Wall clock time and date at job start Thu Apr 9 2020 14:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.09006 * 109.47892 * 2 1 4 4 C 1.53125 * 109.48330 * 239.98317 * 2 1 3 5 5 C 1.53344 * 109.53090 * 309.99520 * 4 2 1 6 6 C 1.50929 * 108.42213 * 309.93838 * 5 4 2 7 7 O 1.33831 * 127.79996 * 196.73252 * 6 5 4 8 8 C 1.34525 * 109.41525 * 179.68603 * 7 6 5 9 9 C 1.34771 * 108.48593 * 0.47121 * 8 7 6 10 10 C 1.34897 * 123.89953 * 16.73980 * 6 5 4 11 11 C 1.50634 * 124.55932 * 0.13473 * 10 6 5 12 12 O 1.42895 * 109.68522 * 256.63129 * 11 10 6 13 13 C 1.50701 * 109.68231 * 136.07409 * 11 10 6 14 14 H 1.08001 * 120.00090 * 354.70396 * 13 11 10 15 15 C 1.37879 * 119.99849 * 174.69530 * 13 11 10 16 16 N 1.31504 * 120.00309 * 4.94687 * 15 13 11 17 17 Si 1.86810 * 119.99750 * 184.94592 * 15 13 11 18 18 H 1.48504 * 109.46832 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.46787 * 120.00215 * 17 15 13 20 20 H 1.48499 * 109.47181 * 240.00309 * 17 15 13 21 21 H 1.09009 * 109.47068 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47544 * 300.01966 * 1 2 3 23 23 H 1.09004 * 109.47295 * 60.02216 * 1 2 3 24 24 H 1.08994 * 109.46307 * 189.97701 * 4 2 1 25 25 H 1.09002 * 109.45079 * 70.00279 * 4 2 1 26 26 H 1.08997 * 109.67138 * 190.20737 * 5 4 2 27 27 H 1.09002 * 109.70292 * 69.69261 * 5 4 2 28 28 H 1.07995 * 125.75891 * 180.31044 * 8 7 6 29 29 H 1.07998 * 126.68009 * 179.84241 * 9 8 7 30 30 H 0.96701 * 113.99879 * 300.00547 * 12 11 10 31 31 H 0.97002 * 120.00277 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0406 -0.7222 -1.2500 5 6 1.3359 -2.0776 -1.3828 6 6 1.4345 -2.7981 -0.0603 7 8 1.2374 -4.0995 0.1815 8 6 1.4281 -4.3451 1.4903 9 6 1.7420 -3.1856 2.1014 10 6 1.7490 -2.1938 1.1041 11 6 2.0421 -0.7237 1.2519 12 8 3.4512 -0.5244 1.3811 13 6 1.3389 -0.1861 2.4716 14 1 0.6698 -0.8213 3.0330 15 6 1.5498 1.1166 2.8708 16 7 2.2870 1.9189 2.1344 17 14 0.7884 1.7421 4.4579 18 1 0.0103 0.6507 5.0973 19 1 1.8632 2.1891 5.3799 20 1 -0.1131 2.8834 4.1582 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5141 0.8898 23 1 -0.3634 0.5135 -0.8902 24 1 3.1159 -0.8787 -1.1650 25 1 1.8303 -0.1157 -2.1309 26 1 1.8208 -2.6686 -2.1597 27 1 0.2879 -1.9233 -1.6395 28 1 1.3415 -5.3084 1.9709 29 1 1.9520 -3.0460 3.1515 30 1 3.8430 -0.9698 2.1447 31 1 2.4352 2.8355 2.4151 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259767111.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:23 Heat of formation + Delta-G solvation = -39.670703 kcal Electronic energy + Delta-G solvation = -16078.688242 eV Core-core repulsion = 13519.614558 eV Total energy + Delta-G solvation = -2559.073684 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.93459 -37.59788 -34.13661 -32.23079 -31.86770 -29.74286 -27.93057 -25.71327 -24.61004 -21.97350 -20.47714 -20.43512 -17.24307 -16.67268 -16.57971 -15.45515 -14.56828 -14.45054 -14.03839 -13.90188 -13.13169 -12.77144 -12.12489 -11.99943 -11.71142 -11.33307 -11.27302 -11.10915 -10.86126 -10.81686 -10.33674 -10.11266 -9.80312 -9.46593 -8.91596 -8.78648 -8.46637 -8.13714 -7.50647 -5.96566 -4.10964 2.46202 3.26642 3.35978 3.38835 3.51158 3.66204 4.41188 5.28082 5.34217 5.61052 5.73326 5.82181 5.94643 5.95185 6.16823 6.36214 6.39245 6.52554 6.67417 6.71726 6.80424 6.90247 6.91842 7.13426 7.36079 7.51204 7.67642 7.80733 7.93179 8.00934 8.30004 8.86395 9.38975 9.63245 11.04791 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.032307 B = 0.012339 C = 0.010554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 866.485690 B = 2268.710989 C = 2652.361565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.067 4.067 3 H 0.099 0.901 4 C -0.114 4.114 5 C -0.028 4.028 6 C -0.037 4.037 7 O -0.186 6.186 8 C -0.082 4.082 9 C -0.182 4.182 10 C -0.160 4.160 11 C 0.318 3.682 12 O -0.553 6.553 13 C -0.546 4.546 14 H 0.056 0.944 15 C 0.082 3.918 16 N -0.856 5.856 17 Si 0.882 3.118 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.284 1.284 21 H 0.037 0.963 22 H 0.067 0.933 23 H 0.028 0.972 24 H 0.066 0.934 25 H 0.058 0.942 26 H 0.066 0.934 27 H 0.077 0.923 28 H 0.191 0.809 29 H 0.142 0.858 30 H 0.349 0.651 31 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 -6.662 -3.415 7.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.085 4.085 3 H 0.118 0.882 4 C -0.152 4.152 5 C -0.065 4.065 6 C -0.086 4.086 7 O -0.083 6.083 8 C -0.149 4.149 9 C -0.202 4.202 10 C -0.162 4.162 11 C 0.279 3.721 12 O -0.356 6.356 13 C -0.584 4.584 14 H 0.075 0.925 15 C -0.124 4.124 16 N -0.491 5.491 17 Si 0.710 3.290 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.210 1.210 21 H 0.056 0.944 22 H 0.086 0.914 23 H 0.047 0.953 24 H 0.085 0.915 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.208 0.792 29 H 0.160 0.840 30 H 0.192 0.808 31 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.610 -6.311 -4.213 7.757 hybrid contribution -0.386 -0.044 1.793 1.835 sum -1.997 -6.355 -2.420 7.087 Atomic orbital electron populations 1.21682 0.96160 1.00024 1.00406 1.21000 0.94417 1.01698 0.91425 0.88246 1.21738 1.00384 0.93570 0.99494 1.20157 1.01542 0.95096 0.89689 1.22413 1.07396 0.80672 0.98151 1.83782 1.70256 1.27146 1.27157 1.23835 1.09745 1.00085 0.81248 1.21580 1.05631 0.92306 1.00657 1.21605 1.03361 1.00145 0.91072 1.17141 0.79629 0.81825 0.93503 1.86483 1.23144 1.76316 1.49638 1.21472 1.28450 0.97083 1.11370 0.92534 1.24950 0.94471 0.96609 0.96342 1.70027 1.36911 1.05723 1.36484 0.86718 0.79164 0.78896 0.84262 1.19820 1.20979 1.21012 0.94359 0.91388 0.95253 0.91532 0.92305 0.91586 0.90486 0.79217 0.84007 0.80752 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 8.04 37.15 0.30 -2.40 16 2 C -0.07 -1.54 2.26 -90.35 -0.20 -1.74 16 3 H 0.10 2.60 6.74 -51.93 -0.35 2.25 16 4 C -0.11 -2.23 5.53 -26.49 -0.15 -2.37 16 5 C -0.03 -0.50 5.65 -27.59 -0.16 -0.65 16 6 C -0.04 -0.76 6.48 -35.38 -0.23 -0.99 16 7 O -0.19 -3.61 10.65 6.35 0.07 -3.54 16 8 C -0.08 -1.44 12.10 29.50 0.36 -1.09 16 9 C -0.18 -3.67 10.30 -39.90 -0.41 -4.08 16 10 C -0.16 -3.59 4.58 -104.93 -0.48 -4.07 16 11 C 0.32 7.80 0.46 -92.74 -0.04 7.76 16 12 O -0.55 -14.11 11.81 -35.23 -0.42 -14.53 16 13 C -0.55 -14.39 6.27 -34.44 -0.22 -14.61 16 14 H 0.06 1.53 7.50 -52.49 -0.39 1.13 16 15 C 0.08 2.18 5.21 -17.82 -0.09 2.09 16 16 N -0.86 -23.74 11.20 55.43 0.62 -23.12 16 17 Si 0.88 20.71 29.54 -169.99 -5.02 15.69 16 18 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H 0.04 0.79 5.64 -51.92 -0.29 0.50 16 22 H 0.07 1.60 6.92 -51.93 -0.36 1.24 16 23 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.07 1.37 7.79 -51.93 -0.40 0.97 16 25 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.08 1.27 6.97 -51.93 -0.36 0.91 16 28 H 0.19 2.43 8.06 -52.49 -0.42 2.01 16 29 H 0.14 2.71 8.06 -52.49 -0.42 2.28 16 30 H 0.35 8.13 9.04 45.56 0.41 8.54 16 31 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 250.86 15.07 3.78 3.78 Total: -1.00 -29.43 250.86 -5.29 -34.73 By element: Atomic # 1 Polarization: 12.14 SS G_CDS: -3.00 Total: 9.14 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: -1.32 Total: -22.15 kcal Atomic # 7 Polarization: -23.74 SS G_CDS: 0.62 Total: -23.12 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.35 Total: -18.07 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 3.78 Total: 3.78 kcal Total: -29.43 -5.29 -34.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259767111.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.945 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds