Wall clock time and date at job start Thu Apr 9 2020 14:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42900 * 113.99750 * 2 1 4 4 C 1.50695 * 109.46874 * 180.02562 * 3 2 1 5 5 C 1.38359 * 119.97673 * 0.02562 * 4 3 2 6 6 C 1.38774 * 120.59325 * 180.02562 * 5 4 3 7 7 C 1.36528 * 120.53719 * 359.95710 * 6 5 4 8 8 C 1.40684 * 119.93118 * 0.02629 * 7 6 5 9 9 C 1.41159 * 120.28936 * 179.97438 * 8 7 6 10 10 H 1.07999 * 119.99974 * 155.10203 * 9 8 7 11 11 C 1.39933 * 120.00011 * 335.09972 * 9 8 7 12 12 N 1.30866 * 119.99866 * 342.32040 * 11 9 8 13 13 Si 1.86797 * 120.00157 * 162.32533 * 11 9 8 14 14 H 1.48493 * 109.47413 * 94.65391 * 13 11 9 15 15 H 1.48496 * 109.47037 * 214.65670 * 13 11 9 16 16 H 1.48504 * 109.46921 * 334.65137 * 13 11 9 17 17 C 1.38406 * 119.97682 * 179.97438 * 4 3 2 18 18 O 1.35643 * 120.26563 * 0.27805 * 17 4 3 19 19 C 1.42897 * 117.00126 * 269.72329 * 18 17 4 20 20 H 1.09003 * 109.47319 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47104 * 300.00105 * 1 2 3 22 22 H 1.08993 * 109.47480 * 60.00489 * 1 2 3 23 23 H 1.08996 * 109.47520 * 60.00031 * 3 2 1 24 24 H 1.08997 * 109.46636 * 299.99532 * 3 2 1 25 25 H 1.07998 * 119.70274 * 0.02562 * 5 4 3 26 26 H 1.07996 * 119.73270 * 179.97438 * 6 5 4 27 27 H 1.08005 * 120.03289 * 180.02562 * 7 6 5 28 28 H 0.97001 * 120.00176 * 180.02562 * 12 11 9 29 29 H 1.09000 * 109.47341 * 179.97438 * 19 18 17 30 30 H 1.08995 * 109.46656 * 300.00042 * 19 18 17 31 31 H 1.09000 * 109.47394 * 59.99162 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 -0.0006 5 6 4.1069 -0.0628 -0.0016 6 6 5.4891 -0.1873 -0.0017 7 6 6.2855 0.9217 -0.0016 8 6 5.7046 2.2030 -0.0010 9 6 6.5208 3.3547 -0.0004 10 1 6.1408 4.2860 -0.3936 11 6 7.8222 3.2897 0.5098 12 7 8.1713 2.2967 1.2874 13 14 9.0610 4.6204 0.0811 14 1 9.0665 5.6538 1.1475 15 1 10.4140 4.0191 -0.0324 16 1 8.6874 5.2462 -1.2127 17 6 4.2965 2.3271 -0.0013 18 8 3.7183 3.5541 0.0043 19 6 3.4417 4.1468 -1.2662 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5137 -0.8899 23 1 1.6886 1.8464 0.8899 24 1 1.6886 1.8463 -0.8900 25 1 3.4898 -0.9491 -0.0024 26 1 5.9384 -1.1693 -0.0021 27 1 7.3603 0.8153 -0.0021 28 1 9.0733 2.2518 1.6414 29 1 2.9807 5.1234 -1.1189 30 1 4.3716 4.2636 -1.8226 31 1 2.7615 3.5050 -1.8262 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258113383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:37 Heat of formation + Delta-G solvation = -85.924382 kcal Electronic energy + Delta-G solvation = -15105.809316 eV Core-core repulsion = 12544.729922 eV Total energy + Delta-G solvation = -2561.079394 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.51161 -38.62303 -37.60392 -35.60508 -32.33730 -31.17224 -28.46998 -27.45813 -26.85162 -25.91924 -22.45189 -22.03726 -19.03216 -18.15163 -17.57573 -16.83391 -16.75543 -16.38463 -15.99966 -15.95823 -15.15440 -14.64255 -14.32529 -13.87562 -13.71632 -13.29413 -13.10411 -12.74300 -12.59760 -12.46803 -12.15818 -12.10576 -11.76539 -11.38827 -11.05213 -10.70856 -10.43677 -9.30498 -9.10353 -8.64846 -6.32670 0.83282 0.94952 1.37810 1.49009 1.54312 2.20175 2.68637 2.88727 3.21840 3.68987 4.12202 4.31460 4.47237 4.53212 4.57265 4.61406 4.64796 4.67194 4.80006 4.84120 4.90839 5.10127 5.27943 5.33673 5.52237 5.80606 5.99522 6.07424 6.28626 6.38846 6.50626 6.79119 6.87539 7.25877 8.31118 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.041100 B = 0.008350 C = 0.007172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.094243 B = 3352.602555 C = 3902.999203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.408 6.408 3 C 0.127 3.873 4 C -0.092 4.092 5 C -0.210 4.210 6 C -0.112 4.112 7 C -0.177 4.177 8 C 0.066 3.934 9 C -0.478 4.478 10 H 0.075 0.925 11 C 0.034 3.966 12 N -0.822 5.822 13 Si 0.984 3.016 14 H -0.264 1.264 15 H -0.264 1.264 16 H -0.258 1.258 17 C -0.040 4.040 18 O -0.341 6.341 19 C 0.029 3.971 20 H 0.102 0.898 21 H 0.048 0.952 22 H 0.051 0.949 23 H 0.057 0.943 24 H 0.061 0.939 25 H 0.119 0.881 26 H 0.115 0.885 27 H 0.107 0.893 28 H 0.290 0.710 29 H 0.107 0.893 30 H 0.028 0.972 31 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.525 0.439 -3.623 8.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.327 6.327 3 C 0.051 3.949 4 C -0.092 4.092 5 C -0.229 4.229 6 C -0.130 4.130 7 C -0.197 4.197 8 C 0.063 3.937 9 C -0.507 4.507 10 H 0.094 0.906 11 C -0.181 4.181 12 N -0.448 5.448 13 Si 0.804 3.196 14 H -0.188 1.188 15 H -0.188 1.188 16 H -0.182 1.182 17 C -0.085 4.085 18 O -0.258 6.258 19 C -0.065 4.065 20 H 0.121 0.879 21 H 0.067 0.933 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.137 0.863 26 H 0.133 0.867 27 H 0.125 0.875 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.047 0.953 31 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -7.281 0.286 -3.323 8.009 hybrid contribution 0.578 0.543 -0.183 0.814 sum -6.703 0.829 -3.506 7.610 Atomic orbital electron populations 1.22967 0.79402 1.04019 1.00835 1.87854 1.21517 1.27786 1.95555 1.20906 0.89587 0.84244 1.00172 1.19843 0.94226 0.93296 1.01863 1.20357 0.93865 0.96098 1.12570 1.20773 0.94006 0.97860 1.00347 1.20995 0.99276 0.92024 1.07379 1.18204 0.91244 0.94313 0.89909 1.19615 0.97836 0.96792 1.36492 0.90644 1.26806 1.00427 0.99057 0.91853 1.69894 1.21028 1.31444 1.22436 0.85176 0.76779 0.77836 0.79831 1.18828 1.18787 1.18160 1.18660 0.90215 0.83375 1.16243 1.85886 1.79650 1.31033 1.29209 1.23020 0.99208 0.98495 0.85810 0.87945 0.93346 0.93037 0.92489 0.92090 0.86334 0.86717 0.87513 0.89963 0.87432 0.95321 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 11.01 113.37 1.25 1.80 16 2 O -0.41 -14.20 9.17 -148.98 -1.37 -15.57 16 3 C 0.13 4.79 5.80 71.23 0.41 5.21 16 4 C -0.09 -4.30 5.89 -19.80 -0.12 -4.42 16 5 C -0.21 -9.81 9.38 22.43 0.21 -9.60 16 6 C -0.11 -5.40 9.97 22.00 0.22 -5.18 16 7 C -0.18 -9.59 8.64 22.47 0.19 -9.40 16 8 C 0.07 3.69 5.58 -21.20 -0.12 3.57 16 9 C -0.48 -26.37 8.72 23.40 0.20 -26.17 16 10 H 0.08 4.06 7.04 -2.91 -0.02 4.04 16 11 C 0.03 1.72 5.14 85.25 0.44 2.16 16 12 N -0.82 -43.62 10.98 21.83 0.24 -43.38 16 13 Si 0.98 38.57 29.60 68.60 2.03 40.60 16 14 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 15 H -0.26 -9.74 7.11 99.48 0.71 -9.03 16 16 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 17 C -0.04 -2.08 5.73 23.08 0.13 -1.94 16 18 O -0.34 -16.05 9.16 -89.57 -0.82 -16.87 16 19 C 0.03 1.07 10.95 113.37 1.24 2.31 16 20 H 0.10 1.94 8.14 -2.39 -0.02 1.93 16 21 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 23 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 24 H 0.06 2.10 7.34 -2.39 -0.02 2.08 16 25 H 0.12 5.10 6.98 -2.91 -0.02 5.08 16 26 H 0.11 4.84 8.06 -2.91 -0.02 4.82 16 27 H 0.11 5.94 6.18 -2.91 -0.02 5.92 16 28 H 0.29 13.79 8.30 -92.71 -0.77 13.02 16 29 H 0.11 3.12 8.14 -2.39 -0.02 3.11 16 30 H 0.03 1.10 7.70 -2.39 -0.02 1.08 16 31 H 0.04 1.38 7.34 -2.39 -0.02 1.36 16 Total: -1.00 -63.08 266.66 5.27 -57.81 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 1.12 Total: 19.07 kcal Atomic # 6 Polarization: -45.73 SS G_CDS: 4.07 Total: -41.66 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.24 Total: -43.38 kcal Atomic # 8 Polarization: -30.25 SS G_CDS: -2.19 Total: -32.44 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 2.03 Total: 40.60 kcal Total: -63.08 5.27 -57.81 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258113383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.115 kcal (2) G-P(sol) polarization free energy of solvation -63.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds