Wall clock time and date at job start Thu Apr 9 2020 14:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48498 * 109.47393 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47086 * 240.00177 * 3 2 1 6 6 H 1.48495 * 109.47303 * 120.00215 * 3 2 1 7 7 C 1.37871 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99606 * 17.76393 * 7 2 1 9 9 C 1.50695 * 120.00367 * 197.76440 * 7 2 1 10 10 H 1.09002 * 109.51848 * 305.79267 * 9 7 2 11 11 C 1.53115 * 109.52677 * 65.98187 * 9 7 2 12 12 C 1.53030 * 109.28045 * 177.56183 * 11 9 7 13 13 N 1.46846 * 109.52481 * 300.82165 * 12 11 9 14 14 C 1.46848 * 111.19921 * 61.74400 * 13 12 11 15 15 H 1.08999 * 109.46424 * 58.26973 * 14 13 12 16 16 C 1.50699 * 109.46505 * 178.24561 * 14 13 12 17 17 C 1.41379 * 126.79765 * 245.05261 * 16 14 13 18 18 C 1.35450 * 103.98461 * 179.97438 * 17 16 14 19 19 O 1.34044 * 106.44674 * 0.02562 * 18 17 16 20 20 N 1.20922 * 111.56485 * 359.70590 * 19 18 17 21 21 C 1.53036 * 109.51979 * 298.25923 * 14 13 12 22 22 H 0.97004 * 119.99665 * 174.63029 * 1 2 3 23 23 H 1.09004 * 109.50174 * 297.50858 * 11 9 7 24 24 H 1.09009 * 109.49879 * 57.62019 * 11 9 7 25 25 H 1.09011 * 109.46343 * 180.80591 * 12 11 9 26 26 H 1.09000 * 109.45686 * 60.83320 * 12 11 9 27 27 H 1.00904 * 111.00233 * 297.64186 * 13 12 11 28 28 H 1.07999 * 128.01266 * 0.03189 * 17 16 14 29 29 H 1.08000 * 126.77815 * 179.97438 * 18 17 16 30 30 H 1.09007 * 109.50661 * 299.23601 * 21 14 13 31 31 H 1.09006 * 109.53713 * 179.13961 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 1.5032 -2.1069 -0.2863 9 6 3.4577 -1.2252 0.3976 10 1 4.0166 -0.5116 -0.2078 11 6 3.5908 -0.8572 1.8779 12 6 5.0612 -0.9498 2.2914 13 7 5.5504 -2.3153 2.0622 14 6 5.4767 -2.6740 0.6401 15 1 6.0632 -1.9651 0.0558 16 6 6.0268 -4.0632 0.4435 17 6 7.1860 -4.4200 -0.2829 18 6 7.2478 -5.7674 -0.1596 19 8 6.1931 -6.1292 0.5843 20 7 5.5318 -5.1717 0.9133 21 6 4.0185 -2.6329 0.1773 22 1 -0.4850 -0.8364 -0.0786 23 1 3.2323 0.1604 2.0335 24 1 2.9994 -1.5479 2.4792 25 1 5.1575 -0.7022 3.3486 26 1 5.6497 -0.2490 1.6992 27 1 5.0461 -2.9801 2.6295 28 1 7.8656 -3.7689 -0.8127 29 1 7.9982 -6.4214 -0.5788 30 1 3.4339 -3.3515 0.7518 31 1 3.9651 -2.8843 -0.8820 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259795274.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:45 Heat of formation + Delta-G solvation = 50.876096 kcal Electronic energy + Delta-G solvation = -15229.000520 eV Core-core repulsion = 12706.145991 eV Total energy + Delta-G solvation = -2522.854529 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.78002 -38.44503 -34.26557 -33.01763 -31.60508 -30.75334 -29.82691 -25.10690 -23.70017 -23.01010 -21.68398 -20.33726 -19.24585 -17.87961 -17.34984 -17.29486 -15.47870 -14.57226 -14.22978 -14.06148 -13.61241 -13.24345 -13.12958 -12.91629 -12.05136 -11.91152 -11.58023 -11.10916 -10.78392 -10.68906 -10.53212 -10.02007 -9.96196 -9.69952 -9.61124 -9.51892 -8.84818 -8.26803 -7.85319 -6.45084 -4.06991 1.63279 2.40461 3.35123 3.38521 3.40540 3.58918 4.33854 4.47548 4.57105 4.89419 5.23098 5.26148 5.39406 5.47902 5.66753 5.77015 5.88922 6.01003 6.08192 6.12937 6.32777 6.38420 6.68739 6.75460 6.88107 7.15804 7.41623 7.50213 7.69234 8.14294 8.36914 8.45167 8.89728 9.61912 10.93427 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.045739 B = 0.007566 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.016572 B = 3699.837815 C = 3924.483737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.029 3.971 3 Si 1.048 2.952 4 H -0.287 1.287 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.599 4.599 8 H 0.053 0.947 9 C 0.025 3.975 10 H 0.021 0.979 11 C -0.160 4.160 12 C 0.054 3.946 13 N -0.679 5.679 14 C 0.159 3.841 15 H 0.094 0.906 16 C 0.038 3.962 17 C -0.225 4.225 18 C -0.072 4.072 19 O 0.095 5.905 20 N -0.358 5.358 21 C -0.123 4.123 22 H 0.267 0.733 23 H 0.066 0.934 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.340 0.660 28 H 0.169 0.831 29 H 0.213 0.787 30 H 0.057 0.943 31 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.415 -6.668 0.509 16.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.176 4.176 3 Si 0.877 3.123 4 H -0.213 1.213 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.636 4.636 8 H 0.071 0.929 9 C 0.006 3.994 10 H 0.039 0.961 11 C -0.200 4.200 12 C -0.075 4.075 13 N -0.309 5.309 14 C 0.048 3.952 15 H 0.112 0.888 16 C -0.122 4.122 17 C -0.247 4.247 18 C -0.153 4.153 19 O 0.029 5.971 20 N -0.062 5.062 21 C -0.162 4.162 22 H 0.077 0.923 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.157 0.843 28 H 0.186 0.814 29 H 0.229 0.771 30 H 0.076 0.924 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 14.800 -5.126 1.306 15.717 hybrid contribution -0.129 -1.502 -0.820 1.716 sum 14.671 -6.628 0.486 16.106 Atomic orbital electron populations 1.70858 1.06990 1.30859 1.45476 1.25803 0.96157 1.02513 0.93105 0.83994 0.75352 0.75736 0.77200 1.21265 1.21064 1.19951 1.21965 0.94905 0.96082 1.50687 0.92913 1.18973 0.97312 0.91518 0.91628 0.96137 1.22770 0.94567 1.02440 1.00178 1.22117 0.95687 0.89319 1.00425 1.60848 1.60007 1.04651 1.05359 1.20051 0.96711 0.87494 0.90905 0.88774 1.23712 0.94394 0.96196 0.97879 1.22731 1.00412 0.95466 1.06056 1.25933 0.94008 0.96555 0.98850 1.84843 1.29705 1.30991 1.51609 1.73820 1.17152 0.95452 1.19808 1.22163 0.92828 1.00466 1.00785 0.92336 0.91508 0.92801 0.91547 0.91506 0.84308 0.81352 0.77077 0.92386 0.92622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.21 13.70 55.43 0.76 -27.45 16 2 C 0.03 0.84 5.34 -17.82 -0.10 0.74 16 3 Si 1.05 25.17 26.41 -169.99 -4.49 20.68 16 4 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -5.97 5.58 56.52 0.32 -5.66 16 7 C -0.60 -17.04 8.82 -34.45 -0.30 -17.34 16 8 H 0.05 1.64 7.99 -52.48 -0.42 1.22 16 9 C 0.02 0.59 1.74 -91.65 -0.16 0.43 16 10 H 0.02 0.48 6.78 -51.93 -0.35 0.13 16 11 C -0.16 -3.44 5.05 -26.66 -0.13 -3.58 16 12 C 0.05 0.94 6.55 -3.84 -0.03 0.92 16 13 N -0.68 -11.71 6.49 -107.99 -0.70 -12.41 16 14 C 0.16 2.79 2.93 -68.88 -0.20 2.58 16 15 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 16 C 0.04 0.61 6.12 -82.10 -0.50 0.11 16 17 C -0.22 -2.77 11.12 -39.38 -0.44 -3.21 16 18 C -0.07 -0.75 12.30 29.74 0.37 -0.38 16 19 O 0.09 1.33 11.20 17.16 0.19 1.52 16 20 N -0.36 -6.06 12.06 33.42 0.40 -5.65 16 21 C -0.12 -2.59 4.56 -26.65 -0.12 -2.71 16 22 H 0.27 8.30 8.73 -40.82 -0.36 7.94 16 23 H 0.07 1.50 4.88 -51.93 -0.25 1.24 16 24 H 0.05 1.21 8.14 -51.92 -0.42 0.78 16 25 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 27 H 0.34 6.00 8.79 -39.29 -0.35 5.65 16 28 H 0.17 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.21 1.10 8.06 -52.49 -0.42 0.68 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 LS Contribution 256.31 15.07 3.86 3.86 Total: -1.00 -31.66 256.31 -5.58 -37.24 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -3.99 Total: 4.65 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -1.62 Total: -22.44 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: 0.46 Total: -45.51 kcal Atomic # 8 Polarization: 1.33 SS G_CDS: 0.19 Total: 1.52 kcal Atomic # 14 Polarization: 25.17 SS G_CDS: -4.49 Total: 20.68 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.66 -5.58 -37.24 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259795274.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.114 kcal (2) G-P(sol) polarization free energy of solvation -31.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds