Wall clock time and date at job start Thu Apr 9 2020 14:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86793 * 120.00231 * 2 1 4 4 H 1.48504 * 109.47289 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47059 * 299.99393 * 3 2 1 6 6 H 1.48502 * 109.47264 * 59.99303 * 3 2 1 7 7 C 1.37883 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99403 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00149 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47117 * 180.02562 * 9 7 2 11 11 H 1.08992 * 109.46907 * 55.00321 * 10 9 7 12 12 N 1.46904 * 109.46895 * 295.00154 * 10 9 7 13 13 C 1.53004 * 109.46745 * 175.00580 * 10 9 7 14 14 H 1.08992 * 109.47629 * 60.00184 * 13 10 9 15 15 O 1.42893 * 109.46984 * 299.99248 * 13 10 9 16 16 C 1.50707 * 109.46651 * 180.02562 * 13 10 9 17 17 C 1.38223 * 119.61967 * 125.00092 * 16 13 10 18 18 C 1.38625 * 119.15978 * 180.27814 * 17 16 13 19 19 C 1.38677 * 118.42126 * 359.46985 * 18 17 16 20 20 C 1.38182 * 119.16110 * 0.48634 * 19 18 17 21 21 N 1.31856 * 119.61465 * 304.97164 * 16 13 10 22 22 H 0.96999 * 120.00231 * 0.02562 * 1 2 3 23 23 H 1.09004 * 109.46855 * 59.99963 * 9 7 2 24 24 H 1.09003 * 109.47565 * 300.00481 * 9 7 2 25 25 H 1.00900 * 111.00198 * 299.99903 * 12 10 9 26 26 H 1.00905 * 110.99963 * 63.95711 * 12 10 9 27 27 H 0.96696 * 114.00690 * 300.00921 * 15 13 10 28 28 H 1.08002 * 120.41617 * 359.97438 * 17 16 13 29 29 H 1.08003 * 120.79223 * 179.72202 * 18 17 16 30 30 H 1.08006 * 120.41702 * 180.22168 * 19 18 17 31 31 H 1.07998 * 119.61686 * 179.76233 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0018 11 1 2.9286 -3.5549 0.8441 12 7 3.0093 -3.6545 -1.2528 13 6 1.4842 -4.9835 0.1274 14 1 0.8008 -5.0907 -0.7149 15 8 0.7410 -4.9910 1.3479 16 6 2.4635 -6.1290 0.1293 17 6 2.4495 -7.0380 1.1705 18 6 3.3585 -8.0847 1.1655 19 6 4.2442 -8.1847 0.1031 20 6 4.1984 -7.2386 -0.9030 21 7 3.3235 -6.2526 -0.8626 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6239 -2.5568 0.8902 25 1 2.3977 -3.7526 -2.0493 26 1 3.5711 -2.8198 -1.3290 27 1 1.2863 -4.8992 2.1411 28 1 1.7427 -6.9313 1.9800 29 1 3.3738 -8.8075 1.9679 30 1 4.9635 -8.9895 0.0648 31 1 4.8873 -7.3073 -1.7319 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259846002.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:32 Heat of formation + Delta-G solvation = -43.865150 kcal Electronic energy + Delta-G solvation = -14908.902265 eV Core-core repulsion = 12381.939447 eV Total energy + Delta-G solvation = -2526.962818 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.19013 -38.72389 -36.16638 -34.41260 -33.15437 -32.11087 -29.78823 -28.10192 -25.50026 -24.19513 -22.89919 -21.66902 -18.74243 -18.49803 -17.34152 -16.85405 -16.60496 -16.29223 -16.13219 -15.41699 -14.88716 -14.39526 -14.27928 -13.97454 -13.95652 -13.70680 -13.01455 -12.71770 -12.57368 -12.41778 -12.15976 -11.71926 -11.47522 -11.05245 -10.61254 -10.60611 -10.03654 -9.78650 -9.08513 -8.21026 -6.32656 0.28471 0.56168 1.38038 1.38920 1.51538 2.38530 3.00391 3.12061 3.20996 3.51527 3.93834 4.07027 4.12262 4.24827 4.36124 4.41896 4.53236 4.74720 4.94327 4.95074 5.01942 5.34700 5.38431 5.43130 5.59676 5.78135 5.93499 6.17982 6.48597 6.72279 6.82709 6.85107 7.33911 7.36851 8.90495 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.050263 B = 0.006496 C = 0.006063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.932786 B = 4309.583486 C = 4616.767590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.533 4.533 8 H 0.061 0.939 9 C 0.006 3.994 10 C 0.093 3.907 11 H 0.056 0.944 12 N -0.801 5.801 13 C 0.169 3.831 14 H 0.091 0.909 15 O -0.558 6.558 16 C 0.085 3.915 17 C -0.179 4.179 18 C -0.082 4.082 19 C -0.174 4.174 20 C 0.076 3.924 21 N -0.458 5.458 22 H 0.262 0.738 23 H -0.015 1.015 24 H -0.003 1.003 25 H 0.330 0.670 26 H 0.335 0.665 27 H 0.386 0.614 28 H 0.146 0.854 29 H 0.163 0.837 30 H 0.164 0.836 31 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.359 -15.425 1.801 17.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.571 4.571 8 H 0.079 0.921 9 C -0.033 4.033 10 C -0.020 4.020 11 H 0.074 0.926 12 N -0.329 5.329 13 C 0.108 3.892 14 H 0.109 0.891 15 O -0.363 6.363 16 C -0.053 4.053 17 C -0.199 4.199 18 C -0.108 4.108 19 C -0.194 4.194 20 C -0.082 4.082 21 N -0.168 5.168 22 H 0.071 0.929 23 H 0.004 0.996 24 H 0.016 0.984 25 H 0.141 0.859 26 H 0.147 0.853 27 H 0.235 0.765 28 H 0.164 0.836 29 H 0.180 0.820 30 H 0.181 0.819 31 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 8.044 -15.439 1.032 17.439 hybrid contribution -0.167 1.525 0.750 1.708 sum 7.877 -13.913 1.783 16.087 Atomic orbital electron populations 1.70127 1.07869 1.27569 1.51671 1.25948 0.95638 1.03277 0.94826 0.85411 0.79111 0.78991 0.77568 1.18523 1.20625 1.20677 1.21573 0.93252 0.91966 1.50350 0.92096 1.19676 0.94739 0.93704 0.95183 1.21721 0.93868 0.92551 0.93882 0.92577 1.59035 1.27053 1.44189 1.02616 1.20420 0.90804 0.90718 0.87253 0.89085 1.86569 1.37866 1.95809 1.16028 1.21811 0.95337 0.96077 0.92058 1.22128 1.01250 0.96250 1.00295 1.21907 0.93185 0.96974 0.98701 1.22515 1.00738 1.01161 0.94980 1.23304 0.96093 0.89782 0.98979 1.67522 1.03196 1.20589 1.25447 0.92914 0.99634 0.98421 0.85858 0.85284 0.76483 0.83585 0.81985 0.81880 0.81260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.53 -29.76 8.55 25.60 0.22 -29.54 16 8 H 0.06 3.26 7.14 -2.91 -0.02 3.24 16 9 C 0.01 0.30 4.55 29.85 0.14 0.44 16 10 C 0.09 3.88 2.51 44.92 0.11 3.99 16 11 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 12 N -0.80 -31.22 7.49 -168.67 -1.26 -32.49 16 13 C 0.17 6.21 3.23 29.85 0.10 6.30 16 14 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 15 O -0.56 -19.60 11.46 -148.98 -1.71 -21.31 16 16 C 0.08 2.72 6.17 42.55 0.26 2.98 16 17 C -0.18 -4.57 9.24 22.36 0.21 -4.36 16 18 C -0.08 -1.61 10.18 22.47 0.23 -1.38 16 19 C -0.17 -3.32 10.11 22.36 0.23 -3.09 16 20 C 0.08 1.87 11.18 84.67 0.95 2.82 16 21 N -0.46 -14.66 8.59 -183.88 -1.58 -16.24 16 22 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 23 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 24 H 0.00 -0.15 7.54 -2.39 -0.02 -0.17 16 25 H 0.33 12.84 9.00 -89.69 -0.81 12.03 16 26 H 0.33 13.46 7.90 -89.69 -0.71 12.75 16 27 H 0.39 10.81 8.30 -74.06 -0.61 10.19 16 28 H 0.15 3.27 6.73 -2.91 -0.02 3.25 16 29 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 30 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 31 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -68.40 266.36 -0.31 -68.71 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: -0.97 Total: 33.16 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: 2.90 Total: -21.33 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -2.56 Total: -105.65 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -1.71 Total: -21.31 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -68.40 -0.31 -68.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259846002.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.841 kcal (2) G-P(sol) polarization free energy of solvation -68.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds