936 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99974 * 155.10203 * 9 8 7 11 11 C 1.39933 * 120.00011 * 335.09972 * 9 8 7 12 12 N 1.30866 * 119.99866 * 342.32040 * 11 9 8 13 13 Si 1.86797 * 120.00157 * 162.32533 * 11 9 8 14 14 H 1.48493 * 109.47413 * 94.65391 * 13 11 9 15 15 H 1.48496 * 109.47037 * 214.65670 * 13 11 9 16 16 H 1.48504 * 109.46921 * 334.65137 * 13 11 9 17 17 C 1.38406 * 119.97682 * 179.97438 * 4 3 2 18 18 O 1.35643 * 120.26563 * 0.27805 * 17 4 3 19 19 C 1.42897 * 117.00126 * 269.72329 * 18 17 4 20 20 H 1.09003 * 109.47319 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47104 * 300.00105 * 1 2 3 22 22 H 1.08993 * 109.47480 * 60.00489 * 1 2 3 23 23 H 1.08996 * 109.47520 * 60.00031 * 3 2 1 24 24 H 1.08997 * 109.46636 * 299.99532 * 3 2 1 25 25 H 1.07998 * 119.70274 * 0.02562 * 5 4 3 26 26 H 1.07996 * 119.73270 * 179.97438 * 6 5 4 27 27 H 1.08005 * 120.03289 * 180.02562 * 7 6 5 28 28 H 0.97001 * 120.00176 * 180.02562 * 12 11 9 29 29 H 1.09000 * 109.47341 * 179.97438 * 19 18 17 30 30 H 1.08995 * 109.46656 * 300.00042 * 19 18 17 31 31 H 1.09000 * 109.47394 * 59.99162 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 6 4.1069 -0.0628 -0.0016 6 6 5.4891 -0.1873 -0.0017 7 6 6.2855 0.9217 -0.0016 8 6 5.7046 2.2030 -0.0010 9 6 6.5208 3.3547 -0.0004 10 1 6.1408 4.2860 -0.3936 11 6 7.8222 3.2897 0.5098 12 7 8.1713 2.2967 1.2874 13 14 9.0610 4.6204 0.0811 14 1 9.0665 5.6538 1.1475 15 1 10.4140 4.0191 -0.0324 16 1 8.6874 5.2462 -1.2127 17 6 4.2965 2.3271 -0.0013 18 8 3.7183 3.5541 0.0043 19 6 3.4417 4.1468 -1.2662 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 1.6886 1.8464 0.8899 24 1 1.6886 1.8463 -0.8900 25 1 3.4898 -0.9491 -0.0024 26 1 5.9384 -1.1693 -0.0021 27 1 7.3603 0.8153 -0.0021 28 1 9.0733 2.2518 1.6414 29 1 2.9807 5.1234 -1.1189 30 1 4.3716 4.2636 -1.8226 31 1 2.7615 3.5050 -1.8262 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258113383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:38 Heat of formation + Delta-G solvation = -68.292142 kcal Electronic energy + Delta-G solvation = -15105.044725 eV Core-core repulsion = 12544.729922 eV Total energy + Delta-G solvation = -2560.314803 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.72554 -37.18539 -35.78275 -33.73327 -30.57437 -29.29509 -26.96423 -26.03683 -25.01849 -24.33378 -20.59085 -20.19019 -17.16266 -16.36602 -15.95371 -15.46333 -15.04321 -14.82980 -14.34934 -14.29612 -13.54012 -12.84455 -12.63881 -12.37425 -12.16329 -11.57900 -11.42422 -11.14498 -11.03552 -10.76692 -10.62375 -10.35301 -10.01469 -9.55310 -9.39959 -9.14046 -8.65006 -7.36173 -7.23101 -6.77287 -4.34047 2.69925 2.80239 3.06352 3.10524 3.21123 3.91700 4.21348 4.57453 4.97627 5.44791 5.50282 5.58515 5.76971 5.82114 5.93994 6.05391 6.09268 6.17352 6.30421 6.42634 6.73660 7.02766 7.14750 7.23316 7.38111 7.49075 7.82220 7.92389 8.12025 8.21686 8.42966 8.71526 8.82624 9.13292 10.15892 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.041100 B = 0.008350 C = 0.007172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.094243 B = 3352.602555 C = 3902.999203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.117 3.883 4 C -0.081 4.081 5 C -0.207 4.207 6 C -0.109 4.109 7 C -0.152 4.152 8 C 0.099 3.901 9 C -0.445 4.445 10 H 0.080 0.920 11 C 0.075 3.925 12 N -0.790 5.790 13 Si 0.909 3.091 14 H -0.270 1.270 15 H -0.275 1.275 16 H -0.261 1.261 17 C -0.031 4.031 18 O -0.323 6.323 19 C 0.031 3.969 20 H 0.080 0.920 21 H 0.037 0.963 22 H 0.035 0.965 23 H 0.054 0.946 24 H 0.046 0.954 25 H 0.103 0.897 26 H 0.091 0.909 27 H 0.121 0.879 28 H 0.281 0.719 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.512 0.043 -3.159 7.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.042 3.958 4 C -0.082 4.082 5 C -0.226 4.226 6 C -0.128 4.128 7 C -0.172 4.172 8 C 0.096 3.904 9 C -0.474 4.474 10 H 0.098 0.902 11 C -0.143 4.143 12 N -0.415 5.415 13 Si 0.733 3.267 14 H -0.195 1.195 15 H -0.200 1.200 16 H -0.184 1.184 17 C -0.076 4.076 18 O -0.239 6.239 19 C -0.064 4.064 20 H 0.099 0.901 21 H 0.055 0.945 22 H 0.054 0.946 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.121 0.879 26 H 0.109 0.891 27 H 0.138 0.862 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -6.241 -0.097 -2.855 6.864 hybrid contribution 0.426 0.716 -0.328 0.895 sum -5.815 0.619 -3.184 6.659 Atomic orbital electron populations 1.22667 0.82279 1.02054 0.99517 1.87911 1.18452 1.28678 1.95336 1.21078 0.92115 0.83267 0.99385 1.19423 0.91677 0.93917 1.03168 1.20098 0.93942 0.95329 1.13271 1.20500 0.93610 0.97347 1.01307 1.21022 0.99633 0.91294 1.05225 1.17796 0.89911 0.93709 0.88944 1.19425 0.96310 0.96863 1.34785 0.90163 1.25940 0.99109 0.96620 0.92661 1.69849 1.20127 1.29678 1.21843 0.86286 0.79295 0.80949 0.80145 1.19479 1.20018 1.18443 1.18484 0.90352 0.82103 1.16619 1.85982 1.79889 1.31504 1.26572 1.22817 0.99184 0.96818 0.87592 0.90134 0.94464 0.94612 0.92782 0.93623 0.87924 0.89092 0.86158 0.90788 0.90951 0.94113 0.95593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.54 16 2 O -0.38 -7.17 9.17 -35.23 -0.32 -7.49 16 3 C 0.12 2.33 5.80 36.00 0.21 2.54 16 4 C -0.08 -1.93 5.89 -104.52 -0.62 -2.55 16 5 C -0.21 -4.91 9.38 -39.34 -0.37 -5.28 16 6 C -0.11 -2.63 9.97 -40.00 -0.40 -3.03 16 7 C -0.15 -4.01 8.64 -39.28 -0.34 -4.35 16 8 C 0.10 2.70 5.58 -106.68 -0.60 2.11 16 9 C -0.44 -11.94 8.72 -37.84 -0.33 -12.27 16 10 H 0.08 2.10 7.04 -52.49 -0.37 1.73 16 11 C 0.07 1.89 5.14 -17.33 -0.09 1.80 16 12 N -0.79 -20.50 10.98 55.55 0.61 -19.89 16 13 Si 0.91 18.72 29.60 -169.99 -5.03 13.69 16 14 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 15 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 16 H -0.26 -5.31 7.11 56.52 0.40 -4.90 16 17 C -0.03 -0.79 5.73 -38.33 -0.22 -1.01 16 18 O -0.32 -7.66 9.16 -18.63 -0.17 -7.83 16 19 C 0.03 0.59 10.95 101.05 1.11 1.70 16 20 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 21 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 22 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 24 H 0.05 0.84 7.34 -51.93 -0.38 0.46 16 25 H 0.10 2.29 6.98 -52.49 -0.37 1.92 16 26 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 27 H 0.12 3.21 6.18 -52.48 -0.32 2.89 16 28 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.04 0.79 7.70 -51.93 -0.40 0.39 16 31 H 0.03 0.45 7.34 -51.93 -0.38 0.07 16 LS Contribution 266.66 15.07 4.02 4.02 Total: -1.00 -29.00 266.66 -5.32 -34.32 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -3.89 Total: 1.99 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -0.53 Total: -18.81 kcal Atomic # 7 Polarization: -20.50 SS G_CDS: 0.61 Total: -19.89 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.49 Total: -15.31 kcal Atomic # 14 Polarization: 18.72 SS G_CDS: -5.03 Total: 13.69 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.00 -5.32 -34.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258113383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.974 kcal (2) G-P(sol) polarization free energy of solvation -29.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds