Wall clock time and date at job start Thu Apr 9 2020 14:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00009 * 2 1 4 4 H 1.48498 * 109.47278 * 264.80113 * 3 2 1 5 5 H 1.48506 * 109.47277 * 24.80201 * 3 2 1 6 6 H 1.48500 * 109.47212 * 144.80293 * 3 2 1 7 7 C 1.37877 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99955 * 7.12979 * 7 2 1 9 9 C 1.50698 * 119.99534 * 187.12772 * 7 2 1 10 10 H 1.08996 * 109.58048 * 333.50239 * 9 7 2 11 11 C 1.53127 * 109.52169 * 93.66261 * 9 7 2 12 12 C 1.53034 * 109.27986 * 62.24848 * 11 9 7 13 13 N 1.46846 * 109.51632 * 59.18287 * 12 11 9 14 14 C 1.46845 * 111.19916 * 298.24302 * 13 12 11 15 15 H 1.09000 * 109.46317 * 301.74881 * 14 13 12 16 16 C 1.50706 * 109.46316 * 181.76647 * 14 13 12 17 17 C 1.41374 * 126.79786 * 4.96316 * 16 14 13 18 18 C 1.35458 * 103.98023 * 180.02562 * 17 16 14 19 19 O 1.34035 * 106.44845 * 359.97438 * 18 17 16 20 20 N 1.20925 * 111.56866 * 0.02562 * 19 18 17 21 21 C 1.53039 * 109.51272 * 61.75940 * 14 13 12 22 22 H 0.97000 * 119.99732 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.50193 * 182.18963 * 11 9 7 24 24 H 1.08999 * 109.50053 * 302.30268 * 11 9 7 25 25 H 1.09000 * 109.46003 * 179.19676 * 12 11 9 26 26 H 1.09005 * 109.46008 * 299.17108 * 12 11 9 27 27 H 1.00905 * 110.99373 * 174.14993 * 13 12 11 28 28 H 1.07999 * 128.01447 * 359.97438 * 17 16 14 29 29 H 1.08006 * 126.77124 * 180.02562 * 18 17 16 30 30 H 1.08992 * 109.50867 * 60.75932 * 21 14 13 31 31 H 1.09003 * 109.49972 * 180.83857 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6065 1.9830 -1.3943 5 1 1.3960 2.6819 0.5873 6 1 3.4875 1.4744 0.8070 7 6 2.0045 -1.1941 0.0005 8 1 1.4707 -2.1258 -0.1151 9 6 3.5027 -1.1990 0.1625 10 1 3.9120 -0.2547 -0.1963 11 6 3.8570 -1.3814 1.6410 12 6 3.3326 -2.7360 2.1228 13 7 3.9347 -3.8086 1.3208 14 6 3.5692 -3.6816 -0.0957 15 1 2.4840 -3.7065 -0.1945 16 6 4.1707 -4.8235 -0.8739 17 6 4.8848 -5.9240 -0.3470 18 6 5.2090 -6.6568 -1.4391 19 8 4.7068 -6.0044 -2.4968 20 7 4.1356 -4.9918 -2.1642 21 6 4.1008 -2.3552 -0.6438 22 1 -0.4850 0.8401 -0.0004 23 1 4.9395 -1.3461 1.7628 24 1 3.3981 -0.5845 2.2261 25 1 3.5957 -2.8751 3.1714 26 1 2.2485 -2.7655 2.0134 27 1 3.6787 -4.7160 1.6803 28 1 5.1186 -6.1318 0.6867 29 1 5.7623 -7.5843 -1.4545 30 1 5.1871 -2.3352 -0.5580 31 1 3.8166 -2.2544 -1.6913 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259795298.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:47 Heat of formation + Delta-G solvation = 57.508083 kcal Electronic energy + Delta-G solvation = -15359.140845 eV Core-core repulsion = 12836.573901 eV Total energy + Delta-G solvation = -2522.566944 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.64774 -38.24796 -34.12375 -32.69726 -31.55903 -30.96876 -29.61491 -25.42460 -23.70257 -22.85790 -21.74127 -20.43785 -18.67956 -17.73603 -17.23621 -16.30137 -15.69002 -14.81590 -14.21386 -13.92408 -13.46970 -13.11697 -12.68898 -12.52661 -12.41272 -11.88994 -11.67390 -11.09114 -10.93727 -10.65335 -10.44882 -9.83156 -9.78142 -9.55450 -9.43327 -9.13635 -9.03383 -8.50970 -7.78641 -6.07674 -4.06173 1.75646 2.57598 3.29736 3.38008 3.39944 3.51402 4.28240 4.42751 4.81302 5.00452 5.24836 5.41334 5.63054 5.75141 5.85296 5.97608 6.02711 6.13637 6.28265 6.37375 6.54025 6.68717 6.78511 6.86943 7.02325 7.17391 7.28733 7.66332 7.80480 7.88664 8.50964 8.60317 8.95361 9.56232 11.05278 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.041555 B = 0.008175 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.650959 B = 3424.142683 C = 3672.328035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.071 3.929 3 Si 0.876 3.124 4 H -0.277 1.277 5 H -0.291 1.291 6 H -0.265 1.265 7 C -0.510 4.510 8 H 0.072 0.928 9 C 0.009 3.991 10 H 0.034 0.966 11 C -0.107 4.107 12 C 0.071 3.929 13 N -0.683 5.683 14 C 0.170 3.830 15 H 0.072 0.928 16 C 0.032 3.968 17 C -0.218 4.218 18 C -0.079 4.079 19 O 0.092 5.908 20 N -0.362 5.362 21 C -0.085 4.085 22 H 0.263 0.737 23 H 0.038 0.962 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.329 0.671 28 H 0.170 0.830 29 H 0.211 0.789 30 H 0.043 0.957 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.920 -10.680 1.588 14.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.704 3.296 4 H -0.203 1.203 5 H -0.217 1.217 6 H -0.189 1.189 7 C -0.548 4.548 8 H 0.090 0.910 9 C -0.010 4.010 10 H 0.052 0.948 11 C -0.145 4.145 12 C -0.058 4.058 13 N -0.314 5.314 14 C 0.060 3.940 15 H 0.089 0.911 16 C -0.127 4.127 17 C -0.240 4.240 18 C -0.161 4.161 19 O 0.027 5.973 20 N -0.066 5.066 21 C -0.123 4.123 22 H 0.073 0.927 23 H 0.057 0.943 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.145 0.855 28 H 0.188 0.812 29 H 0.227 0.773 30 H 0.062 0.938 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.812 -9.518 0.492 13.679 hybrid contribution -0.254 0.220 0.878 0.940 sum 9.558 -9.298 1.371 13.405 Atomic orbital electron populations 1.69919 1.06330 1.26931 1.50716 1.25056 0.94645 0.98965 0.94372 0.86873 0.80208 0.83748 0.78772 1.20273 1.21715 1.18940 1.20987 0.89455 0.94432 1.49909 0.90991 1.19227 0.96856 0.93788 0.91172 0.94811 1.21745 0.97815 0.95293 0.99659 1.21795 0.97957 0.91342 0.94658 1.60350 1.63642 1.05835 1.01565 1.19719 0.97626 0.90211 0.86455 0.91092 1.23936 1.00109 0.98566 0.90083 1.22675 1.04219 0.95697 1.01389 1.25946 1.02765 1.01019 0.86368 1.84848 1.52022 1.26530 1.33935 1.73844 1.14901 1.01817 1.16045 1.21511 0.98035 0.93139 0.99657 0.92730 0.94287 0.92631 0.92463 0.93309 0.85456 0.81213 0.77252 0.93802 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 3 Si 0.88 21.58 27.04 -169.99 -4.60 16.98 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.22 6.77 56.52 0.38 -5.84 16 7 C -0.51 -13.93 7.42 -34.44 -0.26 -14.18 16 8 H 0.07 2.13 6.43 -52.49 -0.34 1.80 16 9 C 0.01 0.20 2.26 -91.64 -0.21 0.00 16 10 H 0.03 0.81 5.30 -51.93 -0.28 0.54 16 11 C -0.11 -2.23 5.59 -26.65 -0.15 -2.38 16 12 C 0.07 1.33 6.34 -3.84 -0.02 1.30 16 13 N -0.68 -11.71 6.15 -107.98 -0.66 -12.37 16 14 C 0.17 3.31 2.77 -68.87 -0.19 3.12 16 15 H 0.07 1.58 6.42 -51.93 -0.33 1.25 16 16 C 0.03 0.57 6.50 -82.10 -0.53 0.03 16 17 C -0.22 -2.89 10.20 -39.38 -0.40 -3.29 16 18 C -0.08 -0.89 12.30 29.74 0.37 -0.52 16 19 O 0.09 1.38 11.20 17.19 0.19 1.57 16 20 N -0.36 -6.59 12.06 33.42 0.40 -6.19 16 21 C -0.08 -1.82 4.84 -26.65 -0.13 -1.95 16 22 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 23 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 24 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 1.03 7.29 -51.93 -0.38 0.65 16 27 H 0.33 4.77 8.05 -39.29 -0.32 4.46 16 28 H 0.17 1.84 7.71 -52.49 -0.40 1.44 16 29 H 0.21 1.25 8.06 -52.48 -0.42 0.82 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 253.35 15.07 3.82 3.82 Total: -1.00 -31.01 253.35 -5.43 -36.44 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -3.74 Total: 2.25 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -1.62 Total: -15.95 kcal Atomic # 7 Polarization: -45.62 SS G_CDS: 0.51 Total: -45.11 kcal Atomic # 8 Polarization: 1.38 SS G_CDS: 0.19 Total: 1.57 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.60 Total: 16.98 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -31.01 -5.43 -36.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259795298.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.952 kcal (2) G-P(sol) polarization free energy of solvation -31.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds