Wall clock time and date at job start Thu Apr 9 2020 14:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34117 * 126.59067 * 2 1 4 4 N 1.39700 * 136.92106 * 0.04490 * 3 2 1 5 5 C 1.46505 * 125.38233 * 0.02562 * 4 3 2 6 6 C 1.46486 * 109.23506 * 179.97438 * 4 3 2 7 7 C 1.53550 * 105.05141 * 359.97438 * 6 4 3 8 8 N 1.38190 * 111.54278 * 180.02562 * 3 2 1 9 9 C 1.35461 * 111.86961 * 0.02562 * 8 3 2 10 10 O 1.21281 * 127.00526 * 180.02562 * 9 8 3 11 11 C 1.51117 * 126.58543 * 180.02562 * 2 1 3 12 12 H 1.09003 * 110.69236 * 298.60253 * 11 2 1 13 13 C 1.50706 * 110.56329 * 61.39223 * 11 2 1 14 14 H 1.08005 * 120.00138 * 355.80524 * 13 11 2 15 15 C 1.37871 * 119.99722 * 175.80404 * 13 11 2 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00073 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46845 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47399 * 119.99815 * 17 15 13 20 20 H 1.48498 * 109.47295 * 240.00422 * 17 15 13 21 21 H 1.08998 * 109.46963 * 269.95653 * 1 2 3 22 22 H 1.08995 * 109.46799 * 29.95114 * 1 2 3 23 23 H 1.08996 * 109.47462 * 149.95489 * 1 2 3 24 24 H 1.09007 * 109.46711 * 90.00192 * 5 4 3 25 25 H 1.08991 * 109.47118 * 210.00431 * 5 4 3 26 26 H 1.08999 * 109.47185 * 330.00820 * 5 4 3 27 27 H 1.09003 * 110.32941 * 118.89048 * 6 4 3 28 28 H 1.09007 * 110.32532 * 241.10407 * 6 4 3 29 29 H 1.09003 * 110.33796 * 241.12511 * 7 6 4 30 30 H 1.08999 * 110.33325 * 118.88327 * 7 6 4 31 31 H 0.97000 * 119.99651 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3065 1.0768 0.0000 4 7 2.1486 2.4649 0.0007 5 6 0.8660 3.1728 0.0024 6 6 3.4683 3.1007 0.0008 7 6 4.4712 1.9379 0.0007 8 7 3.6410 0.7181 -0.0006 9 6 3.8019 -0.6270 -0.0016 10 8 4.8503 -1.2367 -0.0018 11 6 2.4077 -1.2134 -0.0005 12 1 2.2453 -1.8141 0.8945 13 6 2.1807 -2.0406 -1.2397 14 1 1.4046 -1.7649 -1.9384 15 6 2.9638 -3.1493 -1.4814 16 7 3.9086 -3.4853 -0.6304 17 14 2.6821 -4.1750 -3.0169 18 1 1.5676 -3.5903 -3.8052 19 1 3.9182 -4.1842 -3.8399 20 1 2.3367 -5.5656 -2.6268 21 1 -0.3633 -0.0008 1.0277 22 1 -0.3633 0.8904 -0.5131 23 1 -0.3634 -0.8895 -0.5145 24 1 0.5490 3.3479 1.0306 25 1 0.9773 4.1276 -0.5112 26 1 0.1173 2.5693 -0.5107 27 1 3.5950 3.7104 -0.8938 28 1 3.5952 3.7096 0.8961 29 1 5.0923 1.9732 0.8957 30 1 5.0924 1.9736 -0.8942 31 1 4.0542 -2.9533 0.1675 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259759804.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:15 Heat of formation + Delta-G solvation = 24.622103 kcal Electronic energy + Delta-G solvation = -15658.095824 eV Core-core repulsion = 13134.102837 eV Total energy + Delta-G solvation = -2523.992988 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.68315 -37.32062 -34.77861 -33.45944 -32.18307 -29.22516 -27.51437 -26.90568 -23.96120 -23.44102 -21.54843 -19.72712 -18.21569 -16.73632 -16.01410 -15.47919 -14.89075 -14.41772 -13.98944 -13.70433 -13.55046 -13.27338 -12.69316 -12.44118 -12.20725 -11.91565 -11.80692 -11.60776 -11.39975 -10.92647 -10.71512 -10.60816 -10.12282 -9.90953 -8.89290 -8.69206 -8.28290 -8.16927 -6.36301 -6.07920 -3.98868 2.96231 3.03448 3.50260 3.55478 3.67969 3.94121 3.99586 4.63176 4.65915 5.06036 5.08257 5.44050 5.44493 5.54986 5.61134 5.68149 5.90595 5.93773 6.02913 6.17977 6.40415 6.55696 6.65331 6.87085 7.07795 7.27971 7.47937 7.94059 8.15990 8.35019 8.55123 8.98253 9.23077 9.74044 11.20047 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.034973 B = 0.010371 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.433823 B = 2699.072088 C = 3162.468109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.244 4.244 3 C 0.310 3.690 4 N -0.644 5.644 5 C 0.129 3.871 6 C 0.120 3.880 7 C 0.099 3.901 8 N -0.591 5.591 9 C 0.531 3.469 10 O -0.500 6.500 11 C 0.072 3.928 12 H 0.057 0.943 13 C -0.592 4.592 14 H 0.061 0.939 15 C 0.019 3.981 16 N -0.880 5.880 17 Si 1.075 2.925 18 H -0.289 1.289 19 H -0.289 1.289 20 H -0.286 1.286 21 H 0.044 0.956 22 H 0.042 0.958 23 H 0.066 0.934 24 H 0.041 0.959 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.214 13.490 1.467 14.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.257 4.257 3 C 0.118 3.882 4 N -0.366 5.366 5 C -0.013 4.013 6 C -0.004 4.004 7 C -0.023 4.023 8 N -0.322 5.322 9 C 0.325 3.675 10 O -0.371 6.371 11 C 0.050 3.950 12 H 0.075 0.925 13 C -0.630 4.630 14 H 0.080 0.920 15 C -0.191 4.191 16 N -0.516 5.516 17 Si 0.904 3.096 18 H -0.215 1.215 19 H -0.216 1.216 20 H -0.212 1.212 21 H 0.062 0.938 22 H 0.061 0.939 23 H 0.085 0.915 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.856 11.928 0.686 12.554 hybrid contribution -0.231 1.773 0.701 1.921 sum -4.086 13.701 1.387 14.365 Atomic orbital electron populations 1.19905 0.90734 1.01039 0.99704 1.21076 0.94676 0.90667 1.19246 1.18062 0.85421 0.83445 1.01241 1.46051 1.04483 1.01460 1.84605 1.21318 0.83462 0.95940 1.00587 1.21909 0.82255 0.95080 1.01160 1.22176 0.94285 0.83456 1.02417 1.47755 1.06091 1.06379 1.71936 1.23051 0.94159 0.77651 0.72668 1.90625 1.33687 1.63510 1.49312 1.18309 0.84525 0.92142 1.00031 0.92544 1.21560 1.22049 1.11596 1.07757 0.92048 1.25891 0.93418 0.96693 1.03128 1.70515 1.28051 1.40844 1.12208 0.83471 0.75624 0.75718 0.74801 1.21486 1.21556 1.21225 0.93775 0.93936 0.91475 0.94017 0.92080 0.90960 0.91609 0.91628 0.90722 0.90727 0.89197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 10.16 36.01 0.37 -0.66 16 2 C -0.24 -5.42 5.77 -100.59 -0.58 -6.00 16 3 C 0.31 6.42 7.54 -150.93 -1.14 5.29 16 4 N -0.64 -10.28 3.49 -180.96 -0.63 -10.91 16 5 C 0.13 1.52 11.01 59.85 0.66 2.18 16 6 C 0.12 1.60 7.57 -3.76 -0.03 1.57 16 7 C 0.10 1.65 7.98 -3.18 -0.03 1.63 16 8 N -0.59 -13.29 3.45 -113.56 -0.39 -13.68 16 9 C 0.53 14.43 7.77 -10.41 -0.08 14.35 16 10 O -0.50 -15.17 14.81 5.56 0.08 -15.09 16 11 C 0.07 1.91 2.59 -93.60 -0.24 1.67 16 12 H 0.06 1.58 8.06 -51.93 -0.42 1.16 16 13 C -0.59 -17.11 8.55 -34.44 -0.29 -17.41 16 14 H 0.06 1.75 7.77 -52.48 -0.41 1.34 16 15 C 0.02 0.57 5.31 -17.82 -0.09 0.47 16 16 N -0.88 -28.22 12.74 55.43 0.71 -27.51 16 17 Si 1.08 26.21 29.90 -169.99 -5.08 21.13 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 21 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.04 0.66 5.75 -51.93 -0.30 0.36 16 23 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 24 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.07 0.87 5.70 -51.93 -0.30 0.57 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 29 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.29 9.54 4.90 -40.82 -0.20 9.33 16 LS Contribution 257.24 15.07 3.88 3.88 Total: -1.00 -35.40 257.24 -6.70 -42.10 By element: Atomic # 1 Polarization: 0.79 SS G_CDS: -3.80 Total: -3.00 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.46 Total: 3.09 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.32 Total: -52.10 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.08 Total: -15.09 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: -5.08 Total: 21.13 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -35.40 -6.70 -42.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259759804.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.723 kcal (2) G-P(sol) polarization free energy of solvation -35.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds