Wall clock time and date at job start Thu Apr 9 2020 14:15:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 119.99747 * 2 1 4 4 H 1.48494 * 109.47484 * 270.00120 * 3 2 1 5 5 H 1.48500 * 109.47299 * 30.00384 * 3 2 1 6 6 H 1.48509 * 109.46812 * 150.00320 * 3 2 1 7 7 C 1.37882 * 120.00401 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00311 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99486 * 359.97438 * 7 2 1 10 10 H 1.08989 * 109.52750 * 299.87542 * 9 7 2 11 11 C 1.53116 * 109.52253 * 60.00751 * 9 7 2 12 12 C 1.53032 * 109.27946 * 177.61811 * 11 9 7 13 13 N 1.46847 * 109.52508 * 300.81875 * 12 11 9 14 14 C 1.46843 * 111.19888 * 61.74029 * 13 12 11 15 15 H 1.08994 * 109.46341 * 178.24124 * 14 13 12 16 16 C 1.50701 * 109.45181 * 58.27046 * 14 13 12 17 17 C 1.35454 * 126.77942 * 131.28339 * 16 14 13 18 18 C 1.41380 * 103.98677 * 179.97438 * 17 16 14 19 19 N 1.30179 * 106.39758 * 0.02562 * 18 17 16 20 20 O 1.20931 * 111.60005 * 359.72331 * 19 18 17 21 21 C 1.53041 * 109.52330 * 298.26002 * 14 13 12 22 22 H 0.96997 * 120.00412 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.50741 * 57.67602 * 11 9 7 24 24 H 1.08998 * 109.53686 * 297.58169 * 11 9 7 25 25 H 1.08997 * 109.46685 * 60.83858 * 12 11 9 26 26 H 1.09008 * 109.46613 * 180.80233 * 12 11 9 27 27 H 1.00896 * 111.00074 * 185.84058 * 13 12 11 28 28 H 1.07995 * 128.00370 * 359.97336 * 17 16 14 29 29 H 1.07996 * 126.79783 * 179.97438 * 18 17 16 30 30 H 1.08994 * 109.50540 * 299.23723 * 21 14 13 31 31 H 1.09001 * 109.53377 * 179.13279 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 1 0.6262 -2.5590 0.8904 11 6 0.3700 -2.5813 -1.2501 12 6 -0.3469 -3.9330 -1.2749 13 7 0.6458 -5.0150 -1.2822 14 6 1.4728 -4.9852 -0.0691 15 1 2.1772 -5.8167 -0.0892 16 6 0.5878 -5.1060 1.1447 17 6 0.7590 -5.9470 2.1927 18 6 -0.3329 -5.6594 3.0434 19 7 -1.0200 -4.7228 2.4558 20 8 -0.5214 -4.3990 1.4027 21 6 2.2441 -3.6647 -0.0084 22 1 -0.4850 0.8400 0.0004 23 1 0.9910 -2.4823 -2.1405 24 1 -0.3672 -1.7786 -1.2297 25 1 -0.9784 -4.0255 -0.3913 26 1 -0.9642 -4.0005 -2.1708 27 1 0.2006 -5.9135 -1.3943 28 1 1.5471 -6.6698 2.3434 29 1 -0.5538 -6.1252 3.9924 30 1 2.8946 -3.5828 -0.8791 31 1 2.8462 -3.6358 0.8998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259725186.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:05 Heat of formation + Delta-G solvation = 60.183769 kcal Electronic energy + Delta-G solvation = -15774.966788 eV Core-core repulsion = 13252.515870 eV Total energy + Delta-G solvation = -2522.450918 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.50376 -38.11529 -33.66251 -33.31128 -31.51038 -30.56089 -29.12195 -25.39988 -23.25896 -22.80205 -21.73457 -20.81858 -18.96655 -17.18674 -16.59457 -16.20685 -15.54429 -14.93137 -14.43876 -13.49504 -13.37535 -13.04858 -12.73048 -12.42656 -12.28765 -11.69651 -10.97733 -10.93131 -10.78251 -10.68729 -10.42064 -10.07656 -9.98017 -9.43351 -9.23318 -8.90765 -8.67236 -8.25223 -8.06413 -5.92765 -3.99034 1.89788 2.62256 3.33739 3.40582 3.43261 3.52584 4.47732 4.66818 4.73955 4.89427 5.36835 5.40353 5.49701 5.71802 5.85238 5.89811 6.08149 6.33206 6.34154 6.50449 6.62923 6.74950 6.99339 7.10992 7.45478 7.50135 7.76089 7.85579 8.08464 8.19067 8.49675 8.70025 9.04528 9.65031 11.12954 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.034991 B = 0.009497 C = 0.008828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.019658 B = 2947.620555 C = 3170.796678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.062 3.938 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.046 3.954 10 H 0.030 0.970 11 C -0.104 4.104 12 C 0.043 3.957 13 N -0.672 5.672 14 C 0.165 3.835 15 H 0.100 0.900 16 C -0.036 4.036 17 C -0.253 4.253 18 C -0.023 4.023 19 N -0.376 5.376 20 O 0.124 5.876 21 C -0.104 4.104 22 H 0.259 0.741 23 H 0.043 0.957 24 H 0.094 0.906 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.330 0.670 28 H 0.165 0.835 29 H 0.183 0.817 30 H 0.071 0.929 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.097 -11.360 0.956 11.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.552 4.552 8 H 0.072 0.928 9 C 0.027 3.973 10 H 0.048 0.952 11 C -0.142 4.142 12 C -0.085 4.085 13 N -0.300 5.300 14 C 0.053 3.947 15 H 0.118 0.882 16 C -0.102 4.102 17 C -0.276 4.276 18 C -0.201 4.201 19 N -0.079 5.079 20 O 0.058 5.942 21 C -0.142 4.142 22 H 0.069 0.931 23 H 0.061 0.939 24 H 0.112 0.888 25 H 0.059 0.941 26 H 0.078 0.922 27 H 0.146 0.854 28 H 0.183 0.817 29 H 0.200 0.800 30 H 0.090 0.910 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.254 -10.185 0.880 10.226 hybrid contribution 0.492 -0.047 0.909 1.034 sum 0.746 -10.232 1.789 10.414 Atomic orbital electron populations 1.69882 1.05804 1.26290 1.50621 1.24960 0.94821 0.98948 0.95200 0.86655 0.79871 0.83780 0.78035 1.20709 1.21350 1.20034 1.21153 0.92796 0.90605 1.50602 0.92763 1.18751 0.92544 0.91358 0.94615 0.95233 1.21650 1.00203 0.93236 0.99141 1.22456 0.93132 0.93358 0.99594 1.60563 1.27077 1.06859 1.35503 1.20674 0.91875 1.01525 0.80644 0.88196 1.26151 0.90883 0.92598 1.00588 1.22546 1.03043 1.06196 0.95767 1.24926 0.94522 0.97988 1.02656 1.73881 1.22255 1.15035 0.96756 1.85162 1.31885 1.48610 1.28539 1.21812 0.98682 0.92545 1.01141 0.93070 0.93855 0.88768 0.94058 0.92236 0.85358 0.81708 0.79962 0.91016 0.92737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.64 11.35 55.43 0.63 -25.01 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.51 -14.10 8.57 -34.44 -0.30 -14.40 16 8 H 0.05 1.47 7.75 -52.49 -0.41 1.06 16 9 C 0.05 1.13 1.85 -91.65 -0.17 0.96 16 10 H 0.03 0.82 6.15 -51.94 -0.32 0.50 16 11 C -0.10 -2.45 5.12 -26.65 -0.14 -2.58 16 12 C 0.04 0.83 6.25 -3.84 -0.02 0.81 16 13 N -0.67 -11.15 6.64 -107.99 -0.72 -11.87 16 14 C 0.16 2.73 3.58 -68.87 -0.25 2.49 16 15 H 0.10 1.34 8.13 -51.93 -0.42 0.92 16 16 C -0.04 -0.63 5.53 -35.30 -0.20 -0.82 16 17 C -0.25 -3.74 11.09 -39.38 -0.44 -4.18 16 18 C -0.02 -0.35 12.17 -17.06 -0.21 -0.56 16 19 N -0.38 -7.37 12.07 30.36 0.37 -7.00 16 20 O 0.12 2.53 6.57 17.17 0.11 2.64 16 21 C -0.10 -2.09 4.83 -26.64 -0.13 -2.22 16 22 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 23 H 0.04 1.03 8.14 -51.93 -0.42 0.61 16 24 H 0.09 2.50 6.15 -51.93 -0.32 2.18 16 25 H 0.04 0.85 4.97 -51.93 -0.26 0.60 16 26 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 27 H 0.33 4.57 8.89 -39.29 -0.35 4.22 16 28 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 29 H 0.18 2.12 8.06 -52.49 -0.42 1.70 16 30 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 250.81 15.07 3.78 3.78 Total: -1.00 -30.05 250.81 -6.53 -36.58 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -3.75 Total: 3.29 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -1.93 Total: -18.88 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: 0.28 Total: -43.89 kcal Atomic # 8 Polarization: 2.53 SS G_CDS: 0.11 Total: 2.64 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -30.05 -6.53 -36.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259725186.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.764 kcal (2) G-P(sol) polarization free energy of solvation -30.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds