Wall clock time and date at job start Thu Apr 9 2020 14:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99584 * 2 1 4 4 H 1.48498 * 109.47393 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47086 * 240.00177 * 3 2 1 6 6 H 1.48495 * 109.47303 * 120.00215 * 3 2 1 7 7 C 1.37871 * 120.00462 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99606 * 17.76393 * 7 2 1 9 9 C 1.50695 * 120.00367 * 197.76440 * 7 2 1 10 10 H 1.09002 * 109.51848 * 305.79267 * 9 7 2 11 11 C 1.53115 * 109.52677 * 65.98187 * 9 7 2 12 12 C 1.53030 * 109.28045 * 177.56183 * 11 9 7 13 13 N 1.46846 * 109.52481 * 300.82165 * 12 11 9 14 14 C 1.46848 * 111.19921 * 61.74400 * 13 12 11 15 15 H 1.08999 * 109.46424 * 58.26973 * 14 13 12 16 16 C 1.50699 * 109.46505 * 178.24561 * 14 13 12 17 17 C 1.41379 * 126.79765 * 245.05261 * 16 14 13 18 18 C 1.35450 * 103.98461 * 179.97438 * 17 16 14 19 19 O 1.34044 * 106.44674 * 0.02562 * 18 17 16 20 20 N 1.20922 * 111.56485 * 359.70590 * 19 18 17 21 21 C 1.53036 * 109.51979 * 298.25923 * 14 13 12 22 22 H 0.97004 * 119.99665 * 174.63029 * 1 2 3 23 23 H 1.09004 * 109.50174 * 297.50858 * 11 9 7 24 24 H 1.09009 * 109.49879 * 57.62019 * 11 9 7 25 25 H 1.09011 * 109.46343 * 180.80591 * 12 11 9 26 26 H 1.09000 * 109.45686 * 60.83320 * 12 11 9 27 27 H 1.00904 * 111.00233 * 297.64186 * 13 12 11 28 28 H 1.07999 * 128.01266 * 0.03189 * 17 16 14 29 29 H 1.08000 * 126.77815 * 179.97438 * 18 17 16 30 30 H 1.09007 * 109.50661 * 299.23601 * 21 14 13 31 31 H 1.09006 * 109.53713 * 179.13961 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2840 2.7465 -0.0006 5 1 3.1028 1.6965 -1.2125 6 1 3.1028 1.6965 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 1.5032 -2.1069 -0.2863 9 6 3.4577 -1.2252 0.3976 10 1 4.0166 -0.5116 -0.2078 11 6 3.5908 -0.8572 1.8779 12 6 5.0612 -0.9498 2.2914 13 7 5.5504 -2.3153 2.0622 14 6 5.4767 -2.6740 0.6401 15 1 6.0632 -1.9651 0.0558 16 6 6.0268 -4.0632 0.4435 17 6 7.1860 -4.4200 -0.2829 18 6 7.2478 -5.7674 -0.1596 19 8 6.1931 -6.1292 0.5843 20 7 5.5318 -5.1717 0.9133 21 6 4.0185 -2.6329 0.1773 22 1 -0.4850 -0.8364 -0.0786 23 1 3.2323 0.1604 2.0335 24 1 2.9994 -1.5479 2.4792 25 1 5.1575 -0.7022 3.3486 26 1 5.6497 -0.2490 1.6992 27 1 5.0461 -2.9801 2.6295 28 1 7.8656 -3.7689 -0.8127 29 1 7.9982 -6.4214 -0.5788 30 1 3.4339 -3.3515 0.7518 31 1 3.9651 -2.8843 -0.8820 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259795274.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:45 Heat of formation + Delta-G solvation = 26.993725 kcal Electronic energy + Delta-G solvation = -15230.036138 eV Core-core repulsion = 12706.145991 eV Total energy + Delta-G solvation = -2523.890146 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -45.85861 -40.00258 -35.75992 -34.75591 -32.69083 -32.59370 -31.27233 -27.02301 -25.18902 -24.04528 -23.32187 -21.67154 -20.90425 -19.73491 -18.68012 -18.45618 -16.84726 -16.06626 -15.76887 -15.64922 -15.11407 -14.97988 -14.63756 -14.11017 -13.86809 -13.41141 -13.04563 -12.66177 -12.50969 -12.43923 -12.01837 -11.77689 -11.60835 -11.40559 -11.08428 -10.86218 -10.50646 -10.47127 -9.42156 -8.76770 -6.42772 0.71328 1.34028 1.42916 1.51999 1.71372 2.47016 2.55862 3.01200 3.17956 3.39251 3.63642 4.03100 4.17392 4.28665 4.35344 4.40973 4.46192 4.57800 4.63898 4.80286 4.88194 4.96941 5.06674 5.14200 5.20448 5.38296 5.63333 5.93078 5.97472 6.04086 6.27206 6.49604 7.36680 7.45381 8.57263 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.045739 B = 0.007566 C = 0.007133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 612.016572 B = 3699.837815 C = 3924.483737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C -0.024 4.024 3 Si 1.088 2.912 4 H -0.292 1.292 5 H -0.261 1.261 6 H -0.233 1.233 7 C -0.608 4.608 8 H 0.003 0.997 9 C 0.022 3.978 10 H 0.034 0.966 11 C -0.155 4.155 12 C 0.062 3.938 13 N -0.669 5.669 14 C 0.169 3.831 15 H 0.113 0.887 16 C 0.009 3.991 17 C -0.233 4.233 18 C -0.047 4.047 19 O 0.089 5.911 20 N -0.399 5.399 21 C -0.113 4.113 22 H 0.247 0.753 23 H 0.061 0.939 24 H 0.030 0.970 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.335 0.665 28 H 0.198 0.802 29 H 0.267 0.733 30 H 0.027 0.973 31 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.334 -6.071 0.553 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.221 4.221 3 Si 0.908 3.092 4 H -0.218 1.218 5 H -0.186 1.186 6 H -0.157 1.157 7 C -0.645 4.645 8 H 0.021 0.979 9 C 0.003 3.997 10 H 0.052 0.948 11 C -0.195 4.195 12 C -0.067 4.067 13 N -0.298 5.298 14 C 0.058 3.942 15 H 0.131 0.869 16 C -0.149 4.149 17 C -0.255 4.255 18 C -0.128 4.128 19 O 0.023 5.977 20 N -0.104 5.104 21 C -0.153 4.153 22 H 0.056 0.944 23 H 0.079 0.921 24 H 0.049 0.951 25 H 0.110 0.890 26 H 0.104 0.896 27 H 0.152 0.848 28 H 0.215 0.785 29 H 0.283 0.717 30 H 0.046 0.954 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 18.736 -4.562 1.360 19.331 hybrid contribution -1.388 -1.865 -0.896 2.492 sum 17.347 -6.428 0.464 18.505 Atomic orbital electron populations 1.71007 1.08419 1.29702 1.48459 1.27454 0.96022 1.06728 0.91890 0.83560 0.74974 0.70777 0.79880 1.21790 1.18598 1.15693 1.22247 0.97824 0.94237 1.50237 0.97901 1.18966 0.94020 0.93375 0.93346 0.94799 1.22644 0.97661 1.01258 0.97907 1.22134 0.92427 0.89834 1.02338 1.60912 1.59243 1.04516 1.05101 1.19917 0.93852 0.89396 0.91013 0.86937 1.23753 0.96270 0.95315 0.99584 1.23093 0.99657 0.96717 1.06030 1.26925 0.92825 0.96804 0.96201 1.84786 1.30627 1.30289 1.52021 1.73833 1.18782 0.96273 1.21494 1.22001 0.95617 0.98090 0.99608 0.94373 0.92065 0.95066 0.89000 0.89556 0.84777 0.78534 0.71719 0.95402 0.93916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.83 13.70 21.45 0.29 -60.54 16 2 C -0.02 -1.43 5.34 84.65 0.45 -0.97 16 3 Si 1.09 49.54 26.41 68.60 1.81 51.36 16 4 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 5 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 6 H -0.23 -9.10 5.58 99.48 0.55 -8.54 16 7 C -0.61 -36.02 8.82 25.60 0.23 -35.80 16 8 H 0.00 0.17 7.99 -2.91 -0.02 0.15 16 9 C 0.02 1.03 1.74 -11.46 -0.02 1.01 16 10 H 0.03 1.52 6.78 -2.39 -0.02 1.51 16 11 C -0.16 -6.49 5.05 30.64 0.15 -6.33 16 12 C 0.06 1.96 6.55 86.32 0.57 2.53 16 13 N -0.67 -21.61 6.49 -495.57 -3.22 -24.82 16 14 C 0.17 5.64 2.93 44.19 0.13 5.77 16 15 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 16 C 0.01 0.28 6.12 43.58 0.27 0.54 16 17 C -0.23 -4.93 11.12 22.40 0.25 -4.68 16 18 C -0.05 -0.79 12.30 67.18 0.83 0.04 16 19 O 0.09 2.33 11.20 71.59 0.80 3.13 16 20 N -0.40 -13.25 12.06 -49.56 -0.60 -13.84 16 21 C -0.11 -4.85 4.56 30.65 0.14 -4.71 16 22 H 0.25 16.43 8.73 -92.71 -0.81 15.62 16 23 H 0.06 2.60 4.88 -2.38 -0.01 2.59 16 24 H 0.03 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 26 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 27 H 0.34 11.52 8.79 -89.69 -0.79 10.73 16 28 H 0.20 2.87 8.06 -2.91 -0.02 2.85 16 29 H 0.27 1.18 8.06 -2.91 -0.02 1.15 16 30 H 0.03 1.32 8.14 -2.38 -0.02 1.30 16 31 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -73.66 256.31 2.24 -71.42 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.16 Total: 15.90 kcal Atomic # 6 Polarization: -45.59 SS G_CDS: 2.99 Total: -42.60 kcal Atomic # 7 Polarization: -95.68 SS G_CDS: -3.52 Total: -99.21 kcal Atomic # 8 Polarization: 2.33 SS G_CDS: 0.80 Total: 3.13 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 1.81 Total: 51.36 kcal Total: -73.66 2.24 -71.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259795274.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.410 kcal (2) G-P(sol) polarization free energy of solvation -73.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds