Wall clock time and date at job start Thu Apr 9 2020 14:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99869 * 2 1 4 4 H 1.48503 * 109.47136 * 270.00051 * 3 2 1 5 5 H 1.48504 * 109.47039 * 150.00103 * 3 2 1 6 6 H 1.48507 * 109.47275 * 30.00242 * 3 2 1 7 7 C 1.37873 * 119.99927 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00077 * 173.32113 * 7 2 1 9 9 C 1.50694 * 120.00212 * 353.31689 * 7 2 1 10 10 H 1.08992 * 109.52663 * 328.39392 * 9 7 2 11 11 C 1.53123 * 109.51984 * 88.58031 * 9 7 2 12 12 C 1.53037 * 109.28001 * 177.56127 * 11 9 7 13 13 N 1.46849 * 109.52173 * 300.81800 * 12 11 9 14 14 C 1.46847 * 111.19644 * 61.74446 * 13 12 11 15 15 H 1.08998 * 109.45875 * 58.26175 * 14 13 12 16 16 C 1.50699 * 109.46462 * 178.24441 * 14 13 12 17 17 C 1.41380 * 128.00895 * 39.72032 * 16 14 13 18 18 N 1.30170 * 106.39514 * 179.90099 * 17 16 14 19 19 O 1.20916 * 111.60701 * 0.39668 * 18 17 16 20 20 C 1.34037 * 111.56663 * 359.73956 * 19 18 17 21 21 C 1.53046 * 109.52145 * 298.25573 * 14 13 12 22 22 H 0.97000 * 119.99683 * 174.57224 * 1 2 3 23 23 H 1.09003 * 109.50267 * 297.49747 * 11 9 7 24 24 H 1.09001 * 109.50678 * 57.62008 * 11 9 7 25 25 H 1.08998 * 109.46366 * 180.80399 * 12 11 9 26 26 H 1.09001 * 109.46160 * 60.83276 * 12 11 9 27 27 H 1.00896 * 111.00052 * 185.83414 * 13 12 11 28 28 H 1.08005 * 126.80149 * 0.04606 * 17 16 14 29 29 H 1.08002 * 126.77368 * 179.97438 * 20 19 18 30 30 H 1.08996 * 109.50308 * 299.23662 * 21 14 13 31 31 H 1.09001 * 109.50170 * 179.11866 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 3.5467 1.4402 0.7000 6 1 1.4465 2.6527 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0790 -1.1972 -0.1093 9 6 1.2587 -2.4947 0.1508 10 1 0.3776 -2.3392 0.7731 11 6 0.8293 -3.0017 -1.2288 12 6 0.1261 -4.3522 -1.0745 13 7 1.0406 -5.3123 -0.4433 14 6 1.4294 -4.8698 0.9019 15 1 0.5371 -4.7462 1.5155 16 6 2.3311 -5.9016 1.5289 17 6 3.3609 -6.6482 0.9117 18 7 3.8674 -7.4105 1.8374 19 8 3.3108 -7.2517 2.8990 20 6 2.3386 -6.3329 2.8129 21 6 2.1714 -3.5346 0.8065 22 1 -0.4850 -0.8363 -0.0795 23 1 0.1450 -2.2851 -1.6831 24 1 1.7079 -3.1193 -1.8631 25 1 -0.1683 -4.7227 -2.0564 26 1 -0.7600 -4.2312 -0.4514 27 1 0.6340 -6.2353 -0.4167 28 1 3.6681 -6.5948 -0.1223 29 1 1.6892 -6.0022 3.6100 30 1 3.0712 -3.6606 0.2043 31 1 2.4461 -3.1987 1.8064 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259795749.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:15:54 Heat of formation + Delta-G solvation = 47.429599 kcal Electronic energy + Delta-G solvation = -15146.901796 eV Core-core repulsion = 12623.897816 eV Total energy + Delta-G solvation = -2523.003980 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -44.77470 -38.26237 -34.33318 -33.18901 -31.84393 -30.48408 -29.38781 -25.11395 -23.62367 -22.52038 -21.97071 -20.69011 -18.96608 -17.82175 -17.34305 -16.77335 -15.84429 -14.56236 -14.27632 -13.83403 -13.67891 -13.48069 -12.90005 -12.61091 -12.12332 -11.79070 -11.34500 -11.28472 -10.81802 -10.55939 -10.46403 -10.13047 -10.10722 -9.65866 -9.45619 -9.15137 -8.52164 -8.32343 -8.04934 -6.36662 -4.07274 1.62270 2.44692 3.37891 3.42865 3.45781 3.61724 4.30798 4.52388 4.66912 4.96381 5.17164 5.31318 5.45263 5.67595 5.69100 5.83945 5.90424 5.95631 6.19905 6.25273 6.41801 6.48034 6.80274 6.86858 7.05933 7.29513 7.51445 7.61221 7.74160 8.23570 8.37892 8.44841 8.86812 9.64062 11.01615 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.039007 B = 0.007219 C = 0.006525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.653834 B = 3877.873455 C = 4290.307190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.020 3.980 3 Si 1.065 2.935 4 H -0.289 1.289 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.591 4.591 8 H 0.048 0.952 9 C 0.031 3.969 10 H 0.028 0.972 11 C -0.107 4.107 12 C 0.058 3.942 13 N -0.680 5.680 14 C 0.161 3.839 15 H 0.044 0.956 16 C -0.182 4.182 17 C 0.015 3.985 18 N -0.377 5.377 19 O 0.090 5.910 20 C -0.069 4.069 21 C -0.088 4.088 22 H 0.270 0.730 23 H 0.056 0.944 24 H 0.054 0.946 25 H 0.062 0.938 26 H 0.022 0.978 27 H 0.330 0.670 28 H 0.191 0.809 29 H 0.213 0.787 30 H 0.057 0.943 31 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.161 -10.793 2.730 11.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.184 4.184 3 Si 0.894 3.106 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.629 4.629 8 H 0.067 0.933 9 C 0.013 3.987 10 H 0.046 0.954 11 C -0.146 4.146 12 C -0.070 4.070 13 N -0.311 5.311 14 C 0.051 3.949 15 H 0.061 0.939 16 C -0.186 4.186 17 C -0.164 4.164 18 N -0.082 5.082 19 O 0.026 5.974 20 C -0.151 4.151 21 C -0.126 4.126 22 H 0.081 0.919 23 H 0.074 0.926 24 H 0.073 0.927 25 H 0.080 0.920 26 H 0.040 0.960 27 H 0.146 0.854 28 H 0.208 0.792 29 H 0.230 0.770 30 H 0.076 0.924 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.509 -9.776 2.537 10.407 hybrid contribution -1.242 -1.191 0.078 1.723 sum 1.267 -10.967 2.615 11.345 Atomic orbital electron populations 1.70771 1.06907 1.30824 1.46482 1.25789 0.96480 1.02529 0.93568 0.83605 0.74857 0.75404 0.76742 1.21536 1.21499 1.20971 1.21950 0.94721 0.91675 1.54546 0.93337 1.18899 0.94940 0.93302 0.91604 0.95420 1.21831 0.99202 0.92292 1.01242 1.22077 0.93085 0.94542 0.97342 1.60272 1.46043 1.04840 1.19897 1.19885 0.94339 0.92451 0.88219 0.93865 1.21587 1.01298 1.02015 0.93707 1.24945 0.95366 0.94806 1.01289 1.73841 1.19043 1.22596 0.92756 1.84774 1.37345 1.46749 1.28573 1.25774 0.95540 0.94169 0.99623 1.21661 0.99159 0.91189 1.00555 0.91925 0.92566 0.92693 0.91968 0.95956 0.85361 0.79211 0.77022 0.92385 0.92771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.87 13.55 55.43 0.75 -26.12 16 2 C 0.02 0.57 5.45 -17.82 -0.10 0.47 16 3 Si 1.07 24.89 29.91 -169.99 -5.08 19.80 16 4 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.59 -16.15 8.31 -34.44 -0.29 -16.44 16 8 H 0.05 1.34 7.82 -52.48 -0.41 0.93 16 9 C 0.03 0.75 1.80 -91.65 -0.16 0.58 16 10 H 0.03 0.71 6.99 -51.93 -0.36 0.35 16 11 C -0.11 -2.32 5.28 -26.65 -0.14 -2.46 16 12 C 0.06 1.01 6.55 -3.83 -0.03 0.99 16 13 N -0.68 -10.81 6.33 -107.98 -0.68 -11.50 16 14 C 0.16 2.67 2.93 -68.87 -0.20 2.47 16 15 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 16 C -0.18 -2.67 5.19 -104.42 -0.54 -3.21 16 17 C 0.01 0.22 11.95 -17.06 -0.20 0.02 16 18 N -0.38 -5.79 12.07 30.35 0.37 -5.42 16 19 O 0.09 1.24 11.20 17.19 0.19 1.44 16 20 C -0.07 -0.86 12.26 29.74 0.36 -0.50 16 21 C -0.09 -1.79 4.62 -26.65 -0.12 -1.91 16 22 H 0.27 7.82 6.37 -40.82 -0.26 7.56 16 23 H 0.06 1.31 7.67 -51.93 -0.40 0.91 16 24 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.33 4.50 8.78 -39.29 -0.35 4.15 16 28 H 0.19 2.62 8.06 -52.48 -0.42 2.20 16 29 H 0.21 1.84 8.06 -52.49 -0.42 1.42 16 30 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 261.33 15.07 3.94 3.94 Total: -1.00 -29.75 261.33 -5.89 -35.65 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -3.95 Total: 2.21 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: -1.42 Total: -20.00 kcal Atomic # 7 Polarization: -43.47 SS G_CDS: 0.43 Total: -43.04 kcal Atomic # 8 Polarization: 1.24 SS G_CDS: 0.19 Total: 1.44 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -29.75 -5.89 -35.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259795749.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.076 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds