Wall clock time and date at job start Thu Apr 9 2020 14:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.48854 * 2 1 4 4 C 1.53123 * 109.47597 * 120.02837 * 2 1 3 5 5 C 1.53330 * 109.53887 * 49.99822 * 4 2 1 6 6 C 1.50930 * 108.42566 * 50.05965 * 5 4 2 7 7 O 1.33831 * 127.80109 * 162.92847 * 6 5 4 8 8 C 1.34522 * 109.41633 * 179.97438 * 7 6 5 9 9 C 1.34768 * 108.48488 * 0.37643 * 8 7 6 10 10 C 1.34889 * 123.90175 * 343.23997 * 6 5 4 11 11 C 1.50640 * 124.55336 * 359.88847 * 10 6 5 12 12 O 1.42904 * 109.71417 * 103.35882 * 11 10 6 13 13 C 1.50702 * 109.68297 * 223.89051 * 11 10 6 14 14 H 1.08006 * 119.99541 * 4.13427 * 13 11 10 15 15 C 1.37878 * 120.00709 * 184.13178 * 13 11 10 16 16 N 1.31520 * 119.99244 * 6.13357 * 15 13 11 17 17 Si 1.86789 * 120.00420 * 186.13834 * 15 13 11 18 18 H 1.48495 * 109.47516 * 59.99832 * 17 15 13 19 19 H 1.48503 * 109.47036 * 180.02562 * 17 15 13 20 20 H 1.48504 * 109.47123 * 299.99782 * 17 15 13 21 21 H 1.08998 * 109.46636 * 299.97865 * 1 2 3 22 22 H 1.09005 * 109.46771 * 59.97533 * 1 2 3 23 23 H 1.08996 * 109.46951 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.45904 * 289.97310 * 4 2 1 25 25 H 1.09004 * 109.44844 * 170.00963 * 4 2 1 26 26 H 1.09007 * 109.67494 * 290.33242 * 5 4 2 27 27 H 1.08994 * 109.67712 * 169.79574 * 5 4 2 28 28 H 1.07999 * 125.75408 * 180.16322 * 8 7 6 29 29 H 1.07995 * 126.67918 * 179.73472 * 9 8 7 30 30 H 0.96699 * 113.99790 * 61.04675 * 12 11 10 31 31 H 0.97000 * 119.99359 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 1.2499 5 6 1.3358 -2.0777 1.3826 6 6 1.4343 -2.7982 0.0600 7 8 1.2431 -4.1007 -0.1807 8 6 1.4240 -4.3445 -1.4912 9 6 1.7438 -3.1861 -2.1012 10 6 1.7484 -2.1939 -1.1043 11 6 2.0416 -0.7238 -1.2521 12 8 3.4507 -0.5239 -1.3816 13 6 1.3387 -0.1861 -2.4719 14 1 0.6842 -0.8268 -3.0443 15 6 1.5309 1.1238 -2.8572 16 7 2.4179 1.8688 -2.2344 17 14 0.5317 1.8400 -4.2634 18 1 -0.9134 1.7732 -3.9283 19 1 0.9253 3.2555 -4.4796 20 1 0.7893 1.0606 -5.5010 21 1 -0.3632 0.5135 0.8902 22 1 -0.3633 0.5142 -0.8898 23 1 -0.3633 -1.0276 -0.0005 24 1 1.8307 -0.1160 2.1310 25 1 3.1159 -0.8791 1.1647 26 1 0.2877 -1.9228 1.6389 27 1 1.8206 -2.6689 2.1595 28 1 1.3321 -5.3069 -1.9727 29 1 1.9549 -3.0467 -3.1511 30 1 3.8398 -0.9558 -2.1544 31 1 2.5534 2.7902 -2.5057 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259767107.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:20 Heat of formation + Delta-G solvation = -39.203410 kcal Electronic energy + Delta-G solvation = -16079.959844 eV Core-core repulsion = 13520.906423 eV Total energy + Delta-G solvation = -2559.053421 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.93624 -37.60474 -34.12096 -32.20584 -31.86000 -29.77991 -27.93412 -25.71189 -24.62130 -21.97599 -20.49392 -20.43527 -17.26172 -16.66005 -16.56718 -15.45295 -14.56293 -14.43215 -14.04734 -13.94296 -13.12967 -12.76232 -12.12585 -12.01009 -11.74436 -11.31465 -11.28361 -11.07623 -10.87577 -10.80597 -10.38868 -10.11095 -9.83029 -9.50865 -8.90192 -8.74852 -8.52621 -8.09700 -7.50511 -5.95043 -4.10446 2.46161 3.29011 3.35191 3.37311 3.51198 3.66000 4.41504 5.28107 5.33598 5.59497 5.71685 5.81532 5.94162 5.94471 6.15994 6.33440 6.37080 6.50193 6.65947 6.70729 6.79408 6.88863 6.89944 7.10835 7.34952 7.47513 7.65662 7.77539 7.90349 7.99732 8.29470 8.86446 9.42282 9.63745 11.05590 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.032311 B = 0.012257 C = 0.010683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.383206 B = 2283.846675 C = 2620.337944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.066 4.066 3 H 0.092 0.908 4 C -0.114 4.114 5 C -0.028 4.028 6 C -0.038 4.038 7 O -0.186 6.186 8 C -0.082 4.082 9 C -0.182 4.182 10 C -0.159 4.159 11 C 0.319 3.681 12 O -0.550 6.550 13 C -0.548 4.548 14 H 0.055 0.945 15 C 0.082 3.918 16 N -0.853 5.853 17 Si 0.881 3.119 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.278 1.278 21 H 0.029 0.971 22 H 0.067 0.933 23 H 0.040 0.960 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.191 0.809 29 H 0.142 0.858 30 H 0.349 0.651 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.812 -6.554 3.678 7.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.085 4.085 3 H 0.111 0.889 4 C -0.151 4.151 5 C -0.065 4.065 6 C -0.088 4.088 7 O -0.083 6.083 8 C -0.149 4.149 9 C -0.202 4.202 10 C -0.161 4.161 11 C 0.279 3.721 12 O -0.353 6.353 13 C -0.586 4.586 14 H 0.073 0.927 15 C -0.124 4.124 16 N -0.488 5.488 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.203 1.203 21 H 0.048 0.952 22 H 0.086 0.914 23 H 0.059 0.941 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.208 0.792 29 H 0.160 0.840 30 H 0.193 0.807 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.893 -6.209 4.480 7.886 hybrid contribution -0.542 0.011 -1.712 1.796 sum -2.434 -6.198 2.767 7.211 Atomic orbital electron populations 1.21714 0.96095 1.00263 1.00424 1.20954 0.94429 1.01284 0.91785 0.88943 1.21717 1.00464 0.93613 0.99321 1.20147 1.01527 0.95045 0.89736 1.22402 1.07593 0.80613 0.98142 1.83780 1.70537 1.27030 1.26996 1.23835 1.09737 1.00135 0.81178 1.21576 1.05545 0.92347 1.00696 1.21604 1.03207 1.00161 0.91104 1.17127 0.79853 0.81792 0.93291 1.86473 1.22975 1.77381 1.48445 1.21393 1.29204 0.96492 1.11527 0.92657 1.24971 0.94372 0.97014 0.96065 1.70101 1.30957 1.07656 1.40079 0.86861 0.81003 0.78195 0.83105 1.20186 1.21295 1.20324 0.95173 0.91401 0.94141 0.92278 0.91442 0.90474 0.91538 0.79214 0.84006 0.80704 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.04 37.16 0.30 -2.42 16 2 C -0.07 -1.51 2.28 -90.34 -0.21 -1.71 16 3 H 0.09 2.40 7.05 -51.93 -0.37 2.03 16 4 C -0.11 -2.20 5.53 -26.50 -0.15 -2.35 16 5 C -0.03 -0.49 5.66 -27.60 -0.16 -0.64 16 6 C -0.04 -0.78 6.48 -35.38 -0.23 -1.01 16 7 O -0.19 -3.60 10.65 6.36 0.07 -3.53 16 8 C -0.08 -1.44 12.10 29.50 0.36 -1.08 16 9 C -0.18 -3.67 10.29 -39.90 -0.41 -4.08 16 10 C -0.16 -3.56 4.59 -104.93 -0.48 -4.04 16 11 C 0.32 7.81 0.47 -92.74 -0.04 7.77 16 12 O -0.55 -14.11 11.60 -35.23 -0.41 -14.52 16 13 C -0.55 -14.47 6.29 -34.44 -0.22 -14.68 16 14 H 0.06 1.49 7.49 -52.48 -0.39 1.09 16 15 C 0.08 2.18 5.14 -17.82 -0.09 2.09 16 16 N -0.85 -23.74 11.35 55.43 0.63 -23.11 16 17 Si 0.88 20.73 29.54 -169.99 -5.02 15.70 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.07 1.59 6.89 -51.93 -0.36 1.23 16 23 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.07 1.39 7.79 -51.93 -0.40 0.98 16 26 H 0.08 1.26 6.97 -51.92 -0.36 0.90 16 27 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 29 H 0.14 2.72 8.06 -52.49 -0.42 2.30 16 30 H 0.35 8.28 9.04 45.56 0.41 8.69 16 31 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 251.03 15.07 3.78 3.78 Total: -1.00 -29.40 251.03 -5.29 -34.69 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -3.01 Total: 9.16 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -1.33 Total: -22.17 kcal Atomic # 7 Polarization: -23.74 SS G_CDS: 0.63 Total: -23.11 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.34 Total: -18.06 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.40 -5.29 -34.69 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259767107.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.510 kcal (2) G-P(sol) polarization free energy of solvation -29.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds