Wall clock time and date at job start Thu Apr 9 2020 14:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 120.00009 * 2 1 4 4 H 1.48498 * 109.47278 * 264.80113 * 3 2 1 5 5 H 1.48506 * 109.47277 * 24.80201 * 3 2 1 6 6 H 1.48500 * 109.47212 * 144.80293 * 3 2 1 7 7 C 1.37877 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99955 * 7.12979 * 7 2 1 9 9 C 1.50698 * 119.99534 * 187.12772 * 7 2 1 10 10 H 1.08996 * 109.58048 * 333.50239 * 9 7 2 11 11 C 1.53127 * 109.52169 * 93.66261 * 9 7 2 12 12 C 1.53034 * 109.27986 * 62.24848 * 11 9 7 13 13 N 1.46846 * 109.51632 * 59.18287 * 12 11 9 14 14 C 1.46845 * 111.19916 * 298.24302 * 13 12 11 15 15 H 1.09000 * 109.46317 * 301.74881 * 14 13 12 16 16 C 1.50706 * 109.46316 * 181.76647 * 14 13 12 17 17 C 1.41374 * 126.79786 * 4.96316 * 16 14 13 18 18 C 1.35458 * 103.98023 * 180.02562 * 17 16 14 19 19 O 1.34035 * 106.44845 * 359.97438 * 18 17 16 20 20 N 1.20925 * 111.56866 * 0.02562 * 19 18 17 21 21 C 1.53039 * 109.51272 * 61.75940 * 14 13 12 22 22 H 0.97000 * 119.99732 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.50193 * 182.18963 * 11 9 7 24 24 H 1.08999 * 109.50053 * 302.30268 * 11 9 7 25 25 H 1.09000 * 109.46003 * 179.19676 * 12 11 9 26 26 H 1.09005 * 109.46008 * 299.17108 * 12 11 9 27 27 H 1.00905 * 110.99373 * 174.14993 * 13 12 11 28 28 H 1.07999 * 128.01447 * 359.97438 * 17 16 14 29 29 H 1.08006 * 126.77124 * 180.02562 * 18 17 16 30 30 H 1.08992 * 109.50867 * 60.75932 * 21 14 13 31 31 H 1.09003 * 109.49972 * 180.83857 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6065 1.9830 -1.3943 5 1 1.3960 2.6819 0.5873 6 1 3.4875 1.4744 0.8070 7 6 2.0045 -1.1941 0.0005 8 1 1.4707 -2.1258 -0.1151 9 6 3.5027 -1.1990 0.1625 10 1 3.9120 -0.2547 -0.1963 11 6 3.8570 -1.3814 1.6410 12 6 3.3326 -2.7360 2.1228 13 7 3.9347 -3.8086 1.3208 14 6 3.5692 -3.6816 -0.0957 15 1 2.4840 -3.7065 -0.1945 16 6 4.1707 -4.8235 -0.8739 17 6 4.8848 -5.9240 -0.3470 18 6 5.2090 -6.6568 -1.4391 19 8 4.7068 -6.0044 -2.4968 20 7 4.1356 -4.9918 -2.1642 21 6 4.1008 -2.3552 -0.6438 22 1 -0.4850 0.8401 -0.0004 23 1 4.9395 -1.3461 1.7628 24 1 3.3981 -0.5845 2.2261 25 1 3.5957 -2.8751 3.1714 26 1 2.2485 -2.7655 2.0134 27 1 3.6787 -4.7160 1.6803 28 1 5.1186 -6.1318 0.6867 29 1 5.7623 -7.5843 -1.4545 30 1 5.1871 -2.3352 -0.5580 31 1 3.8166 -2.2544 -1.6913 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259795298.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:47 Heat of formation + Delta-G solvation = 34.645092 kcal Electronic energy + Delta-G solvation = -15360.132259 eV Core-core repulsion = 12836.573901 eV Total energy + Delta-G solvation = -2523.558358 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -45.84649 -39.87387 -35.61532 -34.49606 -32.97040 -32.55033 -31.13811 -27.42391 -25.21363 -24.23994 -23.23499 -21.71661 -20.60363 -18.95227 -18.49601 -18.23348 -17.16425 -16.25241 -16.14464 -15.44963 -15.03232 -14.52175 -14.38242 -14.26135 -13.86828 -13.70754 -13.17995 -12.87550 -12.48096 -12.26972 -12.12477 -11.82870 -11.37859 -11.21276 -10.99447 -10.79159 -10.62559 -10.47464 -9.36042 -8.28333 -6.30443 0.74644 1.33307 1.34619 1.39454 1.45537 2.34579 2.59153 2.95251 3.07820 3.56434 3.84298 4.15682 4.23072 4.33571 4.42351 4.48776 4.65488 4.67818 4.86684 4.89197 5.00970 5.04886 5.15637 5.24855 5.31646 5.34367 5.54146 5.75220 6.06762 6.30083 6.54365 6.74776 7.34331 7.50516 8.88132 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.041555 B = 0.008175 C = 0.007623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.650959 B = 3424.142683 C = 3672.328035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.010 3.990 3 Si 0.939 3.061 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.242 1.242 7 C -0.502 4.502 8 H 0.031 0.969 9 C 0.003 3.997 10 H 0.031 0.969 11 C -0.105 4.105 12 C 0.075 3.925 13 N -0.662 5.662 14 C 0.179 3.821 15 H 0.026 0.974 16 C 0.002 3.998 17 C -0.224 4.224 18 C -0.049 4.049 19 O 0.093 5.907 20 N -0.405 5.405 21 C -0.080 4.080 22 H 0.264 0.736 23 H 0.063 0.937 24 H 0.047 0.953 25 H 0.095 0.905 26 H 0.013 0.987 27 H 0.348 0.652 28 H 0.197 0.803 29 H 0.269 0.731 30 H 0.060 0.940 31 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.945 -11.937 2.610 17.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.186 4.186 3 Si 0.764 3.236 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.165 1.165 7 C -0.540 4.540 8 H 0.049 0.951 9 C -0.016 4.016 10 H 0.049 0.951 11 C -0.144 4.144 12 C -0.054 4.054 13 N -0.295 5.295 14 C 0.068 3.932 15 H 0.044 0.956 16 C -0.155 4.155 17 C -0.245 4.245 18 C -0.130 4.130 19 O 0.026 5.974 20 N -0.109 5.109 21 C -0.118 4.118 22 H 0.073 0.927 23 H 0.082 0.918 24 H 0.066 0.934 25 H 0.113 0.887 26 H 0.031 0.969 27 H 0.167 0.833 28 H 0.214 0.786 29 H 0.285 0.715 30 H 0.078 0.922 31 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.851 -10.788 1.528 16.849 hybrid contribution -1.188 0.436 0.514 1.366 sum 11.663 -10.352 2.042 15.728 Atomic orbital electron populations 1.70070 1.08223 1.27854 1.53070 1.25909 0.95385 1.02872 0.94469 0.85851 0.79626 0.78992 0.79147 1.19981 1.21460 1.16490 1.21185 0.91663 0.92803 1.48388 0.95060 1.19270 0.94015 0.94575 0.93720 0.95121 1.21673 0.99317 0.96301 0.97074 1.21742 0.95813 0.91022 0.96850 1.60329 1.62491 1.06591 1.00078 1.19325 0.95145 0.90538 0.88196 0.95611 1.23806 1.01916 0.99503 0.90321 1.22962 1.03899 0.94355 1.03298 1.26969 1.00361 1.01382 0.84278 1.84792 1.51587 1.25861 1.35164 1.73856 1.16549 1.03635 1.16884 1.21372 0.98723 0.93727 0.98016 0.92746 0.91793 0.93415 0.88680 0.96866 0.83315 0.78600 0.71506 0.92171 0.94401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.21 13.96 21.45 0.30 -59.91 16 2 C 0.01 0.59 5.47 84.65 0.46 1.05 16 3 Si 0.94 44.93 27.04 68.60 1.86 46.78 16 4 H -0.27 -12.91 7.11 99.48 0.71 -12.21 16 5 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 6 H -0.24 -10.56 6.77 99.48 0.67 -9.89 16 7 C -0.50 -28.63 7.42 25.60 0.19 -28.44 16 8 H 0.03 2.00 6.43 -2.91 -0.02 1.98 16 9 C 0.00 0.15 2.26 -11.46 -0.03 0.13 16 10 H 0.03 1.45 5.30 -2.39 -0.01 1.44 16 11 C -0.11 -4.25 5.59 30.65 0.17 -4.08 16 12 C 0.07 2.70 6.34 86.32 0.55 3.25 16 13 N -0.66 -21.66 6.15 -495.56 -3.05 -24.71 16 14 C 0.18 7.06 2.77 44.19 0.12 7.18 16 15 H 0.03 1.25 6.42 -2.39 -0.02 1.23 16 16 C 0.00 0.08 6.50 43.58 0.28 0.36 16 17 C -0.22 -5.18 10.20 22.40 0.23 -4.96 16 18 C -0.05 -0.89 12.30 67.18 0.83 -0.06 16 19 O 0.09 2.58 11.20 71.68 0.80 3.38 16 20 N -0.40 -14.69 12.06 -49.56 -0.60 -15.28 16 21 C -0.08 -3.45 4.84 30.65 0.15 -3.31 16 22 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 23 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 26 H 0.01 0.57 7.29 -2.38 -0.02 0.55 16 27 H 0.35 9.32 8.05 -89.69 -0.72 8.59 16 28 H 0.20 3.36 7.71 -2.91 -0.02 3.34 16 29 H 0.27 1.39 8.06 -2.91 -0.02 1.37 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -71.72 253.35 2.65 -69.07 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: 0.39 Total: 9.52 kcal Atomic # 6 Polarization: -31.82 SS G_CDS: 2.95 Total: -28.86 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -3.35 Total: -99.90 kcal Atomic # 8 Polarization: 2.58 SS G_CDS: 0.80 Total: 3.38 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.86 Total: 46.78 kcal Total: -71.72 2.65 -69.07 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259795298.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.714 kcal (2) G-P(sol) polarization free energy of solvation -71.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.069 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds