Wall clock time and date at job start Thu Apr 9 2020 14:15:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.40781 * 2 1 4 4 C 1.53101 * 109.32550 * 240.22467 * 2 1 3 5 5 C 1.53451 * 109.81842 * 167.93355 * 4 2 1 6 6 C 1.50690 * 108.12243 * 50.62163 * 5 4 2 7 7 C 1.33504 * 129.49073 * 163.40794 * 6 5 4 8 8 O 1.34680 * 108.20530 * 180.16040 * 7 6 5 9 9 C 1.34690 * 109.55400 * 359.96875 * 8 7 6 10 10 C 1.33512 * 108.19961 * 359.94644 * 9 8 7 11 11 C 1.50689 * 129.48056 * 180.35215 * 10 9 8 12 12 O 1.42902 * 109.74140 * 282.87137 * 11 10 9 13 13 C 1.50696 * 109.74531 * 43.52902 * 11 10 9 14 14 H 1.07998 * 120.00611 * 234.73331 * 13 11 10 15 15 C 1.37879 * 119.99696 * 54.73180 * 13 11 10 16 16 N 1.31521 * 120.00006 * 4.91041 * 15 13 11 17 17 Si 1.86798 * 120.00267 * 184.91067 * 15 13 11 18 18 H 1.48503 * 109.46943 * 59.99785 * 17 15 13 19 19 H 1.48498 * 109.47626 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47363 * 300.00006 * 17 15 13 21 21 H 1.09002 * 109.47106 * 300.16151 * 1 2 3 22 22 H 1.09001 * 109.47337 * 60.16176 * 1 2 3 23 23 H 1.08997 * 109.47248 * 180.16103 * 1 2 3 24 24 H 1.08997 * 109.46347 * 47.80574 * 4 2 1 25 25 H 1.08999 * 109.38960 * 288.01691 * 4 2 1 26 26 H 1.08998 * 109.74015 * 290.94944 * 5 4 2 27 27 H 1.08996 * 109.74095 * 170.29382 * 5 4 2 28 28 H 1.07997 * 125.89489 * 0.17529 * 7 6 5 29 29 H 1.07996 * 125.89680 * 179.97438 * 9 8 7 30 30 H 0.96704 * 114.00148 * 60.00001 * 12 11 10 31 31 H 0.96996 * 119.99737 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8921 1.0281 0.0000 4 6 2.0366 -0.7175 -1.2540 5 6 3.5410 -0.4673 -1.4245 6 6 4.2202 -0.7865 -0.1178 7 6 5.5123 -1.0072 0.1357 8 8 5.6460 -1.2572 1.4524 9 6 4.4392 -1.1968 2.0475 10 6 3.5285 -0.9069 1.1152 11 6 2.0398 -0.7200 1.2555 12 8 1.4025 -1.9936 1.3737 13 6 1.7440 0.1123 2.4764 14 1 1.0694 -0.2598 3.2332 15 6 2.3346 1.3490 2.6272 16 7 3.0792 1.8442 1.6628 17 14 2.0773 2.3212 4.2014 18 1 2.5857 1.5376 5.3558 19 1 2.8135 3.6080 4.1145 20 1 0.6286 2.5907 4.3856 21 1 -0.3633 0.5163 0.8885 22 1 -0.3634 0.5113 -0.8914 23 1 -0.3633 -1.0276 0.0029 24 1 1.5054 -0.3402 -2.1278 25 1 1.8563 -1.7880 -1.1562 26 1 3.7134 0.5773 -1.6835 27 1 3.9344 -1.1113 -2.2109 28 1 6.3121 -0.9883 -0.5897 29 1 4.2424 -1.3550 3.0976 30 1 1.6958 -2.5109 2.1364 31 1 3.4949 2.7141 1.7691 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259774607.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:37 Heat of formation + Delta-G solvation = -62.846937 kcal Electronic energy + Delta-G solvation = -16180.744754 eV Core-core repulsion = 13620.666073 eV Total energy + Delta-G solvation = -2560.078681 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.13734 -39.22713 -35.81834 -34.55631 -33.24693 -31.33513 -29.28730 -28.03277 -25.69619 -23.84192 -21.67345 -21.29366 -19.79778 -18.77550 -17.98654 -16.81281 -16.44769 -16.06733 -15.46951 -15.05598 -14.68092 -14.51426 -14.13175 -13.96767 -13.70964 -12.90704 -12.80528 -12.78197 -12.47329 -12.33475 -12.12746 -11.93677 -11.38126 -11.25297 -11.04665 -10.42037 -10.17572 -9.79568 -9.01294 -8.01265 -6.20516 1.25917 1.40948 1.43483 1.48615 2.17680 2.43287 2.61525 3.21581 3.98624 4.14035 4.30795 4.35226 4.37222 4.72967 4.79332 4.88421 4.92946 5.01893 5.12953 5.21901 5.32663 5.39012 5.47292 5.65132 5.69807 5.71945 5.86997 6.07115 6.20969 6.35577 6.65362 6.70965 7.30948 7.57851 8.95091 Molecular weight = 222.10amu Principal moments of inertia in cm(-1) A = 0.024398 B = 0.015706 C = 0.012099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.369820 B = 1782.325561 C = 2313.591650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.075 4.075 3 H 0.078 0.922 4 C -0.106 4.106 5 C -0.040 4.040 6 C -0.182 4.182 7 C -0.067 4.067 8 O -0.205 6.205 9 C -0.066 4.066 10 C -0.138 4.138 11 C 0.311 3.689 12 O -0.581 6.581 13 C -0.557 4.557 14 H 0.051 0.949 15 C 0.041 3.959 16 N -0.880 5.880 17 Si 0.937 3.063 18 H -0.273 1.273 19 H -0.289 1.289 20 H -0.277 1.277 21 H 0.034 0.966 22 H 0.048 0.952 23 H 0.045 0.955 24 H 0.067 0.933 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.085 0.915 28 H 0.226 0.774 29 H 0.195 0.805 30 H 0.367 0.633 31 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.038 -3.823 -3.853 5.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.094 4.094 3 H 0.096 0.904 4 C -0.143 4.143 5 C -0.077 4.077 6 C -0.184 4.184 7 C -0.133 4.133 8 O -0.104 6.104 9 C -0.131 4.131 10 C -0.140 4.140 11 C 0.271 3.729 12 O -0.387 6.387 13 C -0.595 4.595 14 H 0.069 0.931 15 C -0.161 4.161 16 N -0.517 5.517 17 Si 0.764 3.236 18 H -0.198 1.198 19 H -0.214 1.214 20 H -0.203 1.203 21 H 0.053 0.947 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.104 0.896 28 H 0.242 0.758 29 H 0.212 0.788 30 H 0.213 0.787 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.101 -3.496 -4.316 5.938 hybrid contribution 0.058 0.782 1.585 1.768 sum 2.158 -2.715 -2.731 4.414 Atomic orbital electron populations 1.21485 0.96170 1.00264 0.99646 1.21157 0.94839 1.00455 0.92948 0.90372 1.21599 0.95111 0.99890 0.97729 1.19999 0.94628 1.00650 0.92406 1.20643 0.94112 1.06140 0.97456 1.23778 0.98346 1.07952 0.83230 1.84091 1.32801 1.72060 1.21405 1.23325 0.81514 1.09557 0.98753 1.21222 0.99393 1.00945 0.92429 1.17230 0.82550 0.79660 0.93434 1.86318 1.68700 1.32119 1.51520 1.21725 1.28248 1.03282 1.06249 0.93088 1.25372 0.94644 0.97896 0.98218 1.70033 1.31848 1.17689 1.32084 0.85949 0.77963 0.78149 0.81547 1.19809 1.21438 1.20304 0.94685 0.93290 0.93605 0.91460 0.93233 0.91936 0.89629 0.75767 0.78827 0.78652 0.93351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.06 8.77 71.98 0.63 -4.42 16 2 C -0.08 -3.46 1.84 -10.61 -0.02 -3.48 16 3 H 0.08 4.08 6.02 -2.39 -0.01 4.07 16 4 C -0.11 -4.14 5.16 30.78 0.16 -3.98 16 5 C -0.04 -1.47 6.30 30.00 0.19 -1.28 16 6 C -0.18 -7.66 5.93 -20.04 -0.12 -7.78 16 7 C -0.07 -2.53 12.07 66.75 0.81 -1.72 16 8 O -0.20 -8.52 10.68 -10.03 -0.11 -8.62 16 9 C -0.07 -2.91 11.63 66.75 0.78 -2.14 16 10 C -0.14 -6.40 3.63 -20.03 -0.07 -6.47 16 11 C 0.31 14.92 0.52 -12.14 -0.01 14.92 16 12 O -0.58 -26.22 11.56 -148.98 -1.72 -27.94 16 13 C -0.56 -28.94 7.29 25.60 0.19 -28.76 16 14 H 0.05 2.69 7.82 -2.91 -0.02 2.66 16 15 C 0.04 2.15 5.08 84.65 0.43 2.58 16 16 N -0.88 -47.34 10.40 21.45 0.22 -47.11 16 17 Si 0.94 42.17 29.54 68.60 2.03 44.20 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 19 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 21 H 0.03 1.59 7.56 -2.39 -0.02 1.57 16 22 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 23 H 0.04 1.90 7.49 -2.39 -0.02 1.89 16 24 H 0.07 2.29 8.09 -2.39 -0.02 2.27 16 25 H 0.05 1.98 7.74 -2.39 -0.02 1.96 16 26 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 27 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 28 H 0.23 6.14 8.06 -2.91 -0.02 6.11 16 29 H 0.19 7.97 8.06 -2.91 -0.02 7.95 16 30 H 0.37 14.41 9.05 -74.05 -0.67 13.74 16 31 H 0.26 13.58 8.31 -92.71 -0.77 12.81 16 Total: -1.00 -59.43 254.36 3.84 -55.58 By element: Atomic # 1 Polarization: 25.97 SS G_CDS: 0.46 Total: 26.43 kcal Atomic # 6 Polarization: -45.49 SS G_CDS: 2.96 Total: -42.53 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.22 Total: -47.11 kcal Atomic # 8 Polarization: -34.74 SS G_CDS: -1.83 Total: -36.57 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -59.43 3.84 -55.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259774607.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.265 kcal (2) G-P(sol) polarization free energy of solvation -59.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds