Wall clock time and date at job start Thu Apr 9 2020 14:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99758 * 2 1 4 4 H 1.48496 * 109.47305 * 269.99831 * 3 2 1 5 5 H 1.48504 * 109.47078 * 29.99992 * 3 2 1 6 6 H 1.48506 * 109.47132 * 149.99669 * 3 2 1 7 7 C 1.37878 * 120.00135 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99524 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00118 * 359.97438 * 7 2 1 10 10 H 1.09008 * 109.46048 * 300.02935 * 9 7 2 11 11 C 1.53039 * 109.46406 * 180.02562 * 9 7 2 12 12 C 1.53126 * 109.28009 * 180.80481 * 11 9 7 13 13 H 1.09000 * 109.52323 * 177.62249 * 12 11 9 14 14 C 1.50702 * 109.52156 * 297.75393 * 12 11 9 15 15 C 1.34331 * 126.43724 * 239.70795 * 14 12 11 16 16 N 1.34478 * 107.66803 * 179.87704 * 15 14 12 17 17 C 1.30258 * 108.69943 * 0.39459 * 16 15 14 18 18 O 1.33967 * 108.75974 * 359.75939 * 17 16 15 19 19 C 1.53099 * 109.15071 * 57.65227 * 12 11 9 20 20 C 1.53034 * 109.29509 * 302.33888 * 19 12 11 21 21 N 1.46847 * 109.51345 * 59.18740 * 20 19 12 22 22 H 0.97000 * 120.00062 * 0.02562 * 1 2 3 23 23 H 1.08994 * 109.50227 * 300.74306 * 11 9 7 24 24 H 1.09000 * 109.50337 * 60.86531 * 11 9 7 25 25 H 1.08002 * 126.16546 * 0.02562 * 15 14 12 26 26 H 1.07997 * 125.61840 * 179.77779 * 17 16 15 27 27 H 1.09007 * 109.48839 * 182.39531 * 19 12 11 28 28 H 1.09009 * 109.50682 * 62.29317 * 19 12 11 29 29 H 1.09002 * 109.46271 * 299.17460 * 20 19 12 30 30 H 1.08994 * 109.46242 * 179.19760 * 20 19 12 31 31 H 1.00893 * 111.00252 * 62.36001 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6245 -2.5567 0.8895 11 6 2.2459 -3.6621 -0.0005 12 6 1.4762 -4.9857 -0.0208 13 1 2.1808 -5.8163 -0.0635 14 6 0.6379 -5.0999 1.2263 15 6 0.7200 -6.0648 2.1573 16 7 -0.1970 -5.7977 3.1039 17 6 -0.8347 -4.7112 2.7729 18 8 -0.3390 -4.2568 1.6142 19 6 0.5679 -5.0196 -1.2528 20 6 -0.3784 -3.8174 -1.2166 21 7 0.4060 -2.5762 -1.1990 22 1 -0.4850 0.8400 -0.0004 23 1 2.8815 -3.5973 -0.8836 24 1 2.8626 -3.6136 0.8969 25 1 1.4015 -6.9026 2.1484 26 1 -1.6314 -4.2522 3.3393 27 1 -0.0143 -5.9412 -1.2501 28 1 1.1772 -4.9762 -2.1556 29 1 -0.9970 -3.8690 -0.3206 30 1 -1.0168 -3.8311 -2.1000 31 1 0.9592 -2.4861 -2.0379 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259827200.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:16 Heat of formation + Delta-G solvation = 21.624572 kcal Electronic energy + Delta-G solvation = -15725.282368 eV Core-core repulsion = 13201.159398 eV Total energy + Delta-G solvation = -2524.122970 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.92575 -37.98942 -34.22047 -33.01018 -31.63894 -29.93541 -28.44304 -25.11307 -23.21496 -22.15015 -21.66182 -20.81990 -19.31186 -16.75765 -16.55008 -16.14960 -14.74149 -14.55666 -14.21732 -13.69518 -13.56880 -13.31247 -12.95344 -12.43597 -12.00754 -11.61551 -11.25159 -11.00983 -10.89305 -10.67127 -10.58083 -10.38966 -10.10296 -9.80522 -9.58075 -8.89026 -8.37196 -8.32688 -6.76850 -5.84296 -3.98964 1.95649 3.08832 3.25391 3.34421 3.41457 3.43905 4.49290 4.62618 5.03880 5.24848 5.32207 5.40471 5.52824 5.64809 5.86512 5.93464 6.12045 6.13537 6.28822 6.41803 6.43825 6.47637 6.68086 6.76158 6.89757 6.95779 7.62373 7.92914 8.11155 8.28612 8.65199 8.97159 9.17640 9.69428 11.19576 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.034919 B = 0.009487 C = 0.008738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.661799 B = 2950.810647 C = 3203.773875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.084 3.916 3 Si 0.880 3.120 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.540 4.540 8 H 0.052 0.948 9 C 0.218 3.782 10 H 0.052 0.948 11 C -0.145 4.145 12 C -0.009 4.009 13 H 0.086 0.914 14 C -0.003 4.003 15 C -0.069 4.069 16 N -0.496 5.496 17 C 0.150 3.850 18 O -0.171 6.171 19 C -0.153 4.153 20 C 0.052 3.948 21 N -0.644 5.644 22 H 0.255 0.745 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.174 0.826 26 H 0.241 0.759 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.318 0.682 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.020 -9.316 0.030 9.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.480 5.480 2 C -0.123 4.123 3 Si 0.708 3.292 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.578 4.578 8 H 0.070 0.930 9 C 0.111 3.889 10 H 0.070 0.930 11 C -0.184 4.184 12 C -0.028 4.028 13 H 0.104 0.896 14 C -0.058 4.058 15 C -0.208 4.208 16 N -0.225 5.225 17 C -0.076 4.076 18 O -0.055 6.055 19 C -0.193 4.193 20 C -0.079 4.079 21 N -0.271 5.271 22 H 0.065 0.935 23 H 0.079 0.921 24 H 0.075 0.925 25 H 0.192 0.808 26 H 0.257 0.743 27 H 0.073 0.927 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.072 0.928 31 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.871 -9.100 0.841 9.180 hybrid contribution 1.306 0.548 -0.691 1.576 sum 0.436 -8.552 0.150 8.565 Atomic orbital electron populations 1.70115 1.05605 1.25527 1.46736 1.24953 0.94607 0.98473 0.94273 0.86822 0.80032 0.84342 0.78001 1.20760 1.21359 1.20133 1.20968 0.92216 0.90390 1.54256 0.92981 1.19262 0.88657 0.90441 0.90571 0.93035 1.22508 0.99802 0.94778 1.01356 1.20018 0.94244 1.00718 0.87849 0.89573 1.23540 0.92299 0.90480 0.99455 1.22896 1.02509 1.02423 0.92930 1.70352 1.08520 1.15292 1.28326 1.27971 1.00913 0.92693 0.85982 1.84783 1.40268 1.45954 1.34495 1.22417 0.99332 1.01080 0.96457 1.22135 0.96224 0.88421 1.01127 1.60909 1.30383 1.30707 1.05144 0.93540 0.92140 0.92492 0.80838 0.74278 0.92748 0.91591 0.91253 0.92831 0.86514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.40 12.77 55.43 0.71 -23.69 16 2 C 0.08 2.32 5.39 -17.82 -0.10 2.22 16 3 Si 0.88 21.15 29.54 -169.99 -5.02 16.13 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.54 -14.64 8.70 -34.44 -0.30 -14.94 16 8 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 9 C 0.22 5.28 2.03 -68.87 -0.14 5.14 16 10 H 0.05 1.40 5.68 -51.92 -0.29 1.10 16 11 C -0.14 -2.88 4.79 -26.65 -0.13 -3.01 16 12 C -0.01 -0.16 3.11 -91.65 -0.29 -0.44 16 13 H 0.09 1.20 8.11 -51.93 -0.42 0.78 16 14 C 0.00 -0.06 5.44 -35.69 -0.19 -0.25 16 15 C -0.07 -1.14 11.79 -17.77 -0.21 -1.35 16 16 N -0.50 -8.53 11.29 -14.97 -0.17 -8.70 16 17 C 0.15 2.45 13.23 52.10 0.69 3.14 16 18 O -0.17 -3.27 6.15 5.38 0.03 -3.24 16 19 C -0.15 -2.45 5.57 -26.66 -0.15 -2.60 16 20 C 0.05 1.00 6.30 -3.84 -0.02 0.97 16 21 N -0.64 -14.82 5.81 -107.99 -0.63 -15.44 16 22 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 23 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 24 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 25 H 0.17 2.33 8.06 -52.49 -0.42 1.90 16 26 H 0.24 2.80 8.06 -52.49 -0.42 2.37 16 27 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 29 H 0.07 1.44 5.67 -51.93 -0.29 1.15 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.32 7.11 8.79 -39.30 -0.35 6.76 16 LS Contribution 254.36 15.07 3.83 3.83 Total: -1.00 -30.60 254.36 -5.93 -36.54 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -3.86 Total: 5.69 kcal Atomic # 6 Polarization: -10.29 SS G_CDS: -0.84 Total: -11.12 kcal Atomic # 7 Polarization: -47.75 SS G_CDS: -0.09 Total: -47.84 kcal Atomic # 8 Polarization: -3.27 SS G_CDS: 0.03 Total: -3.24 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.60 -5.93 -36.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259827200.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.164 kcal (2) G-P(sol) polarization free energy of solvation -30.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds