Wall clock time and date at job start Thu Apr 9 2020 14:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99990 * 2 1 4 4 H 1.48494 * 109.46999 * 180.27567 * 3 2 1 5 5 H 1.48498 * 109.47190 * 300.27265 * 3 2 1 6 6 H 1.48501 * 109.47140 * 60.27500 * 3 2 1 7 7 C 1.37873 * 119.99781 * 180.27684 * 2 1 3 8 8 H 1.08007 * 119.99936 * 173.91589 * 7 2 1 9 9 C 1.50700 * 120.00296 * 353.91178 * 7 2 1 10 10 N 1.46494 * 109.54411 * 56.84276 * 9 7 2 11 11 C 1.34953 * 126.03578 * 74.44482 * 10 9 7 12 12 C 1.35320 * 107.74516 * 179.84232 * 11 10 9 13 13 C 1.39864 * 107.91959 * 0.42158 * 12 11 10 14 14 N 1.30841 * 108.20308 * 359.74028 * 13 12 11 15 15 C 1.53174 * 109.54121 * 296.66672 * 9 7 2 16 16 C 1.53102 * 109.15854 * 183.24099 * 15 9 7 17 17 O 1.42901 * 109.48965 * 57.47094 * 16 15 9 18 18 C 1.42900 * 114.09947 * 298.89765 * 17 16 15 19 19 C 1.53087 * 109.41621 * 61.15191 * 18 17 16 20 20 H 0.97003 * 119.99928 * 359.72533 * 1 2 3 21 21 H 1.07999 * 126.12799 * 359.97438 * 11 10 9 22 22 H 1.07998 * 126.03966 * 180.16009 * 12 11 10 23 23 H 1.08000 * 125.89807 * 179.76242 * 13 12 11 24 24 H 1.09000 * 109.52568 * 303.06093 * 15 9 7 25 25 H 1.09001 * 109.52520 * 63.24446 * 15 9 7 26 26 H 1.09007 * 109.40583 * 297.49780 * 16 15 9 27 27 H 1.08996 * 109.49633 * 177.51008 * 16 15 9 28 28 H 1.09004 * 109.47964 * 301.16528 * 18 17 16 29 29 H 1.09005 * 109.49093 * 181.14034 * 18 17 16 30 30 H 1.09004 * 109.52196 * 182.48433 * 19 18 17 31 31 H 1.08999 * 109.57405 * 62.33203 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3464 -0.0067 5 1 1.8854 2.3994 -1.2091 6 1 1.8954 2.3936 1.2159 7 6 2.0044 -1.1940 -0.0058 8 1 3.0799 -1.1962 -0.1049 9 6 1.2573 -2.4961 0.1264 10 7 0.2561 -2.5969 -0.9383 11 6 0.5038 -2.8591 -2.2388 12 6 -0.6822 -2.8702 -2.8904 13 6 -1.6880 -2.5961 -1.9580 14 7 -1.1267 -2.4320 -0.7875 15 6 0.5623 -2.5519 1.4902 16 6 -0.1262 -3.9102 1.6481 17 8 0.8394 -4.9538 1.5047 18 6 1.4861 -4.9793 0.2306 19 6 2.2413 -3.6649 0.0168 20 1 -0.4850 0.8401 0.0040 21 1 1.4743 -3.0316 -2.6800 22 1 -0.8261 -3.0537 -3.9449 23 1 -2.7455 -2.5314 -2.1679 24 1 1.3015 -2.4256 2.2812 25 1 -0.1799 -1.7562 1.5537 26 1 -0.8943 -4.0181 0.8821 27 1 -0.5853 -3.9729 2.6346 28 1 0.7392 -5.1012 -0.5538 29 1 2.1887 -5.8120 0.1960 30 1 2.6988 -3.6644 -0.9726 31 1 3.0161 -3.5612 0.7764 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259944342.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:47 Heat of formation + Delta-G solvation = 17.543014 kcal Electronic energy + Delta-G solvation = -16222.324987 eV Core-core repulsion = 13698.025027 eV Total energy + Delta-G solvation = -2524.299960 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.78886 -39.67912 -36.23901 -33.71268 -32.06268 -30.79198 -29.98005 -28.02765 -24.60593 -24.41124 -22.43613 -21.14562 -20.16184 -18.86145 -17.57375 -16.93898 -16.63586 -16.15209 -15.72324 -15.20266 -14.81849 -14.55813 -14.05354 -13.94309 -13.34008 -13.12410 -12.98331 -12.88965 -12.68131 -12.37030 -12.10193 -11.89464 -11.40647 -11.21516 -10.78211 -10.70504 -10.34874 -9.65288 -8.94266 -8.09343 -6.40956 1.33884 1.39302 1.48068 1.68847 2.33588 2.34940 2.42323 3.01417 3.19607 3.98146 4.19702 4.20333 4.35161 4.40096 4.46058 4.48991 4.69857 4.74283 4.90748 5.04840 5.10021 5.17637 5.32804 5.38363 5.49874 5.57336 5.78289 6.05199 6.31424 6.37053 6.56561 6.95868 7.32141 7.51200 8.80111 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.025854 B = 0.014448 C = 0.011581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.758738 B = 1937.480538 C = 2417.158711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.857 5.857 2 C 0.036 3.964 3 Si 0.949 3.051 4 H -0.263 1.263 5 H -0.289 1.289 6 H -0.282 1.282 7 C -0.558 4.558 8 H 0.068 0.932 9 C 0.289 3.711 10 N -0.300 5.300 11 C 0.028 3.972 12 C -0.306 4.306 13 C -0.018 4.018 14 N -0.286 5.286 15 C -0.127 4.127 16 C 0.064 3.936 17 O -0.399 6.399 18 C 0.064 3.936 19 C -0.147 4.147 20 H 0.257 0.743 21 H 0.169 0.831 22 H 0.150 0.850 23 H 0.181 0.819 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.044 0.956 27 H 0.094 0.906 28 H 0.034 0.966 29 H 0.117 0.883 30 H 0.079 0.921 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.827 -6.137 -1.860 6.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.170 4.170 3 Si 0.775 3.225 4 H -0.187 1.187 5 H -0.216 1.216 6 H -0.207 1.207 7 C -0.597 4.597 8 H 0.086 0.914 9 C 0.209 3.791 10 N -0.081 5.081 11 C -0.122 4.122 12 C -0.336 4.336 13 C -0.202 4.202 14 N -0.109 5.109 15 C -0.166 4.166 16 C -0.012 4.012 17 O -0.318 6.318 18 C -0.012 4.012 19 C -0.186 4.186 20 H 0.066 0.934 21 H 0.186 0.814 22 H 0.168 0.832 23 H 0.198 0.802 24 H 0.075 0.925 25 H 0.089 0.911 26 H 0.062 0.938 27 H 0.113 0.887 28 H 0.052 0.948 29 H 0.135 0.865 30 H 0.097 0.903 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.601 -5.904 -0.334 6.126 hybrid contribution 0.294 1.481 -1.249 1.959 sum 1.895 -4.423 -1.582 5.066 Atomic orbital electron populations 1.70267 1.06584 1.26784 1.45368 1.25752 0.95541 1.02154 0.93595 0.85648 0.79538 0.80093 0.77175 1.18689 1.21586 1.20746 1.21545 0.93709 0.90532 1.53934 0.91401 1.18530 0.83430 0.93831 0.83323 1.49677 1.04332 1.47287 1.06834 1.22562 1.00254 1.02871 0.86504 1.21449 0.91643 1.19588 1.00948 1.23966 1.00578 1.03908 0.91759 1.77166 0.89846 1.20234 1.23619 1.22029 1.00298 0.97323 0.96923 1.22644 0.90402 0.86723 1.01480 1.87775 1.56376 1.52360 1.35316 1.22643 0.95763 0.97979 0.84864 1.22485 0.98558 0.94335 1.03228 0.93352 0.81402 0.83238 0.80227 0.92540 0.91100 0.93820 0.88748 0.94759 0.86464 0.90251 0.89816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.17 10.10 21.45 0.22 -46.95 16 2 C 0.04 1.88 5.21 84.65 0.44 2.32 16 3 Si 0.95 41.89 29.54 68.60 2.03 43.92 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 7 C -0.56 -28.19 8.11 25.60 0.21 -27.98 16 8 H 0.07 3.35 7.75 -2.91 -0.02 3.33 16 9 C 0.29 13.23 0.44 2.98 0.00 13.23 16 10 N -0.30 -13.89 1.84 -310.71 -0.57 -14.46 16 11 C 0.03 1.16 10.26 83.54 0.86 2.01 16 12 C -0.31 -12.02 10.80 21.99 0.24 -11.78 16 13 C -0.02 -0.77 12.03 85.23 1.02 0.26 16 14 N -0.29 -13.78 8.91 -57.03 -0.51 -14.29 16 15 C -0.13 -5.86 4.38 30.69 0.13 -5.72 16 16 C 0.06 2.61 6.64 72.02 0.48 3.09 16 17 O -0.40 -15.44 10.77 -148.98 -1.60 -17.04 16 18 C 0.06 2.21 6.68 72.01 0.48 2.69 16 19 C -0.15 -5.53 4.62 30.68 0.14 -5.39 16 20 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 21 H 0.17 6.07 7.53 -2.91 -0.02 6.05 16 22 H 0.15 4.85 8.06 -2.91 -0.02 4.82 16 23 H 0.18 6.35 8.06 -2.91 -0.02 6.32 16 24 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 25 H 0.07 3.74 6.49 -2.39 -0.02 3.72 16 26 H 0.04 1.92 6.41 -2.38 -0.02 1.90 16 27 H 0.09 3.44 8.14 -2.39 -0.02 3.42 16 28 H 0.03 1.26 7.46 -2.38 -0.02 1.24 16 29 H 0.12 3.19 8.14 -2.38 -0.02 3.17 16 30 H 0.08 2.74 7.27 -2.39 -0.02 2.72 16 31 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -59.67 251.56 4.68 -54.99 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 1.12 Total: 21.11 kcal Atomic # 6 Polarization: -31.28 SS G_CDS: 4.01 Total: -27.28 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -0.86 Total: -75.70 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -1.60 Total: -17.04 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -59.67 4.68 -54.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259944342.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.533 kcal (2) G-P(sol) polarization free energy of solvation -59.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds