Wall clock time and date at job start Thu Apr 9 2020 14:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.40781 * 2 1 4 4 C 1.53101 * 109.32550 * 240.22467 * 2 1 3 5 5 C 1.53451 * 109.81842 * 167.93355 * 4 2 1 6 6 C 1.50690 * 108.12243 * 50.62163 * 5 4 2 7 7 C 1.33504 * 129.49073 * 163.40794 * 6 5 4 8 8 O 1.34680 * 108.20530 * 180.16040 * 7 6 5 9 9 C 1.34690 * 109.55400 * 359.96875 * 8 7 6 10 10 C 1.33512 * 108.19961 * 359.94644 * 9 8 7 11 11 C 1.50689 * 129.48056 * 180.35215 * 10 9 8 12 12 O 1.42902 * 109.74140 * 282.87137 * 11 10 9 13 13 C 1.50696 * 109.74531 * 43.52902 * 11 10 9 14 14 H 1.07998 * 120.00611 * 234.73331 * 13 11 10 15 15 C 1.37879 * 119.99696 * 54.73180 * 13 11 10 16 16 N 1.31521 * 120.00006 * 4.91041 * 15 13 11 17 17 Si 1.86798 * 120.00267 * 184.91067 * 15 13 11 18 18 H 1.48503 * 109.46943 * 59.99785 * 17 15 13 19 19 H 1.48498 * 109.47626 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47363 * 300.00006 * 17 15 13 21 21 H 1.09002 * 109.47106 * 300.16151 * 1 2 3 22 22 H 1.09001 * 109.47337 * 60.16176 * 1 2 3 23 23 H 1.08997 * 109.47248 * 180.16103 * 1 2 3 24 24 H 1.08997 * 109.46347 * 47.80574 * 4 2 1 25 25 H 1.08999 * 109.38960 * 288.01691 * 4 2 1 26 26 H 1.08998 * 109.74015 * 290.94944 * 5 4 2 27 27 H 1.08996 * 109.74095 * 170.29382 * 5 4 2 28 28 H 1.07997 * 125.89489 * 0.17529 * 7 6 5 29 29 H 1.07996 * 125.89680 * 179.97438 * 9 8 7 30 30 H 0.96704 * 114.00148 * 60.00001 * 12 11 10 31 31 H 0.96996 * 119.99737 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0366 -0.7175 -1.2540 5 6 3.5410 -0.4673 -1.4245 6 6 4.2202 -0.7865 -0.1178 7 6 5.5123 -1.0072 0.1357 8 8 5.6460 -1.2572 1.4524 9 6 4.4392 -1.1968 2.0475 10 6 3.5285 -0.9069 1.1152 11 6 2.0398 -0.7200 1.2555 12 8 1.4025 -1.9936 1.3737 13 6 1.7440 0.1123 2.4764 14 1 1.0694 -0.2598 3.2332 15 6 2.3346 1.3490 2.6272 16 7 3.0792 1.8442 1.6628 17 14 2.0773 2.3212 4.2014 18 1 2.5857 1.5376 5.3558 19 1 2.8135 3.6080 4.1145 20 1 0.6286 2.5907 4.3856 21 1 -0.3633 0.5163 0.8885 22 1 -0.3634 0.5113 -0.8914 23 1 -0.3633 -1.0276 0.0029 24 1 1.5054 -0.3402 -2.1278 25 1 1.8563 -1.7880 -1.1562 26 1 3.7134 0.5773 -1.6835 27 1 3.9344 -1.1113 -2.2109 28 1 6.3121 -0.9883 -0.5897 29 1 4.2424 -1.3550 3.0976 30 1 1.6958 -2.5109 2.1364 31 1 3.4949 2.7141 1.7691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259774607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:37 Heat of formation + Delta-G solvation = -44.505609 kcal Electronic energy + Delta-G solvation = -16179.949415 eV Core-core repulsion = 13620.666073 eV Total energy + Delta-G solvation = -2559.283341 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.48371 -37.47215 -34.11600 -32.61696 -31.54100 -29.59451 -27.65712 -26.14102 -23.90339 -22.16275 -19.95208 -19.61363 -18.05426 -16.87552 -16.31107 -14.93998 -14.74968 -14.28447 -13.77436 -13.38786 -12.94755 -12.86030 -12.40484 -12.25119 -11.93415 -11.14854 -11.02889 -10.95224 -10.82550 -10.49640 -10.42067 -10.08631 -9.64270 -9.45404 -9.26243 -8.55679 -8.31789 -8.08670 -7.34475 -6.03913 -4.18421 2.89389 3.25927 3.32225 3.34144 3.88552 4.20197 4.35603 5.20514 5.62738 5.77338 5.86687 5.94885 6.00743 6.36543 6.42053 6.55243 6.58492 6.60226 6.80932 6.90727 6.95357 7.09207 7.17848 7.30207 7.44980 7.58841 7.71276 7.80861 8.05306 8.22477 8.35923 8.65183 9.15141 9.52981 10.95421 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.024398 B = 0.015706 C = 0.012099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.369820 B = 1782.325561 C = 2313.591650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.070 4.070 3 H 0.107 0.893 4 C -0.111 4.111 5 C -0.043 4.043 6 C -0.153 4.153 7 C -0.078 4.078 8 O -0.201 6.201 9 C -0.050 4.050 10 C -0.118 4.118 11 C 0.316 3.684 12 O -0.575 6.575 13 C -0.547 4.547 14 H 0.062 0.938 15 C 0.076 3.924 16 N -0.865 5.865 17 Si 0.888 3.112 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.277 1.277 21 H 0.055 0.945 22 H 0.025 0.975 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.055 0.945 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.182 0.818 29 H 0.188 0.812 30 H 0.357 0.643 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.484 -3.563 -3.043 4.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.089 4.089 3 H 0.125 0.875 4 C -0.149 4.149 5 C -0.080 4.080 6 C -0.154 4.154 7 C -0.144 4.144 8 O -0.100 6.100 9 C -0.116 4.116 10 C -0.120 4.120 11 C 0.277 3.723 12 O -0.380 6.380 13 C -0.585 4.585 14 H 0.080 0.920 15 C -0.129 4.129 16 N -0.500 5.500 17 Si 0.715 3.285 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.202 1.202 21 H 0.074 0.926 22 H 0.044 0.956 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.074 0.926 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.199 0.801 29 H 0.205 0.795 30 H 0.201 0.799 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.551 -3.222 -3.517 5.015 hybrid contribution 0.245 0.732 1.331 1.539 sum 1.796 -2.489 -2.186 3.768 Atomic orbital electron populations 1.21563 0.96907 1.00248 0.99551 1.21230 0.94128 1.01851 0.91659 0.87499 1.21672 0.94081 1.00718 0.98396 1.19967 0.95439 1.00196 0.92445 1.20267 0.93239 1.04908 0.97012 1.22961 0.97616 1.10422 0.83450 1.84087 1.33261 1.72088 1.20523 1.23134 0.81191 1.09006 0.98256 1.21130 0.99587 1.00181 0.91070 1.17247 0.81755 0.79601 0.93746 1.86367 1.68534 1.32322 1.50758 1.21534 1.28573 1.02759 1.05655 0.91995 1.24874 0.94646 0.97199 0.96153 1.69910 1.31217 1.17807 1.31089 0.86731 0.78323 0.79356 0.84057 1.20260 1.21320 1.20232 0.92568 0.95594 0.93725 0.93676 0.92641 0.91530 0.92914 0.80105 0.79549 0.79901 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.72 8.77 37.15 0.33 -2.40 16 2 C -0.07 -1.63 1.84 -90.34 -0.17 -1.80 16 3 H 0.11 2.79 6.02 -51.93 -0.31 2.48 16 4 C -0.11 -2.28 5.16 -26.45 -0.14 -2.41 16 5 C -0.04 -0.85 6.30 -27.65 -0.17 -1.03 16 6 C -0.15 -3.35 5.93 -104.89 -0.62 -3.97 16 7 C -0.08 -1.57 12.07 29.08 0.35 -1.22 16 8 O -0.20 -4.33 10.68 3.60 0.04 -4.29 16 9 C -0.05 -1.12 11.63 29.08 0.34 -0.79 16 10 C -0.12 -2.77 3.63 -104.88 -0.38 -3.15 16 11 C 0.32 7.62 0.52 -92.70 -0.05 7.57 16 12 O -0.58 -13.07 11.56 -35.23 -0.41 -13.48 16 13 C -0.55 -14.14 7.29 -34.44 -0.25 -14.39 16 14 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 15 C 0.08 1.97 5.08 -17.82 -0.09 1.88 16 16 N -0.86 -23.20 10.40 55.43 0.58 -22.63 16 17 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 21 H 0.06 1.28 7.56 -51.93 -0.39 0.89 16 22 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.04 0.95 7.49 -51.93 -0.39 0.56 16 24 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 25 H 0.05 1.16 7.74 -51.93 -0.40 0.76 16 26 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 27 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.18 2.86 8.06 -52.49 -0.42 2.43 16 29 H 0.19 3.83 8.06 -52.49 -0.42 3.41 16 30 H 0.36 7.00 9.05 45.56 0.41 7.41 16 31 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 254.36 15.07 3.83 3.83 Total: -1.00 -28.50 254.36 -5.00 -33.50 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -3.16 Total: 9.27 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: -0.86 Total: -21.70 kcal Atomic # 7 Polarization: -23.20 SS G_CDS: 0.58 Total: -22.63 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.37 Total: -17.77 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -28.50 -5.00 -33.50 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.009 kcal (2) G-P(sol) polarization free energy of solvation -28.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds