Wall clock time and date at job start Thu Apr 9 2020 14:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34117 * 126.59067 * 2 1 4 4 N 1.39700 * 136.92106 * 0.04490 * 3 2 1 5 5 C 1.46505 * 125.38233 * 0.02562 * 4 3 2 6 6 C 1.46486 * 109.23506 * 179.97438 * 4 3 2 7 7 C 1.53550 * 105.05141 * 359.97438 * 6 4 3 8 8 N 1.38190 * 111.54278 * 180.02562 * 3 2 1 9 9 C 1.35461 * 111.86961 * 0.02562 * 8 3 2 10 10 O 1.21281 * 127.00526 * 180.02562 * 9 8 3 11 11 C 1.51117 * 126.58543 * 180.02562 * 2 1 3 12 12 H 1.09003 * 110.69236 * 298.60253 * 11 2 1 13 13 C 1.50706 * 110.56329 * 61.39223 * 11 2 1 14 14 H 1.08005 * 120.00138 * 355.80524 * 13 11 2 15 15 C 1.37871 * 119.99722 * 175.80404 * 13 11 2 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 120.00073 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46845 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47399 * 119.99815 * 17 15 13 20 20 H 1.48498 * 109.47295 * 240.00422 * 17 15 13 21 21 H 1.08998 * 109.46963 * 269.95653 * 1 2 3 22 22 H 1.08995 * 109.46799 * 29.95114 * 1 2 3 23 23 H 1.08996 * 109.47462 * 149.95489 * 1 2 3 24 24 H 1.09007 * 109.46711 * 90.00192 * 5 4 3 25 25 H 1.08991 * 109.47118 * 210.00431 * 5 4 3 26 26 H 1.08999 * 109.47185 * 330.00820 * 5 4 3 27 27 H 1.09003 * 110.32941 * 118.89048 * 6 4 3 28 28 H 1.09007 * 110.32532 * 241.10407 * 6 4 3 29 29 H 1.09003 * 110.33796 * 241.12511 * 7 6 4 30 30 H 1.08999 * 110.33325 * 118.88327 * 7 6 4 31 31 H 0.97000 * 119.99651 * 0.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3065 1.0768 0.0000 4 7 2.1486 2.4649 0.0007 5 6 0.8660 3.1728 0.0024 6 6 3.4683 3.1007 0.0008 7 6 4.4712 1.9379 0.0007 8 7 3.6410 0.7181 -0.0006 9 6 3.8019 -0.6270 -0.0016 10 8 4.8503 -1.2367 -0.0018 11 6 2.4077 -1.2134 -0.0005 12 1 2.2453 -1.8141 0.8945 13 6 2.1807 -2.0406 -1.2397 14 1 1.4046 -1.7649 -1.9384 15 6 2.9638 -3.1493 -1.4814 16 7 3.9086 -3.4853 -0.6304 17 14 2.6821 -4.1750 -3.0169 18 1 1.5676 -3.5903 -3.8052 19 1 3.9182 -4.1842 -3.8399 20 1 2.3367 -5.5656 -2.6268 21 1 -0.3633 -0.0008 1.0277 22 1 -0.3633 0.8904 -0.5131 23 1 -0.3634 -0.8895 -0.5145 24 1 0.5490 3.3479 1.0306 25 1 0.9773 4.1276 -0.5112 26 1 0.1173 2.5693 -0.5107 27 1 3.5950 3.7104 -0.8938 28 1 3.5952 3.7096 0.8961 29 1 5.0923 1.9732 0.8957 30 1 5.0924 1.9736 -0.8942 31 1 4.0542 -2.9533 0.1675 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259759804.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:15 Heat of formation + Delta-G solvation = 0.522249 kcal Electronic energy + Delta-G solvation = -15659.140872 eV Core-core repulsion = 13134.102837 eV Total energy + Delta-G solvation = -2525.038036 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.40354 -39.15503 -36.56865 -35.13093 -34.06253 -30.60704 -29.40466 -28.15763 -25.98332 -24.91397 -23.12533 -21.51183 -19.87278 -18.82285 -17.47597 -17.22992 -16.52372 -15.99844 -15.73383 -15.47200 -15.06112 -14.76796 -14.28342 -13.98751 -13.57827 -13.53307 -13.40041 -12.94293 -12.87239 -12.68020 -12.57321 -12.17073 -11.92976 -11.73356 -10.95833 -10.80697 -10.51831 -9.63399 -8.54391 -7.80557 -6.33113 1.10905 1.52206 1.55302 1.65401 1.78703 2.08513 2.53569 2.61551 3.22002 3.41557 3.89650 3.94751 4.14454 4.35587 4.41427 4.52283 4.61017 4.68566 4.81281 4.89087 4.96666 5.06516 5.09353 5.17825 5.36482 5.68747 5.87973 6.02778 6.23331 6.39756 6.63359 6.79419 7.21765 7.50002 8.84679 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.034973 B = 0.010371 C = 0.008852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.433823 B = 2699.072088 C = 3162.468109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.277 4.277 3 C 0.321 3.679 4 N -0.640 5.640 5 C 0.121 3.879 6 C 0.125 3.875 7 C 0.084 3.916 8 N -0.598 5.598 9 C 0.520 3.480 10 O -0.546 6.546 11 C 0.056 3.944 12 H 0.026 0.974 13 C -0.597 4.597 14 H 0.061 0.939 15 C -0.037 4.037 16 N -0.916 5.916 17 Si 1.123 2.877 18 H -0.263 1.263 19 H -0.290 1.290 20 H -0.273 1.273 21 H 0.059 0.941 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.068 0.932 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.554 16.576 0.649 17.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.291 4.291 3 C 0.127 3.873 4 N -0.361 5.361 5 C -0.020 4.020 6 C 0.003 3.997 7 C -0.036 4.036 8 N -0.327 5.327 9 C 0.313 3.687 10 O -0.422 6.422 11 C 0.035 3.965 12 H 0.043 0.957 13 C -0.634 4.634 14 H 0.080 0.920 15 C -0.239 4.239 16 N -0.553 5.553 17 Si 0.944 3.056 18 H -0.187 1.187 19 H -0.216 1.216 20 H -0.199 1.199 21 H 0.078 0.922 22 H 0.091 0.909 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.115 0.885 26 H 0.087 0.913 27 H 0.116 0.884 28 H 0.120 0.880 29 H 0.107 0.893 30 H 0.098 0.902 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.249 15.125 -0.119 16.011 hybrid contribution 0.214 0.995 1.034 1.451 sum -5.035 16.121 0.914 16.914 Atomic orbital electron populations 1.19885 0.87973 1.01629 1.00890 1.21082 0.96339 0.89162 1.22483 1.18247 0.84022 0.85852 0.99174 1.46445 1.06968 0.99157 1.83524 1.21657 0.81383 0.96749 1.02168 1.22169 0.79493 0.93578 1.04507 1.22672 0.95286 0.82126 1.03504 1.47546 1.08391 1.06428 1.70342 1.22745 0.93528 0.79696 0.72693 1.90573 1.34898 1.65241 1.51452 1.18257 0.86354 0.93982 0.97955 0.95679 1.21859 1.21481 1.11934 1.08152 0.92032 1.27486 0.92688 0.98370 1.05384 1.70630 1.30227 1.41614 1.12871 0.82897 0.76241 0.74992 0.71452 1.18737 1.21644 1.19851 0.92229 0.90918 0.93217 0.92371 0.88540 0.91323 0.88430 0.87988 0.89337 0.90231 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.63 10.16 71.24 0.72 -0.90 16 2 C -0.28 -12.31 5.77 -17.25 -0.10 -12.41 16 3 C 0.32 12.79 7.54 129.85 0.98 13.77 16 4 N -0.64 -17.70 3.49 -726.44 -2.54 -20.23 16 5 C 0.12 2.21 11.01 127.77 1.41 3.62 16 6 C 0.12 2.71 7.57 86.57 0.66 3.36 16 7 C 0.08 2.63 7.98 86.36 0.69 3.32 16 8 N -0.60 -26.73 3.45 -631.19 -2.18 -28.90 16 9 C 0.52 29.40 7.77 87.72 0.68 30.09 16 10 O -0.55 -34.96 14.81 -3.03 -0.04 -35.00 16 11 C 0.06 3.14 2.59 -12.72 -0.03 3.11 16 12 H 0.03 1.54 8.06 -2.39 -0.02 1.53 16 13 C -0.60 -35.61 8.55 25.60 0.22 -35.39 16 14 H 0.06 3.56 7.77 -2.91 -0.02 3.54 16 15 C -0.04 -2.25 5.31 84.65 0.45 -1.80 16 16 N -0.92 -61.55 12.74 21.45 0.27 -61.27 16 17 Si 1.12 53.48 29.90 68.60 2.05 55.53 16 18 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.07 2.04 5.75 -2.39 -0.01 2.03 16 23 H 0.05 1.87 8.09 -2.39 -0.02 1.85 16 24 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 1.33 5.70 -2.39 -0.01 1.32 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.10 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.28 19.19 4.90 -92.71 -0.45 18.74 16 Total: -1.00 -82.17 257.24 4.68 -77.50 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 1.44 Total: 5.62 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: 5.67 Total: 6.76 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -4.44 Total: -110.41 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.04 Total: -35.00 kcal Atomic # 14 Polarization: 53.48 SS G_CDS: 2.05 Total: 55.53 kcal Total: -82.17 4.68 -77.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259759804.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.018 kcal (2) G-P(sol) polarization free energy of solvation -82.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds