Wall clock time and date at job start Thu Apr 9 2020 14:16:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99722 * 2 1 4 4 H 1.48506 * 109.47297 * 239.99731 * 3 2 1 5 5 H 1.48503 * 109.47261 * 119.99912 * 3 2 1 6 6 H 1.48500 * 109.47454 * 359.97438 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50695 * 119.99572 * 0.02562 * 7 2 1 10 10 H 1.09006 * 110.29157 * 299.32605 * 9 7 2 11 11 C 1.54263 * 110.32795 * 61.45483 * 9 7 2 12 12 C 1.54376 * 105.05965 * 118.89465 * 11 9 7 13 13 N 1.48554 * 104.60062 * 23.85470 * 12 11 9 14 14 C 1.46890 * 111.00614 * 200.96350 * 13 12 11 15 15 C 1.50700 * 109.47462 * 69.86742 * 14 13 12 16 16 C 1.34330 * 126.44058 * 89.71432 * 15 14 13 17 17 N 1.34480 * 107.66716 * 179.87928 * 16 15 14 18 18 C 1.30252 * 108.69905 * 0.39180 * 17 16 15 19 19 O 1.33958 * 108.76421 * 359.76118 * 18 17 16 20 20 C 1.48567 * 104.21971 * 320.51681 * 13 12 11 21 21 H 0.97006 * 119.99995 * 179.97438 * 1 2 3 22 22 H 1.08998 * 110.32354 * 237.78992 * 11 9 7 23 23 H 1.09000 * 110.31795 * 359.97438 * 11 9 7 24 24 H 1.08996 * 110.41038 * 142.63881 * 12 11 9 25 25 H 1.09005 * 110.41041 * 265.07202 * 12 11 9 26 26 H 1.08996 * 109.47586 * 189.87566 * 14 13 12 27 27 H 1.09010 * 109.46847 * 309.87366 * 14 13 12 28 28 H 1.08003 * 126.16724 * 0.02562 * 16 15 14 29 29 H 1.08002 * 125.61548 * 179.77216 * 18 17 16 30 30 H 1.08998 * 110.41212 * 280.70473 * 20 13 12 31 31 H 1.08995 * 110.41038 * 158.25664 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 3.1028 1.6965 1.2125 6 1 1.2840 2.7465 -0.0006 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6280 -2.5759 0.8917 11 6 0.3850 -2.6178 -1.2705 12 6 0.9187 -3.8668 -2.0043 13 7 1.5555 -4.6833 -0.9391 14 6 2.5222 -5.6310 -1.5092 15 6 3.7177 -4.8763 -2.0310 16 6 4.8273 -4.5638 -1.3413 17 7 5.6476 -3.8937 -2.1698 18 6 5.0690 -3.7837 -3.3315 19 8 3.8723 -4.3829 -3.2754 20 6 2.2352 -3.6864 -0.0723 21 1 -0.4850 -0.8401 -0.0004 22 1 -0.6628 -2.7546 -1.0032 23 1 0.5046 -1.7319 -1.8941 24 1 0.0980 -4.4165 -2.4652 25 1 1.6549 -3.5808 -2.7554 26 1 2.8428 -6.3312 -0.7379 27 1 2.0542 -6.1800 -2.3264 28 1 5.0259 -4.8089 -0.3083 29 1 5.4856 -3.2908 -4.1975 30 1 3.1775 -3.3721 -0.5210 31 1 2.4057 -4.1003 0.9215 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259962025.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Apr 9 2020 14:16:52 Heat of formation + Delta-G solvation = 27.328414 kcal Electronic energy + Delta-G solvation = -15543.312355 eV Core-core repulsion = 13019.436722 eV Total energy + Delta-G solvation = -2523.875633 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 222.111 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.17527 -38.35787 -34.51921 -33.96982 -31.51512 -29.02308 -28.17568 -25.51641 -23.85269 -22.49168 -21.66249 -20.11661 -19.57192 -17.37597 -17.12478 -16.33680 -15.38767 -14.63226 -14.45026 -14.01568 -13.84921 -13.62594 -13.15644 -12.45476 -11.95687 -11.72519 -11.14082 -11.05365 -10.98081 -10.79051 -10.49769 -10.32676 -10.12497 -9.92685 -9.50992 -8.66919 -8.42451 -8.33049 -8.18753 -6.34493 -4.06636 1.64749 2.90852 2.94759 3.43711 3.44661 3.63614 4.37886 4.48659 4.58593 4.96296 5.14259 5.32416 5.38646 5.58982 5.64457 5.83609 5.91708 6.10167 6.13572 6.21945 6.36086 6.49589 6.65389 6.82604 6.87330 7.21506 7.35178 7.39576 7.63083 7.86869 8.24883 8.42350 8.88369 9.65246 11.04355 Molecular weight = 222.11amu Principal moments of inertia in cm(-1) A = 0.028697 B = 0.010086 C = 0.008365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.467621 B = 2775.574850 C = 3346.277870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 1.065 2.935 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.594 4.594 8 H 0.047 0.953 9 C 0.034 3.966 10 H 0.024 0.976 11 C -0.113 4.113 12 C 0.031 3.969 13 N -0.502 5.502 14 C 0.124 3.876 15 C -0.066 4.066 16 C -0.032 4.032 17 N -0.487 5.487 18 C 0.161 3.839 19 O -0.202 6.202 20 C 0.032 3.968 21 H 0.273 0.727 22 H 0.045 0.955 23 H 0.068 0.932 24 H 0.067 0.933 25 H 0.040 0.960 26 H 0.106 0.894 27 H 0.086 0.914 28 H 0.180 0.820 29 H 0.245 0.755 30 H 0.054 0.946 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.876 -9.597 -5.562 12.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.184 4.184 3 Si 0.893 3.107 4 H -0.216 1.216 5 H -0.214 1.214 6 H -0.207 1.207 7 C -0.632 4.632 8 H 0.065 0.935 9 C 0.015 3.985 10 H 0.043 0.957 11 C -0.152 4.152 12 C -0.096 4.096 13 N -0.224 5.224 14 C -0.006 4.006 15 C -0.121 4.121 16 C -0.172 4.172 17 N -0.215 5.215 18 C -0.066 4.066 19 O -0.087 6.087 20 C -0.094 4.094 21 H 0.084 0.916 22 H 0.064 0.936 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.059 0.941 26 H 0.124 0.876 27 H 0.105 0.895 28 H 0.197 0.803 29 H 0.261 0.739 30 H 0.072 0.928 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.817 -8.041 -5.156 11.184 hybrid contribution 0.339 -1.356 -0.674 1.551 sum 6.156 -9.396 -5.830 12.656 Atomic orbital electron populations 1.70779 1.06773 1.31056 1.46082 1.25745 0.96549 1.02413 0.93703 0.83599 0.74940 0.75562 0.76563 1.21596 1.21412 1.20739 1.21981 0.93857 0.91361 1.56038 0.93516 1.19518 0.92833 0.92809 0.93336 0.95742 1.22519 0.98425 0.95095 0.99154 1.23193 0.97824 0.95093 0.93517 1.65792 1.24351 1.16350 1.15890 1.21145 0.85822 0.94871 0.98725 1.24666 1.00885 1.03734 0.82784 1.23032 0.91269 1.01811 1.01086 1.70393 1.32443 1.17195 1.01511 1.27981 0.81015 0.98582 0.99014 1.84470 1.36410 1.55525 1.32332 1.23482 0.98172 0.92157 0.95629 0.91591 0.93583 0.91313 0.91506 0.94134 0.87620 0.89546 0.80325 0.73923 0.92768 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.26 13.27 55.43 0.74 -26.53 16 2 C 0.02 0.58 5.09 -17.82 -0.09 0.49 16 3 Si 1.06 25.48 29.90 -169.99 -5.08 20.40 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.59 -16.74 8.37 -34.44 -0.29 -17.03 16 8 H 0.05 1.34 7.58 -52.49 -0.40 0.94 16 9 C 0.03 0.86 2.65 -90.39 -0.24 0.62 16 10 H 0.02 0.66 8.04 -51.93 -0.42 0.25 16 11 C -0.11 -2.65 5.03 -25.35 -0.13 -2.77 16 12 C 0.03 0.61 6.33 -2.19 -0.01 0.60 16 13 N -0.50 -9.21 5.65 -231.42 -1.31 -10.52 16 14 C 0.12 1.81 6.13 -4.98 -0.03 1.78 16 15 C -0.07 -1.05 4.83 -35.69 -0.17 -1.22 16 16 C -0.03 -0.53 9.84 -17.77 -0.17 -0.71 16 17 N -0.49 -8.23 11.29 -14.97 -0.17 -8.40 16 18 C 0.16 2.32 13.23 52.09 0.69 3.01 16 19 O -0.20 -3.24 9.90 5.39 0.05 -3.19 16 20 C 0.03 0.68 5.64 -2.17 -0.01 0.67 16 21 H 0.27 8.07 6.00 -40.82 -0.25 7.82 16 22 H 0.05 1.05 7.92 -51.93 -0.41 0.64 16 23 H 0.07 1.78 7.24 -51.93 -0.38 1.41 16 24 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.04 0.81 6.46 -51.93 -0.34 0.48 16 26 H 0.11 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.09 1.12 8.09 -51.92 -0.42 0.70 16 28 H 0.18 2.59 8.06 -52.48 -0.42 2.16 16 29 H 0.24 2.24 8.06 -52.49 -0.42 1.82 16 30 H 0.05 1.20 4.39 -51.93 -0.23 0.97 16 31 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 254.74 15.07 3.84 3.84 Total: -1.00 -32.03 254.74 -6.13 -38.17 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -3.74 Total: 0.79 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -0.46 Total: -14.56 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.74 Total: -45.44 kcal Atomic # 8 Polarization: -3.24 SS G_CDS: 0.05 Total: -3.19 kcal Atomic # 14 Polarization: 25.48 SS G_CDS: -5.08 Total: 20.40 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.03 -6.13 -38.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259962025.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.494 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.165 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds