Wall clock time and date at job start Thu Apr 9 2020 14:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 113.99660 * 2 1 4 4 C 1.50698 * 109.46893 * 179.97438 * 3 2 1 5 5 C 1.36456 * 119.90818 * 359.72739 * 4 3 2 6 6 C 1.40816 * 119.81055 * 179.75613 * 5 4 3 7 7 C 1.41217 * 120.18114 * 180.25112 * 6 5 4 8 8 H 1.07999 * 119.99719 * 330.43108 * 7 6 5 9 9 C 1.39884 * 120.00067 * 150.43089 * 7 6 5 10 10 N 1.30885 * 119.99513 * 161.71648 * 9 7 6 11 11 Si 1.86795 * 120.00404 * 341.71604 * 9 7 6 12 12 H 1.48499 * 109.47365 * 95.41398 * 11 9 7 13 13 H 1.48499 * 109.47304 * 215.41963 * 11 9 7 14 14 H 1.48500 * 109.46881 * 335.41483 * 11 9 7 15 15 C 1.40859 * 119.64298 * 0.50994 * 6 5 4 16 16 C 1.36425 * 119.80683 * 359.73735 * 15 6 5 17 17 C 1.39291 * 119.90777 * 179.97438 * 4 3 2 18 18 O 1.35678 * 119.81783 * 0.02877 * 17 4 3 19 19 C 1.42900 * 117.00561 * 179.97438 * 18 17 4 20 20 H 1.08998 * 109.47465 * 299.99997 * 1 2 3 21 21 H 1.08998 * 109.47442 * 60.00662 * 1 2 3 22 22 H 1.09003 * 109.46860 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.46896 * 299.99798 * 3 2 1 24 24 H 1.09001 * 109.47286 * 60.00027 * 3 2 1 25 25 H 1.07998 * 120.09514 * 359.97438 * 5 4 3 26 26 H 0.97004 * 119.99758 * 180.02562 * 10 9 7 27 27 H 1.07996 * 120.09693 * 179.71050 * 15 6 5 28 28 H 1.07996 * 119.90188 * 179.97438 * 16 15 6 29 29 H 1.09005 * 109.46622 * 300.00476 * 19 18 17 30 30 H 1.09000 * 109.47050 * 59.99124 * 19 18 17 31 31 H 1.08997 * 109.47385 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5124 1.1866 0.0006 5 6 4.0973 -0.0463 0.0067 6 6 5.5012 -0.1551 0.0021 7 6 6.1148 -1.4270 0.0030 8 1 5.6182 -2.2657 0.4683 9 6 7.3656 -1.6007 -0.5987 10 7 8.0941 -2.6472 -0.3035 11 14 7.9961 -0.3391 -1.8235 12 1 8.8725 0.6347 -1.1243 13 1 8.7704 -1.0266 -2.8880 14 1 6.8466 0.3775 -2.4320 15 6 6.2904 1.0117 0.0021 16 6 5.6899 2.2366 0.0012 17 6 4.3001 2.3354 0.0002 18 8 3.7107 3.5575 -0.0002 19 6 4.5756 4.6950 0.0000 20 1 -0.3634 0.5138 0.8899 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.6885 1.8463 -0.8900 24 1 1.6885 1.8464 0.8900 25 1 3.4852 -0.9361 0.0115 26 1 8.9616 -2.7675 -0.7205 27 1 7.3678 0.9368 0.0033 28 1 6.2934 3.1322 0.0016 29 1 5.2043 4.6732 0.8902 30 1 5.2050 4.6730 -0.8897 31 1 3.9775 5.6062 -0.0009 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258116053.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:39 Heat of formation + Delta-G solvation = -85.586097 kcal Electronic energy + Delta-G solvation = -14976.081702 eV Core-core repulsion = 12415.016977 eV Total energy + Delta-G solvation = -2561.064725 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.85073 -38.79848 -38.07727 -35.31205 -32.98433 -31.59013 -28.50172 -28.08010 -26.59904 -25.86563 -22.43243 -22.26675 -19.16868 -18.83940 -17.49230 -17.07494 -16.85591 -16.30491 -16.21732 -15.99453 -15.25355 -14.87754 -14.55618 -14.07048 -13.95405 -13.57279 -13.33927 -12.73168 -12.62171 -12.54360 -12.25833 -12.07735 -11.77282 -11.63252 -11.31354 -10.91986 -10.68927 -9.55969 -8.95419 -8.86074 -6.37849 0.71660 0.75092 1.24676 1.39382 1.48611 2.13386 2.55780 2.71617 2.90321 3.43187 4.03459 4.17669 4.35659 4.45578 4.49635 4.51894 4.53895 4.62795 4.67148 4.78948 4.84934 4.90518 4.98959 5.19565 5.32844 5.60342 5.69082 5.88837 6.04679 6.32854 6.38664 6.60033 6.81380 6.90942 8.23465 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.024270 B = 0.010348 C = 0.007664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.406424 B = 2705.148829 C = 3652.748410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.126 3.874 4 C -0.093 4.093 5 C -0.162 4.162 6 C 0.046 3.954 7 C -0.485 4.485 8 H 0.053 0.947 9 C 0.046 3.954 10 N -0.855 5.855 11 Si 0.964 3.036 12 H -0.255 1.255 13 H -0.276 1.276 14 H -0.256 1.256 15 C -0.216 4.216 16 C -0.156 4.156 17 C 0.018 3.982 18 O -0.334 6.334 19 C 0.024 3.976 20 H 0.053 0.947 21 H 0.053 0.947 22 H 0.095 0.905 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.109 0.891 26 H 0.292 0.708 27 H 0.103 0.897 28 H 0.138 0.862 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.019 12.200 -1.506 14.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.050 3.950 4 C -0.093 4.093 5 C -0.181 4.181 6 C 0.044 3.956 7 C -0.515 4.515 8 H 0.071 0.929 9 C -0.167 4.167 10 N -0.483 5.483 11 Si 0.787 3.213 12 H -0.180 1.180 13 H -0.203 1.203 14 H -0.180 1.180 15 C -0.236 4.236 16 C -0.175 4.175 17 C -0.027 4.027 18 O -0.249 6.249 19 C -0.071 4.071 20 H 0.071 0.929 21 H 0.071 0.929 22 H 0.114 0.886 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.127 0.873 26 H 0.103 0.897 27 H 0.121 0.879 28 H 0.156 0.844 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -7.910 11.877 -1.503 14.349 hybrid contribution 0.662 -0.007 -0.253 0.709 sum -7.247 11.870 -1.756 14.018 Atomic orbital electron populations 1.22945 0.79303 1.03793 1.01037 1.87901 1.21663 1.28286 1.95608 1.20939 0.89009 0.84128 1.00923 1.18785 0.94625 0.91182 1.04750 1.20579 0.93582 0.96266 1.07716 1.17872 0.92531 0.92963 0.92228 1.19331 1.02298 0.95439 1.34402 0.92915 1.26783 0.94992 0.97637 0.97336 1.69758 1.11225 1.29577 1.37723 0.85514 0.79085 0.78377 0.78302 1.18005 1.20301 1.18006 1.20746 0.98440 0.92737 1.11650 1.20774 0.93348 0.98041 1.05336 1.18359 0.90665 0.84323 1.09320 1.85822 1.36314 1.12279 1.90519 1.23166 0.95784 0.86844 1.01299 0.92856 0.92871 0.88633 0.91523 0.91473 0.87281 0.89749 0.87896 0.84411 0.92862 0.93000 0.86060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 11.01 113.37 1.25 1.85 16 2 O -0.41 -14.89 9.15 -148.98 -1.36 -16.25 16 3 C 0.13 4.45 5.79 71.24 0.41 4.86 16 4 C -0.09 -4.04 5.86 -20.03 -0.12 -4.16 16 5 C -0.16 -8.12 9.08 22.48 0.20 -7.91 16 6 C 0.05 2.49 5.10 -21.28 -0.11 2.38 16 7 C -0.48 -28.50 9.56 23.40 0.22 -28.28 16 8 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 9 C 0.05 2.54 5.40 85.23 0.46 3.00 16 10 N -0.86 -48.50 13.93 21.82 0.30 -48.20 16 11 Si 0.96 43.90 24.51 68.60 1.68 45.58 16 12 H -0.25 -10.77 6.70 99.48 0.67 -10.11 16 13 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 14 H -0.26 -11.99 6.87 99.48 0.68 -11.31 16 15 C -0.22 -10.50 7.12 22.49 0.16 -10.34 16 16 C -0.16 -6.52 8.96 22.11 0.20 -6.32 16 17 C 0.02 0.72 6.69 22.79 0.15 0.87 16 18 O -0.33 -11.28 9.90 -89.96 -0.89 -12.17 16 19 C 0.02 0.56 9.80 113.37 1.11 1.68 16 20 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 21 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 22 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 25 H 0.11 5.57 6.96 -2.91 -0.02 5.55 16 26 H 0.29 14.84 8.30 -92.71 -0.77 14.07 16 27 H 0.10 4.92 4.73 -2.91 -0.01 4.91 16 28 H 0.14 4.69 6.27 -2.91 -0.02 4.67 16 29 H 0.05 1.21 7.65 -2.38 -0.02 1.19 16 30 H 0.05 1.18 7.65 -2.39 -0.02 1.16 16 31 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 Total: -1.00 -65.34 261.00 4.73 -60.60 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 1.06 Total: 12.80 kcal Atomic # 6 Polarization: -46.31 SS G_CDS: 3.94 Total: -42.37 kcal Atomic # 7 Polarization: -48.50 SS G_CDS: 0.30 Total: -48.20 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -2.25 Total: -28.42 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.68 Total: 45.58 kcal Total: -65.34 4.73 -60.60 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258116053.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.985 kcal (2) G-P(sol) polarization free energy of solvation -65.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds