Wall clock time and date at job start Thu Apr 9 2020 14:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99829 * 2 1 4 4 H 1.48501 * 109.46891 * 269.99422 * 3 2 1 5 5 H 1.48499 * 109.47301 * 29.99060 * 3 2 1 6 6 H 1.48495 * 109.47520 * 149.99775 * 3 2 1 7 7 C 1.37879 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99777 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99868 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.57596 * 60.15426 * 9 7 2 11 11 C 1.53123 * 109.52399 * 299.99694 * 9 7 2 12 12 C 1.53039 * 109.31189 * 182.46470 * 11 9 7 13 13 N 1.46842 * 109.52266 * 59.15550 * 12 11 9 14 14 C 1.46849 * 111.20050 * 298.25785 * 13 12 11 15 15 H 1.08995 * 109.46417 * 301.72694 * 14 13 12 16 16 C 1.50702 * 109.45851 * 181.74705 * 14 13 12 17 17 C 1.41379 * 128.00243 * 140.00329 * 16 14 13 18 18 N 1.30176 * 106.39679 * 179.97438 * 17 16 14 19 19 O 1.20922 * 111.60231 * 359.97438 * 18 17 16 20 20 C 1.34039 * 111.56873 * 359.76856 * 19 18 17 21 21 C 1.53036 * 109.52274 * 61.74759 * 14 13 12 22 22 H 0.96998 * 120.00078 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.50371 * 62.50019 * 11 9 7 24 24 H 1.09003 * 109.50070 * 302.42179 * 11 9 7 25 25 H 1.08995 * 109.46501 * 179.17754 * 12 11 9 26 26 H 1.09002 * 109.45552 * 299.15457 * 12 11 9 27 27 H 1.00898 * 111.00242 * 62.36287 * 13 12 11 28 28 H 1.08004 * 126.80328 * 359.94022 * 17 16 14 29 29 H 1.07997 * 126.78398 * 180.28090 * 20 19 18 30 30 H 1.09000 * 109.50390 * 60.75234 * 21 14 13 31 31 H 1.08997 * 109.50325 * 180.87997 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6998 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6262 -2.5601 -0.8905 11 6 0.3699 -2.5813 1.2501 12 6 -0.3458 -3.9337 1.2766 13 7 0.6480 -5.0148 1.2847 14 6 1.4743 -4.9854 0.0711 15 1 0.8341 -5.0745 -0.8065 16 6 2.4495 -6.1340 0.0999 17 6 2.8491 -6.9638 -0.9727 18 7 3.7031 -7.8143 -0.4810 19 8 3.8815 -7.6332 0.7012 20 6 3.1511 -6.6063 1.1580 21 6 2.2445 -3.6644 0.0086 22 1 -0.4850 0.8400 -0.0004 23 1 -0.3680 -1.7793 1.2283 24 1 0.9907 -2.4806 2.1404 25 1 -0.9626 -4.0007 2.1728 26 1 -0.9773 -4.0277 0.3932 27 1 1.2214 -4.9727 2.1138 28 1 2.5120 -6.9043 -1.9971 29 1 3.1254 -6.2307 2.1703 30 1 2.8952 -3.5810 0.8791 31 1 2.8458 -3.6364 -0.9001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259795742.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:52 Heat of formation + Delta-G solvation = 31.737693 kcal Electronic energy + Delta-G solvation = -15159.304296 eV Core-core repulsion = 12635.619864 eV Total energy + Delta-G solvation = -2523.684432 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -45.83168 -39.82097 -35.68811 -34.62557 -32.91164 -32.20603 -30.57014 -27.26684 -25.02035 -23.96695 -23.31612 -21.78649 -20.83289 -19.00354 -18.40169 -18.27780 -16.81664 -16.27573 -15.82934 -15.30008 -15.13629 -14.65029 -14.28097 -13.98549 -13.78324 -13.23596 -12.95355 -12.69676 -12.58505 -12.33630 -12.16327 -11.94189 -11.40272 -11.28154 -11.15774 -10.80770 -10.48475 -10.31525 -9.18922 -8.08637 -6.24958 0.65327 1.35688 1.38301 1.40362 1.49199 2.39623 2.42847 3.15794 3.35270 3.43958 3.94013 4.01531 4.27699 4.37431 4.45096 4.58351 4.71860 4.75861 4.84716 4.92029 5.05400 5.13700 5.25520 5.29588 5.48492 5.60587 5.94797 5.96609 6.25457 6.36474 6.56350 6.87202 7.34158 7.43567 8.92680 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.043107 B = 0.007078 C = 0.006456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.383858 B = 3955.146650 C = 4335.752132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.016 3.984 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.536 4.536 8 H 0.047 0.953 9 C 0.046 3.954 10 H -0.007 1.007 11 C -0.136 4.136 12 C 0.067 3.933 13 N -0.669 5.669 14 C 0.172 3.828 15 H 0.079 0.921 16 C -0.194 4.194 17 C -0.007 4.007 18 N -0.394 5.394 19 O 0.088 5.912 20 C -0.039 4.039 21 C -0.120 4.120 22 H 0.261 0.739 23 H 0.061 0.939 24 H 0.032 0.968 25 H 0.083 0.917 26 H 0.056 0.944 27 H 0.343 0.657 28 H 0.204 0.796 29 H 0.246 0.754 30 H 0.053 0.947 31 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.879 -10.091 3.349 11.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.183 4.183 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.574 4.574 8 H 0.066 0.934 9 C 0.028 3.972 10 H 0.011 0.989 11 C -0.176 4.176 12 C -0.062 4.062 13 N -0.298 5.298 14 C 0.062 3.938 15 H 0.097 0.903 16 C -0.199 4.199 17 C -0.186 4.186 18 N -0.100 5.100 19 O 0.025 5.975 20 C -0.120 4.120 21 C -0.159 4.159 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.051 0.949 25 H 0.101 0.899 26 H 0.075 0.925 27 H 0.161 0.839 28 H 0.221 0.779 29 H 0.262 0.738 30 H 0.071 0.929 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.996 -11.477 2.595 12.143 hybrid contribution 0.271 2.793 -0.035 2.806 sum 3.267 -8.685 2.560 9.626 Atomic orbital electron populations 1.69999 1.06995 1.27089 1.51232 1.25679 0.95646 1.02143 0.94864 0.85702 0.78830 0.79874 0.78136 1.20409 1.20778 1.19460 1.21565 0.92853 0.92387 1.50636 0.93432 1.18637 0.92967 0.92023 0.93605 0.98908 1.22104 0.99806 0.97930 0.97745 1.21962 0.94196 0.88287 1.01805 1.60872 1.18370 1.46572 1.03963 1.19592 0.90831 0.88716 0.94691 0.90278 1.21336 1.03414 1.01489 0.93642 1.25281 0.96864 0.93342 1.03076 1.73830 1.19560 1.23544 0.93068 1.84747 1.52647 1.42002 1.18067 1.26241 0.93408 0.89983 1.02390 1.22174 0.98351 0.94723 1.00648 0.93026 0.92006 0.94919 0.89906 0.92519 0.83904 0.77906 0.73813 0.92862 0.93740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.55 11.35 21.45 0.24 -51.30 16 2 C 0.02 0.85 5.30 84.65 0.45 1.30 16 3 Si 0.95 42.96 29.54 68.60 2.03 44.98 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 7 C -0.54 -28.89 8.57 25.60 0.22 -28.67 16 8 H 0.05 2.55 7.75 -2.91 -0.02 2.53 16 9 C 0.05 2.20 2.17 -11.46 -0.02 2.17 16 10 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 11 C -0.14 -5.94 5.10 30.65 0.16 -5.78 16 12 C 0.07 2.29 6.56 86.33 0.57 2.86 16 13 N -0.67 -19.75 6.44 -495.57 -3.19 -22.94 16 14 C 0.17 5.40 2.94 44.19 0.13 5.53 16 15 H 0.08 2.62 8.14 -2.39 -0.02 2.61 16 16 C -0.19 -5.27 5.30 -19.73 -0.10 -5.37 16 17 C -0.01 -0.19 12.16 85.71 1.04 0.85 16 18 N -0.39 -11.28 12.07 -59.26 -0.72 -11.99 16 19 O 0.09 2.27 11.20 71.64 0.80 3.08 16 20 C -0.04 -0.87 11.72 67.18 0.79 -0.09 16 21 C -0.12 -4.57 4.57 30.65 0.14 -4.43 16 22 H 0.26 14.04 8.31 -92.71 -0.77 13.27 16 23 H 0.06 3.13 6.15 -2.39 -0.01 3.12 16 24 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 25 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 26 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.34 8.83 8.10 -89.70 -0.73 8.11 16 28 H 0.20 4.51 8.06 -2.91 -0.02 4.48 16 29 H 0.25 3.60 7.77 -2.91 -0.02 3.58 16 30 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -60.61 259.42 2.93 -57.68 By element: Atomic # 1 Polarization: 11.72 SS G_CDS: 0.40 Total: 12.13 kcal Atomic # 6 Polarization: -34.99 SS G_CDS: 3.36 Total: -31.63 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -3.66 Total: -86.23 kcal Atomic # 8 Polarization: 2.27 SS G_CDS: 0.80 Total: 3.08 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -60.61 2.93 -57.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259795742.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.414 kcal (2) G-P(sol) polarization free energy of solvation -60.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds